The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	1893446	36552	48865	1893446		Synechococcus_phage(28.57%)	8	NA	NA
QBB40944.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB40945.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB40946.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB40947.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB40948.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB40949.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB40950.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB40951.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	1893446	337869	343743	1893446		Streptococcus_phage(100.0%)	8	NA	NA
QBB41209.1|337869_338505_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
QBB41210.1|338522_339398_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB41211.1|339900_340224_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB41212.1|340228_341092_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB41213.1|341118_341511_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41214.1|341557_342187_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB41215.1|342485_342842_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB41216.1|342915_343743_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
>prophage 3
CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	1893446	395541	464850	1893446	head,portal,terminase,capsid,holin,tRNA,bacteriocin,tail,integrase	Streptococcus_phage(73.08%)	79	395074:395090	428763:428779
395074:395090	attL	TCAGATTTAAAAAAGTA	NA	NA	NA	NA
QBB41265.1|395541_396630_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	72.6	6.4e-152
QBB41266.1|396805_397357_-	hypothetical protein	NA	A7J267	Streptococcus_phage	94.0	1.5e-88
QBB41267.1|397367_397751_-	ImmA/IrrE family metallo-endopeptidase	NA	A7J268	Streptococcus_phage	99.2	1.5e-68
QBB41268.1|397764_398115_-	XRE family transcriptional regulator	NA	M1I9X0	Streptococcus_phage	85.3	1.2e-48
QBB41269.1|398753_398945_+	hypothetical protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
QBB41270.1|398965_399196_+	hypothetical protein	NA	A7J271	Streptococcus_phage	92.0	3.4e-31
QBB41271.1|399283_399541_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41272.1|399569_399740_+	hypothetical protein	NA	A7J273	Streptococcus_phage	92.9	9.0e-21
QBB41273.1|399936_400320_+	hypothetical protein	NA	A7J274	Streptococcus_phage	93.7	5.9e-60
QBB41274.1|400464_400668_+	hypothetical protein	NA	A7J276	Streptococcus_phage	94.0	1.2e-30
QBB41275.1|400755_401055_+	hypothetical protein	NA	A7J277	Streptococcus_phage	96.0	3.7e-41
QBB41276.1|401054_402212_+	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	99.5	2.2e-219
QBB41277.1|402225_402789_+	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	5.6e-51
QBB41278.1|402831_404754_+	DNA polymerase	NA	A7J280	Streptococcus_phage	98.3	0.0e+00
QBB41279.1|404758_407143_+	DNA primase	NA	A7J282	Streptococcus_phage	98.0	5.7e-286
QBB41280.1|407508_407784_+	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
QBB41281.1|407780_409103_+	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	97.3	7.3e-251
QBB41282.1|409266_409539_+	hypothetical protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
QBB41283.1|409671_410088_+	transcriptional regulator	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
QBB42649.1|410177_410630_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBB41284.1|410619_411897_+|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	100.0	1.1e-246
QBB41285.1|411912_413445_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.6	9.9e-292
QBB41286.1|413404_414853_+|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	99.6	1.3e-277
QBB41287.1|414880_415069_+	hypothetical protein	NA	A7J294	Streptococcus_phage	100.0	7.4e-24
QBB41288.1|415073_415340_+	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
QBB41289.1|415507_416077_+	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	99.5	7.4e-83
QBB41290.1|416089_416977_+|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	100.0	2.1e-161
QBB41291.1|416988_417345_+	hypothetical protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
QBB41292.1|417355_417634_+	hypothetical protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
QBB41293.1|417630_417975_+	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
QBB41294.1|417978_418338_+	hypothetical protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
QBB41295.1|418349_418949_+|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
QBB41296.1|419002_419458_+	hypothetical protein	NA	A7J2A3	Streptococcus_phage	98.0	3.5e-75
QBB41297.1|419532_419766_+	hypothetical protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
QBB41298.1|419780_424163_+|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	75.9	3.3e-223
QBB41299.1|424174_425017_+|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	97.9	8.8e-157
QBB41300.1|425026_427009_+	peptidase	NA	A7J2A7	Streptococcus_phage	94.7	0.0e+00
QBB41301.1|428285_428933_+	hypothetical protein	NA	A3F658	Streptococcus_phage	47.0	1.4e-50
428763:428779	attR	TACTTTTTTAAATCTGA	NA	NA	NA	NA
QBB41302.1|428943_430980_+	hyaluronidase	NA	Q938J9	Temperate_phage	71.1	2.4e-176
QBB41303.1|430991_431429_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	98.6	9.1e-73
QBB41304.1|431425_432043_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
QBB41305.1|432052_432325_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	7.2e-36
QBB41306.1|432321_432549_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
QBB41307.1|432664_433867_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	99.8	2.8e-241
