The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	36552	48865	1905059		Synechococcus_phage(28.57%)	8	NA	NA
QBB51435.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB51436.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB51437.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB51438.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB51439.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB51440.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB53140.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB51441.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	567538	580612	1905059	holin,integrase	Streptococcus_phage(69.23%)	22	560061:560077	580814:580830
560061:560077	attL	TGAAAAAGAAATTAGTT	NA	NA	NA	NA
QBB53170.1|567538_568684_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB51887.1|568938_569082_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB51888.1|569943_570711_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB51889.1|570864_571071_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB51890.1|571104_571305_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB51891.1|571325_571733_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB51892.1|572144_572672_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB51893.1|572898_573093_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB51894.1|573292_573484_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB51895.1|574105_574438_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53171.1|574437_574629_+	hypothetical protein	NA	NA	NA	NA	NA
QBB51896.1|574640_574970_+	hypothetical protein	NA	NA	NA	NA	NA
QBB51897.1|574972_575245_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB51898.1|575245_576112_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB51899.1|576123_577518_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB51900.1|577811_578066_+	hypothetical protein	NA	NA	NA	NA	NA
QBB51901.1|578062_578236_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB51902.1|578416_578926_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB51903.1|578999_579488_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB51904.1|579712_579895_+	hypothetical protein	NA	NA	NA	NA	NA
QBB51905.1|579891_580254_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB51906.1|580228_580612_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
580814:580830	attR	TGAAAAAGAAATTAGTT	NA	NA	NA	NA
>prophage 3
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	794544	894134	1905059	tail,head,tRNA,transposase,portal,terminase,integrase,capsid	Streptococcus_phage(40.3%)	114	814515:814574	860687:860782
QBB52099.1|794544_794769_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB52100.1|795088_796348_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB52101.1|796513_798217_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB52102.1|798242_800378_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB52103.1|800452_801760_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB52104.1|801756_802617_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB52105.1|802638_803454_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB52106.1|803569_804370_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB52107.1|804524_805361_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB52108.1|805360_806722_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB52109.1|806995_808243_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB52110.1|808485_809505_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB52111.1|809620_811114_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB52112.1|811148_813413_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB52113.1|813669_814290_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
814515:814574	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
QBB52114.1|814652_815741_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB52115.1|815990_816800_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	3.8e-24
QBB52116.1|816812_817556_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB52117.1|818048_818264_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB52118.1|818322_818481_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB52119.1|818510_819110_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB52120.1|819163_819373_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB52121.1|819361_819748_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB52122.1|819821_820049_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB52123.1|820156_820666_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52124.1|820720_820966_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB52125.1|820924_821134_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52126.1|821283_821523_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52127.1|821689_821875_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB52128.1|821953_822250_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB52129.1|822246_822384_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB52130.1|822464_822794_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB52131.1|822793_822988_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB52132.1|822984_823269_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52133.1|823265_823949_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB52134.1|823984_825388_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB52135.1|825392_825875_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB52136.1|825892_827446_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB52137.1|827714_828584_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB52138.1|828537_828888_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB52139.1|828871_829228_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB52140.1|829224_829470_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB52141.1|829469_829706_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB52142.1|829869_830154_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB52143.1|830155_830788_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB53178.1|830792