The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031627	Streptococcus pyogenes strain MGAS28360 chromosome, complete genome	1893041	36552	48865	1893041		Synechococcus_phage(28.57%)	8	NA	NA
QBB44443.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB44444.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB44445.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB44446.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB44447.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB44448.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB46127.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB44449.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031627	Streptococcus pyogenes strain MGAS28360 chromosome, complete genome	1893041	781989	854549	1893041	head,terminase,integrase,portal,transposase,tail,capsid	Streptococcus_phage(42.62%)	87	801960:802019	848133:848228
QBB45084.1|781989_782214_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB45085.1|782533_783793_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB45086.1|783958_785662_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB45087.1|785687_787823_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB45088.1|787897_789205_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB45089.1|789201_790062_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB45090.1|790083_790899_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB45091.1|791014_791815_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB45092.1|791969_792806_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB45093.1|792805_794167_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB45094.1|794440_795688_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB45095.1|795930_796950_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB45096.1|797065_798559_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB45097.1|798593_800858_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB45098.1|801114_801735_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
801960:802019	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
QBB45099.1|802097_803186_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB45100.1|803435_804245_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
QBB45101.1|804257_805001_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB45102.1|805493_805709_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB45103.1|805767_805926_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB45104.1|805955_806555_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB45105.1|806608_806818_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB45106.1|806806_807193_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB45107.1|807266_807494_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB45108.1|807601_808111_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45109.1|808165_808411_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB45110.1|808369_808579_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45111.1|808728_808968_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45112.1|809134_809320_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB45113.1|809398_809695_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB45114.1|809691_809829_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB45115.1|809909_810239_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB45116.1|810238_810433_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB45117.1|810429_810714_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45118.1|810710_811394_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB45119.1|811429_812833_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB45120.1|812837_813320_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB45121.1|813337_814891_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB45122.1|815159_816029_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB45123.1|815982_816333_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB45124.1|816316_816673_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB45125.1|816669_816915_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB45126.1|816914_817151_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB45127.1|817314_817599_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB45128.1|817600_818233_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB46162.1|818237_818717_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB45129.1|819165_819600_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB45130.1|820177_821092_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45131.1|821110_821572_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45132.1|821709_822087_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB45133.1|822138_822324_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB46163.1|822386_822854_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB45134.1|822831_824139_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB45135.1|824150_825653_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB45136.1|825633_827196_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB45137.1|827199_827385_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45138.1|827454_827769_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB45139.1|827771_828038_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB45140.1|