QBB41308.1|434080_434704_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41309.1|434817_435804_-	deoxyribonuclease	NA	A7J2B8	Streptococcus_phage	100.0	1.4e-169
QBB41310.1|436036_436219_+	Paratox	NA	A3F673	Streptococcus_phage	83.3	1.5e-21
QBB41311.1|436459_436693_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBB41312.1|436707_436890_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
QBB42650.1|438084_438312_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBB41313.1|438324_438525_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
QBB41314.1|438849_439014_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBB41315.1|439063_439360_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41316.1|439538_439940_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41317.1|440190_441261_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41318.1|441357_441756_+	histidine kinase	NA	NA	NA	NA	NA
QBB41319.1|442103_442373_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41320.1|442894_443137_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41321.1|443443_444310_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
QBB41322.1|444481_445309_+	formamidopyrimidine-DNA glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	1.1e-15
QBB42651.1|445305_445899_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
QBB41323.1|446088_447591_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	41.0	4.4e-74
QBB41324.1|447712_448906_+	MFS transporter	NA	NA	NA	NA	NA
QBB41325.1|448902_449049_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
QBB41326.1|449094_449331_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
QBB41327.1|449424_451758_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	2.3e-90
QBB41328.1|451760_452228_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
QBB41329.1|452233_452953_+	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA	NA
QBB41330.1|453069_453717_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
QBB41331.1|453766_454693_-	DUF979 domain-containing protein	NA	NA	NA	NA	NA
QBB41332.1|454692_455376_-	DUF969 domain-containing protein	NA	NA	NA	NA	NA
QBB41333.1|455586_456513_-	glycosyltransferase	NA	V5USA4	Oenococcus_phage	47.5	2.0e-77
QBB41334.1|456657_457035_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
QBB41335.1|457045_457711_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
QBB41336.1|457759_458845_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
QBB41337.1|459018_460020_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
QBB41338.1|460150_461149_+	glycosyltransferase	NA	NA	NA	NA	NA
QBB41339.1|461150_462485_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
QBB41340.1|462906_464850_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
>prophage 4
CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	1893446	662870	673474	1893446		Streptococcus_phage(57.14%)	9	NA	NA
QBB41507.1|662870_665081_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
QBB41508.1|665188_666352_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB41509.1|666348_667035_+	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB41510.1|667128_668295_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB41511.1|668355_668697_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB41512.1|668918_670271_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB41513.1|670358_671627_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB41514.1|671656_672097_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41515.1|672331_673474_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
>prophage 5
CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	1893446	993331	1092921	1893446	head,portal,terminase,capsid,transposase,tRNA,tail,integrase	Streptococcus_phage(40.3%)	114	1026684:1026743	1072856:1072951
QBB41812.1|993331_994216_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
QBB41813.1|994331_995672_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB41814.1|995768_996725_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB41815.1|996735_997332_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB41816.1|997423_1000060_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB41817.1|1000074_1000776_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB41818.1|1000893_1001436_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB41819.1|1001578_1002220_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB41820.1|1002382_1002874_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB41821.1|1002881_1003082_-	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB41822.1|1003122_1003662_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB41823.1|1003674_1003863_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB41824.1|1003873_1004485_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB41825.1|1004521_1004770_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB41826.1|1005132_1007451_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB41827.1|1007979_1009302_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB41828.1|1009421_1010657_+	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB41829.1|1011026_1011800_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41830.1|1012169_1013006_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB41831.1|1013021_1013651_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB41832.1|1013660_1014302_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB41833.1|1014408_1014744_-	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB41834.1|1014939_1016754_-	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB41835.1|1016929_1017487_-	signal peptidase I	NA	NA	NA	NA	NA
