The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	36552	48865	1946265		Synechococcus_phage(28.57%)	8	NA	NA
QBB58456.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB58457.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB58458.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB58459.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB58460.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB58461.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB58462.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB58463.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	409042	464319	1946265	integrase,capsid,head,terminase,tail,portal,tRNA	Streptococcus_phage(77.55%)	67	421683:421699	452400:452416
QBB58780.1|409042_410320_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.2	1.6e-93
QBB58781.1|410711_411071_-	DUF956 family protein	NA	NA	NA	NA	NA
QBB58782.1|411184_412096_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
QBB58783.1|412112_412922_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
QBB58784.1|413010_414003_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
QBB58785.1|414354_415167_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
QBB58786.1|415430_416891_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	28.6	9.2e-37
QBB58787.1|417044_417506_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
QBB58788.1|417480_418005_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBB58789.1|418013_419297_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
QBB58790.1|419407_419764_-	chemotaxis protein	NA	NA	NA	NA	NA
QBB58791.1|419760_420180_-	HIT family protein	NA	NA	NA	NA	NA
QBB58792.1|420251_420977_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
QBB58793.1|420979_422014_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
421683:421699	attL	GACTAATGCTATTAAGC	NA	NA	NA	NA
QBB58794.1|422077_422869_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
QBB58795.1|422868_423504_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
QBB58796.1|423701_424781_-|integrase	site-specific integrase	integrase	A7J266	Streptococcus_phage	86.9	1.3e-176
QBB58797.1|424897_425449_-	hypothetical protein	NA	A7J267	Streptococcus_phage	92.3	3.4e-85
QBB58798.1|425459_425843_-	ImmA/IrrE family metallo-endopeptidase	NA	A7J268	Streptococcus_phage	99.2	5.3e-69
QBB58799.1|425856_426258_-	XRE family transcriptional regulator	NA	A7J269	Streptococcus_phage	72.9	1.1e-40
QBB58800.1|426668_427082_-	hypothetical protein	NA	NA	NA	NA	NA
QBB58801.1|427129_427345_+	transcriptional regulator	NA	M1Q1B4	Streptococcus_phage	76.8	4.2e-23
QBB58802.1|427406_427682_+	DNA-binding protein	NA	A7J272	Streptococcus_phage	95.6	5.9e-46
QBB58803.1|427678_427849_+	hypothetical protein	NA	A7J273	Streptococcus_phage	89.3	6.9e-21
QBB58804.1|427841_428045_+	hypothetical protein	NA	NA	NA	NA	NA
QBB58805.1|428041_428428_+	hypothetical protein	NA	A7J274	Streptococcus_phage	88.2	3.1e-56
QBB58806.1|428574_428778_+	hypothetical protein	NA	A7J276	Streptococcus_phage	95.5	2.3e-31
QBB58807.1|428865_429165_+	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
QBB58808.1|429164_430319_+	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	91.9	4.5e-204
QBB58809.1|430322_430721_+	hypothetical protein	NA	NA	NA	NA	NA
QBB58810.1|430731_431289_+	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	2.5e-51
QBB58811.1|431331_433254_+	DNA polymerase	NA	A7J280	Streptococcus_phage	96.7	0.0e+00
QBB58812.1|433258_435643_+	DNA primase	NA	A7J282	Streptococcus_phage	94.2	1.2e-275
QBB58813.1|436029_436305_+	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	100.0	9.1e-47
QBB58814.1|436301_437624_+	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	98.4	1.9e-254
QBB58815.1|437788_438055_+	hypothetical protein	NA	A7J287	Streptococcus_phage	65.2	5.4e-20
QBB58816.1|438063_438915_+	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	71.9	1.5e-100
QBB58817.1|438904_439096_+	hypothetical protein	NA	NA	NA	NA	NA
QBB58818.1|439092_439509_+	DUF722 domain-containing protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