_831272_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB52144.1|831720_832155_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB52145.1|832732_833647_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52146.1|833665_834127_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52147.1|834264_834642_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB52148.1|834693_834879_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB53179.1|834941_835409_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB52149.1|835386_836694_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB52150.1|836705_838208_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB52151.1|838188_839751_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB52152.1|839754_839940_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52153.1|840009_840324_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB52154.1|840326_840593_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB52155.1|840736_841270_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB52156.1|841279_841660_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB52157.1|841662_842745_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB52158.1|842754_842997_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52159.1|843010_843364_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB52160.1|843360_843669_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB52161.1|843649_844015_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	7.7e-17
QBB52162.1|844011_844401_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB53180.1|844455_845079_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB52163.1|845132_845486_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB53181.1|845560_845857_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB52164.1|845871_849507_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB52165.1|849538_850318_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB52166.1|850314_852369_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB52167.1|852365_853580_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB52168.1|853566_853896_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52169.1|853906_855802_+	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB52170.1|855815_855977_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52171.1|855979_856597_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB52172.1|856607_856904_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB52173.1|856900_857086_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB52174.1|857197_858532_+	lysin	NA	Q5MY96	Streptococcus_phage	92.8	5.0e-247
QBB52175.1|858607_859315_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB52176.1|859425_860184_-	DNAse	NA	NA	NA	NA	NA
QBB52177.1|860423_860612_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB52178.1|861202_861817_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
860687:860782	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB52179.1|861943_862729_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB52180.1|862738_863437_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB52181.1|863436_863808_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB52182.1|863992_867103_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB52183.1|867182_868196_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB52184.1|868258_869761_+	pyruvate kinase	NA	NA	NA	NA	NA
QBB52185.1|869978_870536_+	signal peptidase I	NA	NA	NA	NA	NA
QBB52186.1|870711_872526_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB52187.1|872721_873057_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB52188.1|873163_873805_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB52189.1|873814_874444_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB52190.1|874459_875296_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB52191.1|875665_876439_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52192.1|876808_878044_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB52193.1|878163_879486_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB52194.1|880014_882333_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB52195.1|882695_882944_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB52196.1|882980_883592_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB52197.1|883602_883791_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB52198.1|883803_884343_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB52199.1|884383_884584_+	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB52200.1|884591_885083_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB52201.1|885245_885887_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB52202.1|886029_886572_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB52203.1|886689_887391_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB52204.1|887405_890042_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB52205.1|890133_890730_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB52206.1|890740_891697_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB52207.1|891793_893134_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB52208.1|893249_894134_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 4
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	1068093	1152458	1905059	tail,head,transposase,portal,terminase,capsid,integrase	Streptococcus_phage(68.63%)	86	1109453:1109501	1149686:1149734
QBB52372.1|1068093_1069227_-|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
QBB52373.1|1069777_1070440_-	type II-A CRISPR-associated protein Csn2	NA	NA	NA	NA	NA
QBB52374.1|1070429_1070771_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBB52375.1|1070767_1071637_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBB52376.1|1071636_1075743_-	type II CRISPR RNA-guided endonuclease Cas9	NA	NA	NA	NA	NA
QBB52377.1|1076187_1076820_-	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
QBB52378.1|1076819_1077584_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
QBB52379.1|1077583_1078336_-	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA	NA