QBB41836.1|1017704_1019207_-	pyruvate kinase	NA	NA	NA	NA	NA
QBB41837.1|1019269_1020283_-	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB41838.1|1020362_1023473_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB41839.1|1023657_1024029_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB41840.1|1024028_1024727_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB41841.1|1024736_1025522_+	ABC transporter permease	NA	NA	NA	NA	NA
QBB41842.1|1025648_1026263_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
1026684:1026743	attL	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTA	NA	NA	NA	NA
QBB41843.1|1026853_1027042_-	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB41844.1|1027281_1028040_+	DNAse	NA	NA	NA	NA	NA
QBB41845.1|1028150_1028858_+	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB41846.1|1028933_1030268_-	lysin	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
QBB41847.1|1030379_1030565_-	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB41848.1|1030561_1030858_-	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB41849.1|1030868_1031486_-	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB41850.1|1031488_1031650_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41851.1|1031663_1033559_-	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB41852.1|1033569_1033899_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41853.1|1033885_1035100_-	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB41854.1|1035096_1037151_-	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB41855.1|1037147_1037927_-|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB41856.1|1037958_1041594_-|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB42668.1|1041608_1041905_-	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB41857.1|1041979_1042333_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB42669.1|1042386_1043010_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB41858.1|1043064_1043454_-|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB41859.1|1043450_1043816_-	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB41860.1|1043796_1044105_-	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB41861.1|1044101_1044455_-	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB41862.1|1044468_1044711_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41863.1|1044720_1045803_-|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB41864.1|1045805_1046186_-|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB41865.1|1046195_1046729_-	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB41866.1|1046872_1047139_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB41867.1|1047141_1047456_-	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB41868.1|1047525_1047711_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41869.1|1047714_1049277_-|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB41870.1|1049257_1050760_-|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.3	4.1e-141
QBB41871.1|1050771_1052079_-|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB42670.1|1052056_1052524_-|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB41872.1|1052586_1052772_+	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB41873.1|1052823_1053201_+	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB41874.1|1053338_1053800_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41875.1|1053818_1054733_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41876.1|1055310_1055745_-	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB42671.1|1056193_1056673_-	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB41877.1|1056677_1057310_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB41878.1|1057311_1057596_-	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB41879.1|1057759_1057996_-	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB41880.1|1057995_1058241_-	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB41881.1|1058237_1058594_-	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB41882.1|1058577_1058928_-	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB41883.1|1058881_1059751_-	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB41884.1|1060019_1061573_-	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB41885.1|1061590_1062073_-	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB41886.1|1062077_1063481_-	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB41887.1|1063516_1064200_-	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB41888.1|1064196_1064481_-	hypothetical protein	NA	NA	NA	NA	NA
QBB41889.1|1064477_1064672_-	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB41890.1|1064671_1065001_-	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB41891.1|1065081_1065219_-	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB41892.1|1065215_1065512_-	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB41893.1|1065590_1065776_-	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB41894.1|1065942_1066182_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41895.1|1066331_1066541_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41896.1|1066499_1066745_-	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB41897.1|1066799_1067309_+	hypothetical protein	NA	NA	NA	NA	NA