828181_828715_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB45141.1|829106_830189_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB45142.1|830198_830441_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45143.1|830454_830808_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB45144.1|830804_831113_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB45145.1|831093_831459_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB45146.1|831455_831845_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB46164.1|831899_832523_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB45147.1|832576_832930_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB46165.1|833004_833301_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB45148.1|833315_836951_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB45149.1|836982_837762_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB45150.1|837758_839813_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB45151.1|839809_841024_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB45152.1|841010_841340_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45153.1|841350_843246_+	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB45154.1|843259_843421_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45155.1|843423_844041_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB45156.1|844051_844348_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB45157.1|844344_844530_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB45158.1|844641_845976_+	lysin	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
QBB45159.1|846051_846759_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB45160.1|846869_847628_-	DNAse	NA	NA	NA	NA	NA
QBB45161.1|847869_848058_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB45162.1|848648_849263_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
848133:848228	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB45163.1|849389_850175_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB45164.1|850184_850883_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB45165.1|850882_851254_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB45166.1|851438_854549_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
>prophage 3
CP031627	Streptococcus pyogenes strain MGAS28360 chromosome, complete genome	1893041	1201617	1212221	1893041		Streptococcus_phage(57.14%)	9	NA	NA
QBB45491.1|1201617_1202760_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB45492.1|1202994_1203435_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45493.1|1203464_1204733_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB45494.1|1204820_1206173_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB45495.1|1206394_1206736_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB45496.1|1206796_1207963_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB45497.1|1208056_1208743_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB45498.1|1208739_1209903_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB45499.1|1210010_1212221_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 4
CP031627	Streptococcus pyogenes strain MGAS28360 chromosome, complete genome	1893041	1435833	1522222	1893041	head,bacteriocin,terminase,portal,integrase,tail,holin,tRNA,capsid	Streptococcus_phage(67.86%)	96	1446239:1446254	1511181:1511196
QBB45692.1|1435833_1435998_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBB45693.1|1436322_1436523_-|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
QBB45694.1|1436535_1436763_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBB45695.1|1437957_1438140_-|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
QBB45696.1|1438154_1438388_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QBB45697.1|1438785_1439040_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45698.1|1439345_1439822_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
QBB45699.1|1439841_1440738_-	GTPase Era	NA	NA	NA	NA	NA
QBB45700.1|1440857_1441265_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QBB45701.1|1441245_1441743_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
QBB45702.1|1441901_1442477_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
QBB45703.1|1442522_1443575_-	PhoH family protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
QBB45704.1|1443733_1445506_-	oleate hydratase	NA	NA	NA	NA	NA
QBB45705.1|1445820_1447002_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	39.6	2.1e-15
1446239:1446254	attL	GCTTTTTGTGCTGCTG	NA	NA	NA	NA
QBB45706.1|1447157_1447373_-	YozE family protein	NA	NA	NA	NA	NA
QBB45707.1|1447369_1447879_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
QBB45708.1|1447951_1448809_-	RNA-binding protein	NA	NA	NA	NA	NA
QBB45709.1|1448917_1449475_-	ribosome recycling factor	NA	NA	NA	NA	NA
QBB45710.1|1449503_1450232_-	UMP kinase	NA	NA	NA	NA	NA
QBB45711.1|1450553_1451243_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
QBB45712.1|1451348_1451774_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
QBB45713.1|1452017_1452371_+	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
QBB45714.1|1452440_1454846_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	51.4	2.2e-88
QBB45715.1|1455062_1455869_+	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
QBB45716.1|1456015_1456870_-	metal ABC transporter permease	NA	NA	NA	NA	NA
QBB45717.1|1456870_1457596_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
