The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031631	Streptococcus pyogenes strain MGAS28191 chromosome, complete genome	1892473	36552	48865	1892473		Synechococcus_phage(28.57%)	8	NA	NA
QBB37447.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB37448.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB37449.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB37450.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB37451.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB37452.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB39134.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB37453.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031631	Streptococcus pyogenes strain MGAS28191 chromosome, complete genome	1892473	781940	881530	1892473	portal,integrase,tail,terminase,capsid,transposase,tRNA,head	Streptococcus_phage(40.3%)	114	801911:801970	848083:848178
QBB38093.1|781940_782165_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB38094.1|782484_783744_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB38095.1|783909_785613_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB38096.1|785638_787774_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB38097.1|787848_789156_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB38098.1|789152_790013_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB38099.1|790034_790850_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB38100.1|790965_791766_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB38101.1|791920_792757_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB38102.1|792756_794118_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB38103.1|794391_795639_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB38104.1|795881_796901_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB38105.1|797016_798510_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB38106.1|798544_800809_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB38107.1|801065_801686_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
801911:801970	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
QBB38108.1|802048_803137_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB38109.1|803386_804196_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
QBB38110.1|804208_804952_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB38111.1|805444_805660_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB38112.1|805718_805877_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB38113.1|805906_806506_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB38114.1|806559_806769_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB38115.1|806757_807144_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB38116.1|807217_807445_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB38117.1|807552_808062_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38118.1|808116_808362_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB38119.1|808320_808530_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38120.1|808679_808919_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38121.1|809085_809271_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB38122.1|809349_809646_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB38123.1|809642_809780_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB38124.1|809860_810190_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB38125.1|810189_810384_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB38126.1|810380_810665_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38127.1|810661_811345_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB38128.1|811380_812784_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB38129.1|812788_813271_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB38130.1|813288_814842_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB38131.1|815110_815980_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB38132.1|815933_816284_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB38133.1|816267_816624_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB38134.1|816620_816866_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB38135.1|816865_817102_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB38136.1|817265_817550_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB38137.1|817551_818184_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB39168.1|818188_818668_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB38138.1|819116_819551_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB38139.1|820128_821043_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38140.1|821061_821523_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38141.1|821660_822038_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB38142.1|822089_822275_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB39169.1|822337_822805_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB38143.1|822782_824090_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB38144.1|824101_825604_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB38145.1|825584_827147_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB38146.1|827150_827336_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38147.1|827405_827720_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB38148.1|827722_827989_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB38149.1|828132_828666_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB38150.1|828675_829056_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB38151.1|829058_830141_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB38152.1|830150_830393_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38153.1|830406_830760_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB38154.1|830756_831065_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB38155.1|831045_831411_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB38156.1|831407_831797_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB39170.1|831851_832475_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB38157.1|832528_832882_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB39171.1|832956_833253_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB38158.1|833267_836903_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB38159.1|836934_837714_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB38160.1|837710_839765_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB38161.1|839761_840976_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB38162.1|840962_841292_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38163.1|841302_843198_+	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB38164.1|843211_843373_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38165.1|843375_843993_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB38166.1|844003_844300_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB38167.1|844296_844482_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB38168.1|844593_845928_+	lysin	NA	Q5MY96	Streptococcus_phage	92.8	5.0e-247
QBB38169.1|846003_846711_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB38170.1|846821_847580_-	DNAse	NA	NA	NA	NA	NA
QBB38171.1|847819_848008_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB38172.1|848598_849213_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
848083:848178	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB38173.1|849339_850125_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB38174.1|850134_850833_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB38175.1|850832_851204_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB38176.1|851388_854499_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB38177.1|854578_855592_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB38178.1|855654_857157_+	pyruvate kinase	NA	NA	NA	NA	NA