QBB41898.1|1067416_1067644_-	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB41899.1|1067717_1068104_+	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB41900.1|1068092_1068302_-	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB41901.1|1068355_1068955_+	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB41902.1|1068984_1069143_-	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB41903.1|1069201_1069417_+	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB41904.1|1069909_1070653_+	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB41905.1|1070665_1071475_+	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	2.9e-24
QBB41906.1|1071724_1072813_+|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB41907.1|1073175_1073796_+	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
1072856:1072951	attR	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTACATCAAGGTTTTTTCTTTTTGTCTTGTTCATGAGTT	NA	NA	NA	NA
QBB41908.1|1074052_1076317_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB41909.1|1076351_1077845_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB41910.1|1077960_1078980_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB41911.1|1079222_1080470_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB41912.1|1080743_1082105_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB41913.1|1082104_1082941_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB41914.1|1083095_1083896_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB41915.1|1084011_1084827_-	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB41916.1|1084848_1085709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB41917.1|1085705_1087013_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB41918.1|1087087_1089223_-	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB41919.1|1089248_1090952_-	alpha-glycosidase	NA	NA	NA	NA	NA
QBB41920.1|1091117_1092377_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB41921.1|1092696_1092921_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	1893446	1799881	1820106	1893446	holin,integrase	Streptococcus_phage(56.25%)	27	1803080:1803100	1817407:1817427
QBB42528.1|1799881_1801102_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB42699.1|1801112_1803095_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1803080:1803100	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB42700.1|1803189_1804335_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB42529.1|1804589_1804733_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB42530.1|1805594_1806362_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB42531.1|1806515_1806722_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB42532.1|1806755_1806956_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB42533.1|1806976_1807384_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB42534.1|1807795_1808323_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB42535.1|1808549_1808744_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB42536.1|1808943_1809135_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB42537.1|1809275_1809728_+	hypothetical protein	NA	NA	NA	NA	NA
QBB42538.1|1809829_1810162_+	hypothetical protein	NA	NA	NA	NA	NA
QBB42701.1|1810161_1810353_+	hypothetical protein	NA	NA	NA	NA	NA
QBB42539.1|1810364_1810694_+	hypothetical protein	NA	NA	NA	NA	NA
QBB42540.1|1810696_1810969_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB42541.1|1810969_1811836_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB42542.1|1811847_1813242_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB42543.1|1813535_1813790_+	hypothetical protein	NA	NA	NA	NA	NA
QBB42544.1|1813786_1813960_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB42545.1|1814140_1814650_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB42546.1|1814723_1815212_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB42547.1|1815436_1815619_+	hypothetical protein	NA	NA	NA	NA	NA
QBB42548.1|1815615_1815978_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB42549.1|1815952_1816336_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB42550.1|1816500_1817154_+	hypothetical protein	NA	NA	NA	NA	NA
QBB42551.1|1817550_1820106_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1817407:1817427	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 7
CP031629	Streptococcus pyogenes strain MGAS28278 chromosome, complete genome	1893446	1846516	1856504	1893446	integrase	Streptococcus_phage(75.0%)	15	1846090:1846104	1853652:1853666
1846090:1846104	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB42586.1|1846516_1846690_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB42587.1|1846976_1848590_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB42588.1|1848579_1849101_-	hypothetical protein	NA	NA	NA	NA	NA
QBB42589.1|1849110_1849479_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB42702.1|1849387_1849579_-	hypothetical protein	NA	NA	NA	NA	NA
QBB42590.1|1849578_1849911_-	hypothetical protein	NA	NA	NA	NA	NA
QBB42591.1|1849922_1850105_-	hypothetical protein	NA	NA	NA	NA	NA
QBB42592.1|1850325_1850595_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB42593.1|1850624_1851191_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB42594.1|1851206_1851395_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB42595.1|1851563_1852007_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB42596.1|1852186_1853350_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.3	1.1e-160
QBB42597.1|1853506_1854118_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1853652:1853666	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB42598.1|1854847_1855120_-	hypothetical protein	NA	NA	NA	NA	NA
QBB42599.1|1855136_1856504_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