QBB58819.1|439598_440051_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBB58820.1|440040_441318_+|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	97.6	1.3e-241
QBB58821.1|441333_442866_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	1.3e-286
QBB58822.1|442825_444271_+|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	92.9	3.4e-257
QBB58823.1|444301_444490_+	hypothetical protein	NA	A7J294	Streptococcus_phage	98.4	1.4e-22
QBB58824.1|444492_444759_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	88.6	1.7e-34
QBB58825.1|444914_445484_+	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	97.9	2.6e-80
QBB58826.1|445496_446384_+|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	99.7	3.6e-161
QBB58827.1|446395_446752_+	hypothetical protein	NA	A7J298	Streptococcus_phage	97.5	2.8e-56
QBB58828.1|446762_447041_+	hypothetical protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
QBB58829.1|447037_447382_+	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	99.1	6.1e-56
QBB58830.1|447385_447745_+	hypothetical protein	NA	A7J2A1	Streptococcus_phage	97.5	6.8e-58
QBB58831.1|447756_448356_+|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	98.9	4.1e-92
QBB58832.1|448409_448865_+	hypothetical protein	NA	A7J2A3	Streptococcus_phage	100.0	8.3e-77
QBB58833.1|448939_449173_+	hypothetical protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
QBB58834.1|449187_453570_+|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	76.4	3.2e-226
452400:452416	attR	GCTTAATAGCATTAGTC	NA	NA	NA	NA
QBB58835.1|453581_454424_+|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	99.6	8.5e-160
QBB58836.1|454433_456416_+	peptidase	NA	A7J2A7	Streptococcus_phage	92.5	0.0e+00
QBB58837.1|456412_457468_+	hyaluronoglucosaminidase	NA	A3F657	Streptococcus_phage	73.2	1.2e-126
QBB58838.1|457467_458103_+	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	67.6	2.2e-75
QBB58839.1|458113_460021_+	hyaluronidase	NA	Q938J9	Temperate_phage	61.7	3.8e-139
QBB58840.1|460029_460191_+	hypothetical protein	NA	NA	NA	NA	NA
QBB58841.1|460193_460814_+	hypothetical protein	NA	A3F662	Streptococcus_phage	88.8	8.3e-80
QBB58842.1|460824_461124_+	hypothetical protein	NA	Q938J6	Temperate_phage	82.3	3.5e-36
QBB58843.1|461120_461306_+	hypothetical protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
QBB58844.1|461416_462613_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	82.2	6.1e-196
QBB58845.1|462728_463901_-	streptodornase	NA	A7J2B8	Streptococcus_phage	49.8	4.7e-76
QBB58846.1|464139_464319_+	Paratox	NA	A3F673	Streptococcus_phage	83.1	5.6e-21
>prophage 3
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	631213	694946	1946265	integrase,capsid,holin,terminase,tail,portal,tRNA,transposase	Temperate_phage(54.84%)	91	623204:623222	680310:680328
623204:623222	attL	TATCTGCTTGGGATAATAT	NA	NA	NA	NA
QBB58977.1|631213_632350_+|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	31.0	2.3e-43
QBB58978.1|632686_633820_+|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
QBB58979.1|633988_634243_+	DUF1912 family protein	NA	NA	NA	NA	NA
QBB58980.1|634263_634659_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
QBB58981.1|634681_634915_-	hypothetical protein	NA	NA	NA	NA	NA
QBB58982.1|635084_635264_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBB58983.1|635260_635824_+	shikimate kinase	NA	NA	NA	NA	NA
QBB58984.1|635825_638474_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.3e-150
QBB58985.1|638627_641036_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
QBB58986.1|641168_641897_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
QBB58987.1|641896_643792_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
QBB58988.1|643796_644645_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
QBB58989.1|644646_645321_+	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
QBB58990.1|645317_646343_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBB58991.1|646353_646647_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBB58992.1|647117_647828_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