QBB38179.1|857374_857932_+	signal peptidase I	NA	NA	NA	NA	NA
QBB38180.1|858107_859922_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB38181.1|860117_860453_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB38182.1|860559_861201_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB38183.1|861210_861840_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB38184.1|861855_862692_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB38185.1|863061_863835_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38186.1|864204_865440_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB38187.1|865559_866882_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB38188.1|867410_869729_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB38189.1|870091_870340_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB38190.1|870376_870988_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB38191.1|870998_871187_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB38192.1|871199_871739_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB38193.1|871779_871980_+	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB38194.1|871987_872479_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB38195.1|872641_873283_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB38196.1|873425_873968_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB38197.1|874085_874787_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB38198.1|874801_877438_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB38199.1|877529_878126_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB38200.1|878136_879093_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB38201.1|879189_880530_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB38202.1|880645_881530_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 3
CP031631	Streptococcus pyogenes strain MGAS28191 chromosome, complete genome	1892473	1055490	1139855	1892473	portal,tail,integrase,capsid,terminase,transposase,head	Streptococcus_phage(68.63%)	86	1096850:1096898	1137083:1137131
QBB38366.1|1055490_1056624_-|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
QBB38367.1|1057174_1057837_-	type II-A CRISPR-associated protein Csn2	NA	NA	NA	NA	NA
QBB38368.1|1057826_1058168_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBB38369.1|1058164_1059034_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBB38370.1|1059033_1063140_-	type II CRISPR RNA-guided endonuclease Cas9	NA	NA	NA	NA	NA
QBB38371.1|1063584_1064217_-	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
QBB38372.1|1064216_1064981_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
QBB38373.1|1064980_1065733_-	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA	NA
QBB38374.1|1065742_1066873_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
QBB38375.1|1066935_1067577_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38376.1|1067700_1069056_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
QBB38377.1|1069109_1070066_-	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
QBB38378.1|1070062_1070914_-	TIGR00159 family protein	NA	NA	NA	NA	NA
QBB38379.1|1071026_1072364_+	Mur ligase family protein	NA	NA	NA	NA	NA
QBB38380.1|1072363_1073155_+	glutamine amidotransferase	NA	NA	NA	NA	NA
QBB38381.1|1073267_1074257_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	23.9	4.1e-12
QBB38382.1|1074489_1076907_+	hyaluronate lyase	NA	NA	NA	NA	NA
QBB38383.1|1077336_1077564_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38384.1|1077579_1079343_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.5	1.2e-33
QBB38385.1|1079375_1079663_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38386.1|1079673_1081083_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
QBB39176.1|1081267_1082266_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
QBB38387.1|1082324_1083293_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
QBB38388.1|1083578_1085486_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	2.0e-55
QBB38389.1|1085531_1085858_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38390.1|1085887_1086673_-	esterase family protein	NA	NA	NA	NA	NA
QBB38391.1|1086805_1088467_-	ribonuclease J 2	NA	NA	NA	NA	NA
QBB38392.1|1088670_1089429_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
QBB38393.1|1089425_1090295_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB38394.1|1090470_1090635_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38395.1|1090639_1091638_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB38396.1|1091991_1093644_+	fibronectin/fibrinogen-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
QBB38397.1|1093702_1094950_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBB38398.1|1094939_1096121_-	AI-2E family transporter	NA	NA	NA	NA	NA
QBB38399.1|1096178_1096655_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
1096850:1096898	attL	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
QBB38400.1|1097258_1097969_-	exotoxin	NA	NA	NA	NA	NA
QBB39177.1|1097994_1098672_-	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	32.4	2.4e-27
QBB38401.1|1098945_1100280_-	lysin	NA	Q5MY96	Streptococcus_phage	92.8	5.0e-247
QBB38402.1|1100391_1100577_-	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB38403.1|1100573_1100870_-	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB38404.1|1100879_1101512_-	hypothetical protein	NA	Q938J7	Temperate_phage	50.0	8.9e-45
QBB38405.1|1101514_1101943_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
QBB38406.1|1101954_1103844_-	hyaluronidase	NA	Q938J9	Temperate_phage	76.4	1.1e-186
QBB38407.1|1103854_1104184_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38408.1|1104170_1105385_-	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB38409.1|1105381_1107364_-	peptidase	NA	A7J2A7	Streptococcus_phage	92.4	0.0e+00
QBB38410.1|1107373_1108216_-|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	97.9	8.8e-157
QBB38411.1|1108227_1112610_-|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	75.2	2.5e-226
QBB38412.1|1112624_1112858_-	hypothetical protein	NA	A7J2A4	Streptococcus_phage	98.7	1.3e-33
QBB38413.1|1112932_1113388_-	hypothetical protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
QBB38414.1|1113441_1114041_-|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
QBB38415.1|1114052_1114412_-	hypothetical protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
QBB38416.1|1114415_1114760_-	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
QBB38417.1|1114756_1115035_-	hypothetical protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
QBB38418.1|1115045_1115402_-	hypothetical protein	NA	A7J298	Streptococcus_phage	99.2	7.9e-59
QBB38419.1|1115413_1116301_-|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	100.0	2.1e-161
QBB38420.1|1116313_1116883_-	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
QBB38421.1|1117044_1117311_-	hypothetical protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
QBB38422.1|1117315_1117504_-	hypothetical protein	NA	A7J294	Streptococcus_phage	100.0	7.4e-24
QBB38423.1|1117531_1118980_-|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	99.8	1.2e-278
QBB38424.1|1118939_1120472_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.6	2.2e-291
QBB38425.1|1120487_1121765_-|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	99.8	6.9e-246
