assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004154065.1_ASM415406v1	CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1	646795-646957	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-C,Type I-U, Type I-U?	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|CP031619.1_635260_635824_+,NA|174aa|down_4|CP031619.1_650996_651518_-,NA|32aa|down_7|CP031619.1_652700_652796_-,NA|64aa|down_8|CP031619.1_653430_653622_+	NA|60aa|up_9|CP031619.1_635084_635264_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|CP031619.1_635260_635824_+	NA	NA|883aa|up_7|CP031619.1_635825_638474_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|CP031619.1_638627_641036_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|CP031619.1_641168_641897_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|CP031619.1_641896_643792_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|CP031619.1_643796_644645_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|CP031619.1_644646_645321_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|CP031619.1_645317_646343_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|CP031619.1_646353_646647_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|CP031619.1_647117_647828_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|CP031619.1_647840_648464_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|CP031619.1_648506_649613_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|385aa|down_3|CP031619.1_649723_650878_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|174aa|down_4|CP031619.1_650996_651518_-	NA	NA|127aa|down_5|CP031619.1_651528_651909_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|120aa|down_6|CP031619.1_651922_652282_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|32aa|down_7|CP031619.1_652700_652796_-	NA	NA|64aa|down_8|CP031619.1_653430_653622_+	NA	NA|243aa|down_9|CP031619.1_653632_654361_+	COG3561, COG3561, Phage anti-repressor protein [Transcription]
GCA_004154065.1_ASM415406v1	CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	2	1141559-1141858	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type II-B,Type II-A,Type II-C	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	4,4,3	4	TypeII-B,TypeII-A,TypeII-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP031619.1_1140167_1140272_-,NA|214aa|down_8|CP031619.1_1151721_1152363_-	NA|276aa|up_9|CP031619.1_1132321_1133149_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP031619.1_1133145_1133955_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP031619.1_1133971_1134463_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP031619.1_1134481_1134907_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP031619.1_1135113_1136133_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP031619.1_1136262_1136700_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|325aa|up_3|CP031619.1_1136885_1137860_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP031619.1_1138275_1140108_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP031619.1_1140167_1140272_-	NA	NA|378aa|up_0|CP031619.1_1140276_1141410_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	csn2|221aa|down_0|CP031619.1_1141960_1142623_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|CP031619.1_1142612_1142954_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP031619.1_1142950_1143820_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|CP031619.1_1143819_1147926_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|CP031619.1_1148370_1149003_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|CP031619.1_1149002_1149767_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|CP031619.1_1149766_1150519_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|CP031619.1_1150528_1151659_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|CP031619.1_1151721_1152363_-	NA	NA|452aa|down_9|CP031619.1_1152486_1153842_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCA_004154065.1_ASM415406v1	CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	3	1904248-1904344	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP031619.1_1899353_1899527_-,NA|538aa|up_8|CP031619.1_1899813_1901427_-,NA|174aa|up_7|CP031619.1_1901416_1901938_-,NA|123aa|up_6|CP031619.1_1901947_1902316_-,NA|64aa|up_5|CP031619.1_1902224_1902416_-,NA|111aa|up_4|CP031619.1_1902415_1902748_-,NA|61aa|up_3|CP031619.1_1902759_1902942_-,NA|90aa|up_2|CP031619.1_1903162_1903432_-,NA	NA|58aa|up_9|CP031619.1_1899353_1899527_-	NA	NA|538aa|up_8|CP031619.1_1899813_1901427_-	NA	NA|174aa|up_7|CP031619.1_1901416_1901938_-	NA	NA|123aa|up_6|CP031619.1_1901947_1902316_-	NA	NA|64aa|up_5|CP031619.1_1902224_1902416_-	NA	NA|111aa|up_4|CP031619.1_1902415_1902748_-	NA	NA|61aa|up_3|CP031619.1_1902759_1902942_-	NA	NA|90aa|up_2|CP031619.1_1903162_1903432_-	NA	NA|189aa|up_1|CP031619.1_1903461_1904028_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031619.1_1904043_1904232_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031619.1_1904400_1904844_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031619.1_1905023_1906187_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031619.1_1906343_1906955_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031619.1_1907685_1907958_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031619.1_1907974_1909342_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031619.1_1909371_1909824_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031619.1_1909820_1911797_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031619.1_1911886_1913785_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031619.1_1913908_1914226_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031619.1_1915001_1916123_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
