The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1893263	36552	48865	1893263		Synechococcus_phage(28.57%)	8	NA	NA
QBB47913.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB47914.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB47915.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB47916.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB47917.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB47918.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB47919.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB47920.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1893263	588562	651299	1893263	integrase,transposase,tRNA,capsid,tail,portal,terminase	Temperate_phage(81.25%)	86	580553:580571	636366:636384
580553:580571	attL	TATCTGCTTGGGATAATAT	NA	NA	NA	NA
QBB48381.1|588562_589699_+|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	31.0	2.3e-43
QBB48382.1|590035_591169_+|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
QBB48383.1|591337_591592_+	DUF1912 family protein	NA	NA	NA	NA	NA
QBB48384.1|591612_592008_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
QBB48385.1|592030_592264_-	hypothetical protein	NA	NA	NA	NA	NA
QBB48386.1|592433_592613_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBB48387.1|592609_593173_+	shikimate kinase	NA	NA	NA	NA	NA
QBB48388.1|593174_595823_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.3e-150
QBB48389.1|595976_598385_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
QBB48390.1|598517_599246_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
QBB48391.1|599245_601141_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
QBB48392.1|601145_601994_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
QBB48393.1|601995_602670_+	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
QBB48394.1|602666_603692_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBB48395.1|603702_603996_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBB48396.1|604466_605177_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
QBB48397.1|605189_605813_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
QBB48398.1|605855_606962_+	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
QBB48399.1|607072_608227_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	100.0	2.8e-206
QBB48400.1|608345_608867_-	hypothetical protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
QBB48401.1|608877_609258_-	ImmA/IrrE family metallo-endopeptidase	NA	Q938N7	Temperate_phage	100.0	5.3e-69
QBB48402.1|609271_609631_-	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
QBB48403.1|610426_610618_+	hypothetical protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
QBB48404.1|610628_611357_+	oxidoreductase	NA	Q938N5	Temperate_phage	100.0	6.9e-134
QBB48405.1|611535_611736_-	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	72.3	6.3e-21
QBB48406.1|611724_611979_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48407.1|611905_612118_-	hypothetical protein	NA	NA	NA	NA	NA
QBB48408.1|612224_612482_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48409.1|612510_612696_+	hypothetical protein	NA	Q938N3	Temperate_phage	100.0	1.1e-24
QBB48410.1|612789_613047_+	transcriptional regulator	NA	A0A1S5SFN6	Streptococcus_phage	46.4	1.2e-11
QBB48411.1|613192_613582_+	DnaD domain protein	NA	Q938N2	Temperate_phage	99.2	1.1e-58
QBB48412.1|613562_613796_+	hypothetical protein	NA	Q938N1	Temperate_phage	100.0	5.0e-38
QBB48413.1|613792_613933_+	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	52.3	7.5e-05
QBB48414.1|613943_614198_+	hypothetical protein	NA	Q938N0	Temperate_phage	100.0	7.4e-43
QBB48415.1|614219_614702_+	hypothetical protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
QBB48416.1|614702_615377_+	single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	100.0	2.5e-106
QBB48417.1|615369_615789_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	100.0	1.6e-71
QBB48418.1|615794_615998_+	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
QBB48419.1|615997_616438_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.3	8.5e-79
QBB48420.1|616434_616791_+	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	85.6	1.6e-51
QBB48421.1|616787_617039_+	hypothetical protein	NA	Q938M4	Temperate_phage	98.8	2.6e-40
QBB48422.1|617032_617317_+	DUF3310 domain-containing protein	NA	Q938M3	Temperate_phage	100.0	5.4e-50
QBB48423.1|617313_617583_+	hypothetical protein	NA	Q938M2	Temperate_phage	100.0	4.0e-47
QBB48424.1|617592_617997_+	hypothetical protein	NA	Q938M1	Temperate_phage	100.0	6.0e-71
QBB48425.1|618160_618667_+	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	100.0	9.8e-95
QBB48426.1|619107_619548_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	100.0	5.0e-79
QBB48427.1|619693_619915_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48428.1|620024_620288_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48429.1|620262_620448_-	hypothetical protein	NA	NA	NA	NA	NA
QBB48430.1|620524_621043_+	chromosome partitioning protein ParB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
QBB48431.1|621021_621699_+	hypothetical protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
QBB49649.1|621821_622091_+	hypothetical protein	NA	B5SP24	Lactococcus_phage	51.1	2.8e-16
QBB48432.1|622151_622529_+	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	100.0	1.7e-67
QBB49650.1|622579_623053_+	hypothetical protein	NA	Q938L4	Temperate_phage	99.4	4.3e-76
QBB48433.1|623135_624347_+|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
QBB48434.1|624360_625863_+|portal	phage portal protein	portal	Q938L2	Temperate_phage	100.0	5.4e-282
QBB48435.1|625867_627346_+|capsid	capsid protein	capsid	Q938L1	Temperate_phage	100.0	8.2e-275
QBB48436.1|627317_627557_+	hypothetical protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
QBB48437.1|627618_627885_+	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
QBB48438.1|628010_628625_+	hypothetical protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
QBB48439.1|628628_629447_+|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
QBB48440.1|629500_629917_+	hypothetical protein	NA	Q938K7	Temperate_phage	100.0	1.1e-56
QBB48441.1|629906_630239_+|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	100.0	9.6e-59
QBB48442.1|630238_630595_+|capsid	capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
QBB48443.1|630591_630990_+|capsid	capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
QBB48444.1|630989_631475_+|tail	phage tail protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
QBB48445.1|631513_631948_+	hypothetical protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
QBB48446.1|631951_632533_+	hypothetical protein	NA	Q938K4	Temperate_phage	100.0	1.3e-106
QBB48447.1|632522_635783_+	tape measure domain-containing protein	NA	Q938K3	Temperate_phage	99.9	0.0e+00
QBB48448.1|635779_636496_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	100.0	2.9e-137
636366:636384	attR	TATCTGCTTGGGATAATAT	NA	NA	NA	NA
QBB48449.1|636492_638637_+	peptidase	NA	Q938K1	Temperate_phage	100.0	0.0e+00
QBB48450.1|638633_639647_+	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	100.0	1.2e-184
QBB48451.1|639661_641545_+	hyaluronidase	NA	Q938J9	Temperate_phage	100.0	2.8e-256
QBB48452.1|641556_641988_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
QBB48453.1|641990_642602_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	100.0	2.7e-91
QBB48454.1|642612_642909_+	hypothetical protein	NA	Q938J6	Temperate_phage	100.0	7.5e-47
QBB48455.1|642905_643091_+	hypothetical protein	NA	Q938J5	Temperate_phage	100.0	1.7e-25