QBB45718.1|1457659_1458592_-	metal ABC transporter substrate-binding lipoprotein	NA	NA	NA	NA	NA
QBB45719.1|1458736_1459384_+	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
QBB45720.1|1459482_1459824_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45721.1|1459974_1460670_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
QBB45722.1|1460689_1460941_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45723.1|1460940_1461495_-	NUDIX hydrolase	NA	NA	NA	NA	NA
QBB45724.1|1461525_1462908_-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
QBB45725.1|1463080_1464418_-	MFS transporter	NA	NA	NA	NA	NA
QBB45726.1|1464750_1465710_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
QBB45727.1|1465785_1466484_-	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.2e-10
QBB45728.1|1466476_1466713_-	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
QBB45729.1|1467271_1467454_-	Paratox	NA	A3F673	Streptococcus_phage	83.3	1.5e-21
QBB45730.1|1467686_1468673_+	deoxyribonuclease	NA	A7J2B8	Streptococcus_phage	100.0	1.4e-169
QBB45731.1|1468786_1469410_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45732.1|1469623_1470826_-	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	99.8	2.8e-241
QBB45733.1|1470941_1471169_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
QBB45734.1|1471165_1471438_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	7.2e-36
QBB45735.1|1471447_1472065_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	89.3	5.0e-77
QBB45736.1|1472061_1472499_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	98.6	9.1e-73
QBB45737.1|1472510_1474400_-	hyaluronidase	NA	Q938J9	Temperate_phage	79.3	4.0e-202
QBB45738.1|1474410_1474740_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45739.1|1474726_1475941_-	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB45740.1|1475937_1477920_-	peptidase	NA	A7J2A7	Streptococcus_phage	91.8	0.0e+00
QBB45741.1|1477929_1478772_-|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	97.9	8.8e-157
QBB45742.1|1478783_1483166_-|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	75.9	3.3e-223
QBB45743.1|1483180_1483414_-	hypothetical protein	NA	A7J2A4	Streptococcus_phage	97.4	6.4e-33
QBB45744.1|1483488_1483944_-	hypothetical protein	NA	A7J2A3	Streptococcus_phage	98.0	3.5e-75
QBB45745.1|1483997_1484597_-|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
QBB45746.1|1484608_1484968_-	hypothetical protein	NA	A7J2A1	Streptococcus_phage	97.5	4.4e-57
QBB45747.1|1484971_1485316_-	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
QBB45748.1|1485312_1485591_-	hypothetical protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
QBB45749.1|1485601_1485958_-	hypothetical protein	NA	A7J298	Streptococcus_phage	100.0	4.6e-59
QBB45750.1|1485969_1486857_-|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	100.0	2.1e-161
QBB45751.1|1486869_1487439_-	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	99.5	7.4e-83
QBB45752.1|1487606_1487873_-	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	1.1e-36
QBB45753.1|1487877_1488066_-	hypothetical protein	NA	A7J294	Streptococcus_phage	100.0	7.4e-24
QBB45754.1|1488093_1489542_-|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	99.6	1.3e-277
QBB45755.1|1489501_1491034_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.6	9.9e-292
QBB45756.1|1491049_1492327_-|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	100.0	1.1e-246
QBB46182.1|1492316_1492769_-|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBB45757.1|1492858_1493275_-	transcriptional regulator	NA	A7J289	Streptococcus_phage	99.3	3.3e-72
QBB45758.1|1493407_1493680_-	hypothetical protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
QBB45759.1|1493843_1495166_-	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	97.3	7.3e-251
QBB45760.1|1495162_1495438_-	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
QBB45761.1|1495803_1498188_-	DNA primase	NA	A7J282	Streptococcus_phage	98.0	5.7e-286
QBB45762.1|1498192_1500115_-	DNA polymerase	NA	A7J280	Streptococcus_phage	98.3	0.0e+00
QBB45763.1|1500157_1500721_-	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	5.6e-51
QBB45764.1|1500734_1501892_-	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	99.2	8.5e-219
QBB45765.1|1501891_1502191_-	hypothetical protein	NA	A7J277	Streptococcus_phage	99.0	2.3e-43
QBB45766.1|1502278_1502482_-	hypothetical protein	NA	A7J276	Streptococcus_phage	94.0	1.2e-30
QBB45767.1|1502626_1503010_-	hypothetical protein	NA	A7J274	Streptococcus_phage	93.7	5.9e-60
QBB45768.1|1503206_1503377_-	hypothetical protein	NA	A7J273	Streptococcus_phage	92.9	9.0e-21
QBB45769.1|1503405_1503663_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45770.1|1503750_1503981_-	hypothetical protein	NA	A7J271	Streptococcus_phage	92.0	3.4e-31
QBB45771.1|1504001_1504193_-	hypothetical protein	NA	A7J270	Streptococcus_phage	100.0	7.3e-27
QBB45772.1|1504831_1505182_+	XRE family transcriptional regulator	NA	M1I9X0	Streptococcus_phage	85.3	1.2e-48
QBB45773.1|1505195_1505579_+	ImmA/IrrE family metallo-endopeptidase	NA	A7J268	Streptococcus_phage	99.2	1.5e-68
QBB45774.1|1505589_1506141_+	hypothetical protein	NA	A7J267	Streptococcus_phage	94.0	1.5e-88
QBB45775.1|1506316_1507405_+|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	72.6	6.4e-152
QBB45776.1|1507773_1508355_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45777.1|1509381_1510080_+	exotoxin	NA	NA	NA	NA	NA