QBB39178.1|1121754_1122207_-|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBB38426.1|1122296_1122713_-	transcriptional regulator	NA	A7J289	Streptococcus_phage	98.6	9.5e-72
QBB38427.1|1122845_1123118_-	hypothetical protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
QBB38428.1|1123281_1124604_-	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	97.3	5.6e-251
QBB38429.1|1124600_1124876_-	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
QBB38430.1|1125261_1127646_-	DNA primase	NA	A7J282	Streptococcus_phage	94.2	1.6e-275
QBB38431.1|1127650_1129573_-	DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
QBB38432.1|1129615_1130179_-	DUF2815 family protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
QBB38433.1|1130187_1131345_-	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
QBB38434.1|1131344_1131644_-	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
QBB38435.1|1131731_1131935_-	hypothetical protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
QBB38436.1|1132078_1132465_-	hypothetical protein	NA	A7J274	Streptococcus_phage	89.0	4.3e-58
QBB38437.1|1132461_1132665_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38438.1|1132657_1132828_-	hypothetical protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
QBB38439.1|1132829_1133141_-	excisionase	NA	A1EAC3	Streptococcus_phage	86.3	5.0e-49
QBB38440.1|1133219_1133411_-	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	69.8	4.7e-18
QBB38441.1|1133461_1134250_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38442.1|1134741_1135092_+	XRE family transcriptional regulator	NA	M1PKY8	Streptococcus_phage	62.6	1.6e-35
QBB38443.1|1135094_1135481_+	ImmA/IrrE family metallo-endopeptidase	NA	M1PFJ2	Streptococcus_phage	55.5	3.3e-34
QBB38444.1|1135492_1135759_+	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
QBB38445.1|1135886_1137026_+|integrase	site-specific integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
QBB38446.1|1137108_1138149_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
1137083:1137131	attR	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
QBB38447.1|1138392_1138986_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
QBB38448.1|1138985_1139855_-	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
>prophage 4
CP031631	Streptococcus pyogenes strain MGAS28191 chromosome, complete genome	1892473	1241790	1252394	1892473		Streptococcus_phage(57.14%)	9	NA	NA
QBB38545.1|1241790_1242933_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB38546.1|1243167_1243608_+	hypothetical protein	NA	NA	NA	NA	NA
QBB38547.1|1243637_1244906_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB38548.1|1244993_1246346_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB38549.1|1246567_1246909_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB38550.1|1246969_1248136_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB38551.1|1248229_1248916_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB38552.1|1248912_1250076_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB38553.1|1250183_1252394_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 5
CP031631	Streptococcus pyogenes strain MGAS28191 chromosome, complete genome	1892473	1530087	1535961	1892473		Streptococcus_phage(100.0%)	8	NA	NA
QBB38799.1|1530087_1530915_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB38800.1|1530988_1531345_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB38801.1|1531643_1532273_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB38802.1|1532319_1532712_-	hypothetical protein	NA	NA	NA	NA	NA
QBB38803.1|1532738_1533602_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB38804.1|1533606_1533930_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB38805.1|1534432_1535308_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB38806.1|1535325_1535961_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 6
CP031631	Streptococcus pyogenes strain MGAS28191 chromosome, complete genome	1892473	1798908	1819133	1892473	integrase,holin	Streptococcus_phage(56.25%)	27	1802107:1802127	1816434:1816454
QBB39033.1|1798908_1800129_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB39202.1|1800139_1802122_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1802107:1802127	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB39203.1|1802216_1803362_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB39034.1|1803616_1803760_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB39035.1|1804621_1805389_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB39036.1|1805542_1805749_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB39037.1|1805782_1805983_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB39038.1|1806003_1806411_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB39039.1|1806822_1807350_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB39040.1|1807576_1807771_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB39041.1|1807970_1808162_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB39042.1|1808302_1808755_+	hypothetical protein	NA	NA	NA	NA	NA
QBB39043.1|1808856_1809189_+	hypothetical protein	NA	NA	NA	NA	NA
QBB39204.1|1809188_1809380_+	hypothetical protein	NA	NA	NA	NA	NA
QBB39044.1|1809391_1809721_+	hypothetical protein	NA	NA	NA	NA	NA
QBB39045.1|1809723_1809996_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB39046.1|1809996_1810863_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB39047.1|1810874_1812269_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB39048.1|1812562_1812817_+	hypothetical protein	NA	NA	NA	NA	NA
QBB39049.1|1812813_1812987_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB39050.1|1813167_1813677_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB39051.1|1813750_1814239_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB39052.1|1814463_1814646_+	hypothetical protein	NA	NA	NA	NA	NA
QBB39053.1|1814642_1815005_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB39054.1|1814979_1815363_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB39055.1|1815527_1816181_+	hypothetical protein	NA	NA	NA	NA	NA
QBB39056.1|1816577_1819133_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1816434:1816454	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 7
CP031631	Streptococcus pyogenes strain MGAS28191 chromosome, complete genome	1892473	1845543	1855531	1892473	integrase	Streptococcus_phage(75.0%)	15	1845117:1845131	1852679:1852693
1845117:1845131	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB39091.1|1845543_1845717_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB39092.1|1846003_1847617_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB39093.1|1847606_1848128_-	hypothetical protein	NA	NA	NA	NA	NA
QBB39094.1|1848137_1848506_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB39205.1|1848414_1848606_-	hypothetical protein	NA	NA	NA	NA	NA
QBB39095.1|1848605_1848938_-	hypothetical protein	NA	NA	NA	NA	NA
QBB39096.1|1848949_1849132_-	hypothetical protein	NA	NA	NA	NA	NA
QBB39097.1|1849352_1849622_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB39098.1|1849651_1850218_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB39099.1|1850233_1850422_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB39100.1|1850590_1851034_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB39101.1|1851213_1852377_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB39102.1|1852533_1853145_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1852679:1852693	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB39103.1|1853874_1854147_-	hypothetical protein	NA	NA	NA	NA	NA
QBB39104.1|1854163_1855531_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
