assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154165.1_ASM415416v1	CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1	604144-604306	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-U, Type I-U?,Type I-C	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-U,TypeI-U?,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|CP031625.1_592609_593173_+,NA|174aa|down_4|CP031625.1_608345_608867_-,NA|64aa|down_7|CP031625.1_610426_610618_+	NA|60aa|up_9|CP031625.1_592433_592613_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|CP031625.1_592609_593173_+	NA	NA|883aa|up_7|CP031625.1_593174_595823_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|CP031625.1_595976_598385_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|CP031625.1_598517_599246_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|CP031625.1_599245_601141_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|CP031625.1_601145_601994_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|CP031625.1_601995_602670_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|CP031625.1_602666_603692_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|CP031625.1_603702_603996_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|CP031625.1_604466_605177_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|CP031625.1_605189_605813_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|CP031625.1_605855_606962_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|385aa|down_3|CP031625.1_607072_608227_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|174aa|down_4|CP031625.1_608345_608867_-	NA	NA|127aa|down_5|CP031625.1_608877_609258_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|120aa|down_6|CP031625.1_609271_609631_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|64aa|down_7|CP031625.1_610426_610618_+	NA	NA|243aa|down_8|CP031625.1_610628_611357_+	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|67aa|down_9|CP031625.1_611535_611736_-	pfam13619, KTSC, KTSC domain
GCA_004154165.1_ASM415416v1	CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	2	1098093-1098392	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-A,Type II-C,Type II-B	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	4,4,3	4	TypeII-A,TypeII-C,TypeII-B	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP031625.1_1096701_1096806_-,NA|214aa|down_8|CP031625.1_1108255_1108897_-	NA|276aa|up_9|CP031625.1_1088685_1089513_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP031625.1_1089509_1090319_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP031625.1_1090335_1090827_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP031625.1_1090845_1091271_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP031625.1_1091477_1092497_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP031625.1_1092626_1093064_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|423aa|up_3|CP031625.1_1093249_1094518_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP031625.1_1094809_1096642_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP031625.1_1096701_1096806_-	NA	NA|378aa|up_0|CP031625.1_1096810_1097944_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|CP031625.1_1098494_1099157_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP031625.1_1099146_1099488_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP031625.1_1099484_1100354_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP031625.1_1100353_1104460_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP031625.1_1104904_1105537_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP031625.1_1105536_1106301_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP031625.1_1106300_1107053_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP031625.1_1107062_1108193_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP031625.1_1108255_1108897_-	NA	NA|452aa|down_9|CP031625.1_1109020_1110376_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_004154165.1_ASM415416v1	CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	3	1851247-1851343	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP031625.1_1846352_1846526_-,NA|538aa|up_8|CP031625.1_1846812_1848426_-,NA|174aa|up_7|CP031625.1_1848415_1848937_-,NA|123aa|up_6|CP031625.1_1848946_1849315_-,NA|64aa|up_5|CP031625.1_1849223_1849415_-,NA|111aa|up_4|CP031625.1_1849414_1849747_-,NA|61aa|up_3|CP031625.1_1849758_1849941_-,NA|90aa|up_2|CP031625.1_1850161_1850431_-,NA	NA|58aa|up_9|CP031625.1_1846352_1846526_-	NA	NA|538aa|up_8|CP031625.1_1846812_1848426_-	NA	NA|174aa|up_7|CP031625.1_1848415_1848937_-	NA	NA|123aa|up_6|CP031625.1_1848946_1849315_-	NA	NA|64aa|up_5|CP031625.1_1849223_1849415_-	NA	NA|111aa|up_4|CP031625.1_1849414_1849747_-	NA	NA|61aa|up_3|CP031625.1_1849758_1849941_-	NA	NA|90aa|up_2|CP031625.1_1850161_1850431_-	NA	NA|189aa|up_1|CP031625.1_1850460_1851027_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031625.1_1851042_1851231_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031625.1_1851399_1851843_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031625.1_1852022_1853186_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031625.1_1853342_1853954_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031625.1_1854683_1854956_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031625.1_1854972_1856340_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031625.1_1856369_1856822_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031625.1_1856818_1858795_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031625.1_1858884_1860783_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031625.1_1860906_1861224_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031625.1_1861999_1863121_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