QBB48456.1|643201_644404_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	100.0	3.3e-242
QBB48457.1|644543_645068_+	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
QBB48458.1|645055_645922_+	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
QBB48459.1|646225_647005_+	pyrogenic exotoxin SpeK	NA	Q938J1	Temperate_phage	100.0	5.4e-145
QBB48460.1|647480_648056_+	phospholipase	NA	Q938J0	Temperate_phage	100.0	1.7e-111
QBB48461.1|648049_648337_+	hypothetical protein	NA	Q938I9	Temperate_phage	100.0	2.4e-29
QBB48462.1|648401_648584_+	Paratox	NA	A3F673	Streptococcus_phage	76.7	2.6e-18
QBB48463.1|648828_649569_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	32.4	8.0e-05
QBB48464.1|649565_651299_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.2	3.9e-26
>prophage 3
CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1893263	823236	922826	1893263	integrase,transposase,tRNA,capsid,tail,portal,terminase,head	Streptococcus_phage(40.3%)	114	843207:843266	889379:889474
QBB48621.1|823236_823461_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB48622.1|823780_825040_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB48623.1|825205_826909_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB48624.1|826934_829070_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB48625.1|829144_830452_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB48626.1|830448_831309_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB48627.1|831330_832146_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB48628.1|832261_833062_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB48629.1|833216_834053_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB48630.1|834052_835414_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB48631.1|835687_836935_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB48632.1|837177_838197_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB48633.1|838312_839806_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB48634.1|839840_842105_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB48635.1|842361_842982_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
843207:843266	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
QBB48636.1|843344_844433_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB48637.1|844682_845492_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
QBB48638.1|845504_846248_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB48639.1|846740_846956_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB48640.1|847014_847173_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB48641.1|847202_847802_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB48642.1|847855_848065_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB48643.1|848053_848440_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB48644.1|848513_848741_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB48645.1|848848_849358_-	hypothetical protein	NA	NA	NA	NA	NA
QBB48646.1|849412_849658_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB48647.1|849616_849826_-	hypothetical protein	NA	NA	NA	NA	NA
QBB48648.1|849975_850215_-	hypothetical protein	NA	NA	NA	NA	NA
QBB48649.1|850381_850567_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB48650.1|850645_850942_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB48651.1|850938_851076_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB48652.1|851156_851486_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB48653.1|851485_851680_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB48654.1|851676_851961_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48655.1|851957_852641_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB48656.1|852676_854080_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB48657.1|854084_854567_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB48658.1|854584_856138_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB48659.1|856406_857276_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB48660.1|857229_857580_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB48661.1|857563_857920_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB48662.1|857916_858162_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB48663.1|858161_858398_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB48664.1|858561_858846_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB48665.1|858847_859480_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB49654.1|859484_859964_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB48666.1|860412_860847_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB48667.1|861424_862339_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48668.1|862357_862819_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48669.1|862956_863334_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB48670.1|863385_863571_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB49655.1|863633_864101_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB48671.1|864078_865386_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB48672.1|865397_866900_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB48673.1|866880_868443_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB48674.1|868446_868632_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48675.1|868701_869016_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB48676.1|869018_869285_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB48677.1|869428_869962_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB48678.1|869971_870352_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB48679.1|870354_871437_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB48680.1|871446_871689_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48681.1|871702_872056_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB48682.1|872052_872361_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB48683.1|872341_872707_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB48684.1|872703_873093_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB49656.1|873147_873771_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB48685.1|873824_874178_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB49657.1|874252_874549_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB48686.1|874563_878199_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB48687.1|878230_879010_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB48688.1|879006_881061_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB48689.1|881057_882272_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB48690.1|882273_882588_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48691.1|882598_884494_+	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB48692.1|884507_884669_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48693.1|884671_885289_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB48694.1|885299_885596_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB48695.1|885592_885778_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB48696.1|885889_887224_+	lysin	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
QBB48697.1|887299_888007_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB48698.1|888117_888876_-	DNAse	NA	NA	NA	NA	NA
QBB48699.1|889115_889304_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB48700.1|889894_890509_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