QBB58993.1|647840_648464_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
QBB58994.1|648506_649613_+	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
QBB58995.1|649723_650878_-|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	99.7	1.1e-205
QBB58996.1|650996_651518_-	hypothetical protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
QBB58997.1|651528_651909_-	ImmA/IrrE family metallo-endopeptidase	NA	Q938N7	Temperate_phage	99.2	5.3e-69
QBB58998.1|651922_652282_-	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
QBB58999.1|652700_652796_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
QBB59000.1|653430_653622_+	hypothetical protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
QBB59001.1|653632_654361_+	oxidoreductase	NA	Q938N5	Temperate_phage	99.6	3.4e-133
QBB59002.1|654539_654740_-	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	72.3	6.3e-21
QBB59003.1|654728_655067_+	hypothetical protein	NA	A0A141E1M0	Streptococcus_phage	69.5	3.8e-26
QBB59004.1|655040_655256_-	hypothetical protein	NA	A0A1S5SA41	Streptococcus_phage	61.4	1.9e-15
QBB59005.1|655361_655619_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59006.1|655647_655833_+	hypothetical protein	NA	Q938N3	Temperate_phage	95.1	1.2e-23
QBB60258.1|655926_656184_+	transcriptional regulator	NA	A0A141E1D1	Streptococcus_phage	40.5	8.9e-12
QBB59007.1|656359_656746_+	DnaD domain protein	NA	Q938N2	Temperate_phage	77.5	1.1e-48
QBB59008.1|656726_656939_+	hypothetical protein	NA	Q938N1	Temperate_phage	58.6	5.4e-15
QBB59009.1|656944_657085_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59010.1|657093_657300_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59011.1|657355_657685_+	hypothetical protein	NA	J7KGX3	Streptococcus_phage	87.2	1.1e-46
QBB59012.1|657687_658614_+	recombinase RecT	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
QBB59013.1|658610_658811_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59014.1|658803_659601_+	hypothetical protein	NA	J7KGZ1	Streptococcus_phage	82.3	8.9e-127
QBB59015.1|659954_660293_+	hypothetical protein	NA	M1PKX3	Streptococcus_phage	37.5	4.0e-12
QBB59016.1|660289_660802_+	hypothetical protein	NA	Q708P9	Streptococcus_phage	73.8	3.4e-63
QBB59017.1|660788_660986_+	hypothetical protein	NA	A3F626	Streptococcus_phage	86.5	9.9e-11
QBB59018.1|660979_661264_+	DUF3310 domain-containing protein	NA	A0A1P8VVP5	Streptococcus_phage	100.0	7.0e-50
QBB59019.1|661260_661530_+	hypothetical protein	NA	A0A1P8VVR6	Streptococcus_phage	100.0	3.1e-47
QBB59020.1|661539_661953_+	hypothetical protein	NA	Q938M1	Temperate_phage	65.2	6.4e-36
QBB59021.1|661949_662234_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	88.3	2.8e-38
QBB59022.1|662235_662871_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	69.4	2.0e-89
QBB59023.1|663137_663575_+	DUF1492 domain-containing protein	NA	A0A097PBF1	Streptococcus_pyogenes_phage	98.6	6.7e-76
QBB59024.1|663694_663913_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59025.1|663987_664251_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59026.1|664225_664411_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59027.1|664487_665006_+	chromosome partitioning protein ParB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
QBB59028.1|664984_665662_+	hypothetical protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
QBB60259.1|665784_666054_+	hypothetical protein	NA	B5SP24	Lactococcus_phage	51.1	2.8e-16
QBB59029.1|666114_666492_+	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	100.0	1.7e-67
QBB60260.1|666542_667016_+	hypothetical protein	NA	Q938L4	Temperate_phage	98.7	7.3e-76
QBB59030.1|667098_668310_+|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
QBB59031.1|668323_669826_+|portal	phage portal protein	portal	Q938L2	Temperate_phage	100.0	5.4e-282
QBB59032.1|669830_671309_+|capsid	capsid protein	capsid	Q938L1	Temperate_phage	99.8	5.3e-274
QBB59033.1|671280_671520_+	hypothetical protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