QBB45778.1|1510347_1510848_+	hypothetical protein	NA	NA	NA	NA	NA
QBB45779.1|1511220_1511472_-	hypothetical protein	NA	NA	NA	NA	NA
1511181:1511196	attR	GCTTTTTGTGCTGCTG	NA	NA	NA	NA
QBB45780.1|1511724_1512198_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45781.1|1514212_1514665_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45782.1|1515121_1515874_+	ADP-ribosyltransferase	NA	NA	NA	NA	NA
QBB45783.1|1516078_1518259_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	1.2e-170
QBB45784.1|1518225_1518714_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
QBB45785.1|1518717_1519731_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	52.7	1.6e-96
QBB45786.1|1520221_1522222_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	5.1e-86
>prophage 5
CP031627	Streptococcus pyogenes strain MGAS28360 chromosome, complete genome	1893041	1530559	1536433	1893041		Streptococcus_phage(100.0%)	8	NA	NA
QBB45792.1|1530559_1531387_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB45793.1|1531460_1531817_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB45794.1|1532115_1532745_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB45795.1|1532791_1533184_-	hypothetical protein	NA	NA	NA	NA	NA
QBB45796.1|1533210_1534074_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB45797.1|1534078_1534402_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB45798.1|1534904_1535780_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB45799.1|1535797_1536433_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 6
CP031627	Streptococcus pyogenes strain MGAS28360 chromosome, complete genome	1893041	1799489	1819715	1893041	integrase,holin	Streptococcus_phage(56.25%)	27	1802688:1802708	1817016:1817036
QBB46027.1|1799489_1800710_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB46192.1|1800720_1802703_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1802688:1802708	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB46193.1|1802797_1803943_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB46028.1|1804197_1804341_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB46029.1|1805202_1805970_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB46030.1|1806123_1806330_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB46031.1|1806363_1806564_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB46032.1|1806584_1806992_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB46033.1|1807403_1807931_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB46034.1|1808157_1808352_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB46035.1|1808551_1808743_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB46036.1|1808883_1809336_+	hypothetical protein	NA	NA	NA	NA	NA
QBB46037.1|1809437_1809770_+	hypothetical protein	NA	NA	NA	NA	NA
QBB46194.1|1809769_1809961_+	hypothetical protein	NA	NA	NA	NA	NA
QBB46038.1|1809972_1810302_+	hypothetical protein	NA	NA	NA	NA	NA
QBB46039.1|1810304_1810577_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB46040.1|1810577_1811444_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB46041.1|1811455_1812850_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB46042.1|1813143_1813398_+	hypothetical protein	NA	NA	NA	NA	NA
QBB46043.1|1813394_1813568_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB46044.1|1813748_1814258_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB46045.1|1814331_1814820_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB46046.1|1815044_1815227_+	hypothetical protein	NA	NA	NA	NA	NA
QBB46047.1|1815223_1815586_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB46048.1|1815615_1815945_+	DUF1492 domain-containing protein	NA	Q938L8	Temperate_phage	38.2	1.0e-07
QBB46049.1|1816109_1816763_+	hypothetical protein	NA	NA	NA	NA	NA
QBB46050.1|1817159_1819715_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1817016:1817036	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 7
CP031627	Streptococcus pyogenes strain MGAS28360 chromosome, complete genome	1893041	1846125	1856113	1893041	integrase	Streptococcus_phage(75.0%)	15	1845699:1845713	1853261:1853275
1845699:1845713	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB46084.1|1846125_1846299_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	57.9	2.5e-10
QBB46085.1|1846585_1848199_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB46086.1|1848188_1848710_-	hypothetical protein	NA	NA	NA	NA	NA
QBB46087.1|1848719_1849088_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB46196.1|1848996_1849188_-	hypothetical protein	NA	NA	NA	NA	NA
QBB46088.1|1849187_1849520_-	hypothetical protein	NA	NA	NA	NA	NA
QBB46089.1|1849531_1849714_-	hypothetical protein	NA	NA	NA	NA	NA
QBB46090.1|1849934_1850204_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB46091.1|1850233_1850800_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB46092.1|1850815_1851004_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB46093.1|1851172_1851616_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB46094.1|1851795_1852959_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB46095.1|1853115_1853727_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1853261:1853275	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB46096.1|1854456_1854729_-	hypothetical protein	NA	NA	NA	NA	NA
QBB46097.1|1854745_1856113_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
