assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154225.1_ASM415422v1	CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	2	817969-818268	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	3,4,4	4	TypeII-A,TypeII-B,TypeII-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|CP031629.1_807463_808105_+,NA|35aa|down_1|CP031629.1_819554_819659_+	NA|452aa|up_9|CP031629.1_805984_807340_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|CP031629.1_807463_808105_+	NA	NA|377aa|up_7|CP031629.1_808167_809298_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|CP031629.1_809307_810060_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|CP031629.1_810059_810824_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|CP031629.1_810823_811456_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|CP031629.1_811900_816007_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|CP031629.1_816006_816876_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|CP031629.1_816872_817214_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|CP031629.1_817203_817866_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|378aa|down_0|CP031629.1_818416_819550_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|35aa|down_1|CP031629.1_819554_819659_+	NA	NA|611aa|down_2|CP031629.1_819718_821551_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|310aa|down_3|CP031629.1_821977_822907_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_4|CP031629.1_823092_823530_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_5|CP031629.1_823659_824679_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_6|CP031629.1_824885_825311_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_7|CP031629.1_825329_825821_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_8|CP031629.1_825837_826647_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_9|CP031629.1_826643_827471_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
GCA_004154225.1_ASM415422v1	CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	3	1269980-1270142	2	PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACTCACCCATGAAGGGTGAGACT	33	0	0	NA	NA	I-C	2	2	TypeI-U?,TypeI-U,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|188aa|down_8|CP031629.1_1281112_1281676_-	NA|412aa|up_9|CP031629.1_1259913_1261149_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|CP031629.1_1261422_1262103_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|CP031629.1_1262244_1262718_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|CP031629.1_1262883_1263600_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|CP031629.1_1263613_1264693_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|CP031629.1_1264765_1266499_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|CP031629.1_1266495_1267236_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|CP031629.1_1267323_1268430_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|CP031629.1_1268472_1269096_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|CP031629.1_1269108_1269819_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|CP031629.1_1270289_1270583_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|CP031629.1_1270593_1271619_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|CP031629.1_1271615_1272290_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|CP031629.1_1272291_1273140_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|CP031629.1_1273144_1275040_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|CP031629.1_1275039_1275768_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|CP031629.1_1275900_1278309_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|CP031629.1_1278462_1281111_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|CP031629.1_1281112_1281676_-	NA	NA|67aa|down_9|CP031629.1_1281672_1281873_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCA_004154225.1_ASM415422v1	CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	4	1851411-1851507	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|CP031629.1_1846516_1846690_-,NA|538aa|up_8|CP031629.1_1846976_1848590_-,NA|174aa|up_7|CP031629.1_1848579_1849101_-,NA|123aa|up_6|CP031629.1_1849110_1849479_-,NA|64aa|up_5|CP031629.1_1849387_1849579_-,NA|111aa|up_4|CP031629.1_1849578_1849911_-,NA|61aa|up_3|CP031629.1_1849922_1850105_-,NA|90aa|up_2|CP031629.1_1850325_1850595_-,NA	NA|58aa|up_9|CP031629.1_1846516_1846690_-	NA	NA|538aa|up_8|CP031629.1_1846976_1848590_-	NA	NA|174aa|up_7|CP031629.1_1848579_1849101_-	NA	NA|123aa|up_6|CP031629.1_1849110_1849479_-	NA	NA|64aa|up_5|CP031629.1_1849387_1849579_-	NA	NA|111aa|up_4|CP031629.1_1849578_1849911_-	NA	NA|61aa|up_3|CP031629.1_1849922_1850105_-	NA	NA|90aa|up_2|CP031629.1_1850325_1850595_-	NA	NA|189aa|up_1|CP031629.1_1850624_1851191_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031629.1_1851206_1851395_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031629.1_1851563_1852007_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031629.1_1852186_1853350_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031629.1_1853506_1854118_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031629.1_1854847_1855120_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031629.1_1855136_1856504_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031629.1_1856533_1856986_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031629.1_1856982_1858959_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031629.1_1859048_1860947_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031629.1_1861070_1861388_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031629.1_1862163_1863285_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