QBB52380.1|1078345_1079476_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
QBB52381.1|1079538_1080180_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52382.1|1080303_1081659_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
QBB52383.1|1081712_1082669_-	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
QBB52384.1|1082665_1083517_-	TIGR00159 family protein	NA	NA	NA	NA	NA
QBB52385.1|1083629_1084967_+	Mur ligase family protein	NA	NA	NA	NA	NA
QBB52386.1|1084966_1085758_+	glutamine amidotransferase	NA	NA	NA	NA	NA
QBB52387.1|1085870_1086860_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	23.9	4.1e-12
QBB52388.1|1087092_1089510_+	hyaluronate lyase	NA	NA	NA	NA	NA
QBB52389.1|1089939_1090167_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52390.1|1090182_1091946_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.5	1.2e-33
QBB52391.1|1091978_1092266_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52392.1|1092276_1093686_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA	NA
QBB53186.1|1093870_1094869_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
QBB52393.1|1094927_1095896_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
QBB52394.1|1096181_1098089_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	2.0e-55
QBB52395.1|1098134_1098461_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52396.1|1098490_1099276_-	esterase family protein	NA	NA	NA	NA	NA
QBB52397.1|1099408_1101070_-	ribonuclease J 2	NA	NA	NA	NA	NA
QBB52398.1|1101273_1102032_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	28.3	5.9e-11
QBB52399.1|1102028_1102898_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB52400.1|1103073_1103238_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52401.1|1103242_1104241_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB52402.1|1104594_1106247_+	fibronectin/fibrinogen-binding protein	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	41.0	1.7e-07
QBB52403.1|1106305_1107553_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBB52404.1|1107542_1108724_-	AI-2E family transporter	NA	NA	NA	NA	NA
QBB52405.1|1108781_1109258_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
1109453:1109501	attL	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
QBB52406.1|1109861_1110572_-	exotoxin	NA	NA	NA	NA	NA
QBB53187.1|1110597_1111275_-	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	32.4	2.4e-27
QBB52407.1|1111548_1112883_-	lysin	NA	Q5MY96	Streptococcus_phage	92.8	5.0e-247
QBB52408.1|1112994_1113180_-	hypothetical protein	NA	Q938J5	Temperate_phage	95.1	1.9e-24
QBB52409.1|1113176_1113473_-	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB52410.1|1113482_1114115_-	hypothetical protein	NA	Q938J7	Temperate_phage	50.0	8.9e-45
QBB52411.1|1114117_1114546_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	84.3	8.1e-58
QBB52412.1|1114557_1116447_-	hyaluronidase	NA	Q938J9	Temperate_phage	75.9	1.4e-189
QBB52413.1|1116457_1116787_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52414.1|1116773_1117988_-	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB52415.1|1117984_1119967_-	peptidase	NA	A7J2A7	Streptococcus_phage	92.2	0.0e+00
QBB52416.1|1119976_1120819_-|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	97.9	8.8e-157
QBB52417.1|1120830_1125213_-|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	75.2	2.5e-226
QBB52418.1|1125227_1125461_-	hypothetical protein	NA	A7J2A4	Streptococcus_phage	98.7	1.3e-33
QBB52419.1|1125535_1125991_-	hypothetical protein	NA	A7J2A3	Streptococcus_phage	99.3	5.3e-76
QBB52420.1|1126044_1126644_-|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	97.1	1.7e-90
QBB52421.1|1126655_1127015_-	hypothetical protein	NA	A7J2A1	Streptococcus_phage	98.3	1.2e-57
QBB52422.1|1127018_1127363_-	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	98.2	5.1e-55
QBB52423.1|1127359_1127638_-	hypothetical protein	NA	A7J299	Streptococcus_phage	100.0	1.9e-47
QBB52424.1|1127648_1128005_-	hypothetical protein	NA	A7J298	Streptococcus_phage	99.2	7.9e-59
QBB52425.1|1128016_1128904_-|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	100.0	2.1e-161
QBB52426.1|1128916_1129486_-	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	100.0	1.9e-83
QBB52427.1|1129647_1129914_-	hypothetical protein	NA	Q938K9	Temperate_phage	96.6	2.9e-37
QBB52428.1|1129918_1130107_-	hypothetical protein	NA	A7J294	Streptococcus_phage	100.0	7.4e-24
QBB52429.1|1130134_1131583_-|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	99.8	1.2e-278
QBB52430.1|1131542_1133075_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	99.6	2.2e-291
QBB52431.1|1133090_1134368_-|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	99.8	6.9e-246
QBB53188.1|1134357_1134810_-|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBB52432.1|1134899_1135316_-	transcriptional regulator	NA	A7J289	Streptococcus_phage	98.6	9.5e-72
QBB52433.1|1135448_1135721_-	hypothetical protein	NA	A7J287	Streptococcus_phage	73.3	5.7e-25
QBB52434.1|1135884_1137207_-	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	97.3	5.6e-251
QBB52435.1|1137203_1137479_-	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	96.7	2.9e-45
QBB52436.1|1137864_1140249_-	DNA primase	NA	A7J282	Streptococcus_phage	94.2	1.6e-275
QBB52437.1|1140253_1142176_-	DNA polymerase	NA	A7J280	Streptococcus_phage	99.1	0.0e+00
QBB52438.1|1142218_1142782_-	DUF2815 family protein	NA	D2J040	Enterococcus_phage	58.5	3.3e-51
QBB52439.1|1142790_1143948_-	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	98.2	1.0e-216
QBB52440.1|1143947_1144247_-	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
QBB52441.1|1144334_1144538_-	hypothetical protein	NA	A7J276	Streptococcus_phage	100.0	9.4e-33
QBB52442.1|1144681_1145068_-	hypothetical protein	NA	A7J274	Streptococcus_phage	89.0	4.3e-58
QBB52443.1|1145064_1145268_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52444.1|1145260_1145431_-	hypothetical protein	NA	A7J273	Streptococcus_phage	89.3	1.2e-20
QBB52445.1|1145432_1145744_-	excisionase	NA	A1EAC3	Streptococcus_phage	86.3	5.0e-49
QBB52446.1|1145822_1146014_-	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	69.8	4.7e-18