889379:889474	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB48701.1|890635_891421_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB48702.1|891430_892129_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB48703.1|892128_892500_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB48704.1|892684_895795_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB48705.1|895874_896888_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB48706.1|896950_898453_+	pyruvate kinase	NA	NA	NA	NA	NA
QBB48707.1|898670_899228_+	signal peptidase I	NA	NA	NA	NA	NA
QBB48708.1|899403_901218_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB48709.1|901413_901749_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB48710.1|901855_902497_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB48711.1|902506_903136_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB48712.1|903151_903988_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB48713.1|904357_905131_+	hypothetical protein	NA	NA	NA	NA	NA
QBB48714.1|905500_906736_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB48715.1|906855_908178_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB48716.1|908706_911025_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB48717.1|911387_911636_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB48718.1|911672_912284_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB48719.1|912294_912483_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB48720.1|912495_913035_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB48721.1|913075_913276_+	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB48722.1|913283_913775_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB48723.1|913937_914579_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB48724.1|914721_915264_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB48725.1|915381_916083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB48726.1|916097_918734_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB48727.1|918825_919422_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB48728.1|919432_920389_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB48729.1|920485_921826_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB48730.1|921941_922826_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 4
CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1893263	1242886	1253490	1893263		Streptococcus_phage(57.14%)	9	NA	NA
QBB49026.1|1242886_1244029_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB49027.1|1244263_1244704_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49028.1|1244733_1246002_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB49029.1|1246089_1247442_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB49030.1|1247663_1248005_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB49031.1|1248065_1249232_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB49032.1|1249325_1250012_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB49033.1|1250008_1251172_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB49034.1|1251279_1253490_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 5
CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1893263	1530939	1536813	1893263		Streptococcus_phage(100.0%)	8	NA	NA
QBB49279.1|1530939_1531767_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB49280.1|1531840_1532197_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB49281.1|1532495_1533125_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB49282.1|1533171_1533564_-	hypothetical protein	NA	NA	NA	NA	NA
QBB49283.1|1533590_1534454_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB49284.1|1534458_1534782_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB49285.1|1535284_1536160_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB49286.1|1536177_1536813_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 6
CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1893263	1799717	1819942	1893263	integrase,holin	Streptococcus_phage(56.25%)	27	1802916:1802936	1817243:1817263
QBB49515.1|1799717_1800938_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB49686.1|1800948_1802931_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1802916:1802936	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB49687.1|1803025_1804171_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB49516.1|1804425_1804569_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB49517.1|1805430_1806198_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB49518.1|1806351_1806558_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB49519.1|1806591_1806792_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB49520.1|1806812_1807220_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB49521.1|1807631_1808159_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB49522.1|1808385_1808580_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB49523.1|1808779_1808971_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB49524.1|1809111_1809564_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49525.1|1809665_1809998_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49688.1|1809997_1810189_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49526.1|1810200_1810530_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49527.1|1810532_1810805_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB49528.1|1810805_1811672_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB49529.1|1811683_1813078_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB49530.1|1813371_1813626_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49531.1|1813622_1813796_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB49532.1|1813976_1814486_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB49533.1|1814559_1815048_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB49534.1|1815272_1815455_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49535.1|1815451_1815814_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB49536.1|1815788_1816172_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB49537.1|1816336_1816990_+	hypothetical protein	NA	NA	NA	NA	NA
QBB49538.1|1817386_1819942_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1817243:1817263	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 7
CP031625	Streptococcus pyogenes strain MGAS28533 chromosome, complete genome	1893263	1846352	1856340	1893263	integrase	Streptococcus_phage(75.0%)	15	1845926:1845940	1853488:1853502
1845926:1845940	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB49573.1|1846352_1846526_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB49574.1|1846812_1848426_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB49575.1|1848415_1848937_-	hypothetical protein	NA	NA	NA	NA	NA
QBB49576.1|1848946_1849315_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB49689.1|1849223_1849415_-	hypothetical protein	NA	NA	NA	NA	NA
QBB49577.1|1849414_1849747_-	hypothetical protein	NA	NA	NA	NA	NA
QBB49578.1|1849758_1849941_-	hypothetical protein	NA	NA	NA	NA	NA
QBB49579.1|1850161_1850431_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB49580.1|1850460_1851027_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB49581.1|1851042_1851231_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB49582.1|1851399_1851843_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB49583.1|1852022_1853186_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB49584.1|1853342_1853954_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1853488:1853502	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB49585.1|1854683_1854956_-	hypothetical protein	NA	NA	NA	NA	NA
QBB49586.1|1854972_1856340_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