QBB52447.1|1146064_1146853_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52448.1|1147344_1147695_+	XRE family transcriptional regulator	NA	M1PKY8	Streptococcus_phage	62.6	1.6e-35
QBB52449.1|1147697_1148084_+	ImmA/IrrE family metallo-endopeptidase	NA	M1PFJ2	Streptococcus_phage	55.5	3.3e-34
QBB52450.1|1148095_1148362_+	DUF4177 domain-containing protein	NA	NA	NA	NA	NA
QBB52451.1|1148489_1149629_+|integrase	site-specific integrase	integrase	A1EAB7	Streptococcus_phage	56.3	1.2e-119
QBB52452.1|1149711_1150752_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.9	1.1e-68
1149686:1149734	attR	TTGATATGACAAGGTTCTTTAATGTTTTATTTAATCACTTCTTGAGTTT	NA	NA	NA	NA
QBB52453.1|1150995_1151589_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	28.2	3.7e-08
QBB52454.1|1151588_1152458_-	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	2.4e-101
>prophage 5
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	1254392	1264996	1905059		Streptococcus_phage(57.14%)	9	NA	NA
QBB52551.1|1254392_1255535_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB52552.1|1255769_1256210_+	hypothetical protein	NA	NA	NA	NA	NA
QBB52553.1|1256239_1257508_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB52554.1|1257595_1258948_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB52555.1|1259169_1259511_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB52556.1|1259571_1260738_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB52557.1|1260831_1261518_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB52558.1|1261514_1262678_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB52559.1|1262785_1264996_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 6
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	1542936	1548810	1905059		Streptococcus_phage(100.0%)	8	NA	NA
QBB52805.1|1542936_1543764_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB52806.1|1543837_1544194_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB52807.1|1544492_1545122_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB52808.1|1545168_1545561_-	hypothetical protein	NA	NA	NA	NA	NA
QBB52809.1|1545587_1546451_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB52810.1|1546455_1546779_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB52811.1|1547281_1548157_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB52812.1|1548174_1548810_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 7
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	1811576	1831728	1905059	holin,integrase	Streptococcus_phage(56.25%)	26	1814775:1814795	1829029:1829049
QBB53040.1|1811576_1812797_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB53211.1|1812807_1814790_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1814775:1814795	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB53212.1|1814884_1816030_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB53041.1|1816284_1816428_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB53042.1|1817289_1818057_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB53043.1|1818210_1818417_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB53044.1|1818450_1818651_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB53045.1|1818671_1819079_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB53046.1|1819490_1820018_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB53047.1|1820244_1820439_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB53048.1|1820638_1820830_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB53049.1|1821451_1821784_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53213.1|1821783_1821975_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53050.1|1821986_1822316_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53051.1|1822318_1822591_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB53052.1|1822591_1823458_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB53053.1|1823469_1824864_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB53054.1|1825157_1825412_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53055.1|1825408_1825582_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB53056.1|1825762_1826272_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB53057.1|1826345_1826834_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB53058.1|1827058_1827241_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53059.1|1827237_1827600_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB53060.1|1827574_1827958_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB53061.1|1828122_1828776_+	hypothetical protein	NA	NA	NA	NA	NA
QBB53062.1|1829172_1831728_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1829029:1829049	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 8
CP031623	Streptococcus pyogenes strain MGAS28669 chromosome, complete genome	1905059	1858138	1868126	1905059	integrase	Streptococcus_phage(75.0%)	15	1857712:1857726	1865274:1865288
1857712:1857726	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB53097.1|1858138_1858312_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB53098.1|1858598_1860212_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB53099.1|1860201_1860723_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53100.1|1860732_1861101_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB53214.1|1861009_1861201_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53101.1|1861200_1861533_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53102.1|1861544_1861727_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53103.1|1861947_1862217_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB53104.1|1862246_1862813_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB53105.1|1862828_1863017_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB53106.1|1863185_1863629_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB53107.1|1863808_1864972_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB53108.1|1865128_1865740_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1865274:1865288	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB53109.1|1866469_1866742_-	hypothetical protein	NA	NA	NA	NA	NA
QBB53110.1|1866758_1868126_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