QBB59034.1|671581_671848_+	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
QBB59035.1|671973_672588_+	hypothetical protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
QBB59036.1|672591_673410_+|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
QBB59037.1|673463_673880_+	hypothetical protein	NA	Q938K7	Temperate_phage	99.1	3.3e-56
QBB59038.1|673869_674202_+|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	99.1	1.8e-57
QBB59039.1|674201_674558_+|capsid	capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
QBB59040.1|674554_674953_+|capsid	capsid protein	capsid	Q79S87	Temperate_phage	98.5	6.5e-70
QBB59041.1|674952_675414_+|tail	phage tail protein	tail	Q938K6	Temperate_phage	78.8	1.9e-60
QBB59042.1|675457_675892_+	hypothetical protein	NA	Q938K5	Temperate_phage	97.9	4.2e-70
QBB59043.1|675895_676477_+	hypothetical protein	NA	Q938K4	Temperate_phage	97.9	7.7e-104
QBB59044.1|676466_679727_+	tape measure domain-containing protein	NA	Q938K3	Temperate_phage	97.4	0.0e+00
QBB59045.1|679723_680440_+|tail	phage tail protein	tail	Q938K2	Temperate_phage	99.2	4.2e-136
680310:680328	attR	TATCTGCTTGGGATAATAT	NA	NA	NA	NA
QBB59046.1|680436_682584_+	peptidase	NA	Q938K1	Temperate_phage	93.1	0.0e+00
QBB59047.1|682580_683804_+	hypothetical protein	NA	A3F657	Streptococcus_phage	41.3	6.7e-49
QBB59048.1|683790_684120_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59049.1|684130_686017_+	hyaluronidase	NA	Q938J9	Temperate_phage	89.5	1.3e-229
QBB59050.1|686028_686460_+	DUF1617 family protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
QBB59051.1|686462_687080_+	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	88.8	1.7e-77
QBB59052.1|687089_687365_+	hypothetical protein	NA	A7J2B2	Streptococcus_phage	100.0	2.6e-41
QBB59053.1|687361_687589_+|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	5.8e-31
QBB59054.1|687704_688907_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	97.5	4.6e-236
QBB59055.1|689093_689333_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59056.1|689401_689617_-	XRE family transcriptional regulator	NA	B3GW25	Streptococcus_phage	52.1	3.7e-11
QBB59057.1|689618_690221_-	AP2 domain-containing protein	NA	A0A1S5SAA5	Streptococcus_phage	30.5	2.1e-19
QBB59058.1|690220_690595_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59059.1|690727_691084_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59060.1|691085_691559_-	hypothetical protein	NA	A3F671	Streptococcus_phage	92.4	1.4e-79
QBB59061.1|691598_691838_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59062.1|692048_692231_+	Paratox	NA	A3F673	Streptococcus_phage	78.3	6.9e-19
QBB59063.1|692475_693216_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	32.4	8.0e-05
QBB59064.1|693212_694946_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.2	3.9e-26
>prophage 4
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	866872	966462	1946265	integrase,capsid,head,terminase,tail,portal,tRNA,transposase	Streptococcus_phage(40.3%)	114	886843:886902	933015:933110
QBB59221.1|866872_867097_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB59222.1|867416_868676_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB59223.1|868841_870545_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB59224.1|870570_872706_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB59225.1|872780_874088_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB59226.1|874084_874945_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB59227.1|874966_875782_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB59228.1|875897_876698_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB59229.1|876852_877689_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB59230.1|877688_879050_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB59231.1|879323_880571_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB59232.1|880813_881833_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB59233.1|881948_883442_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB59234.1|883476_885741_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB59235.1|885997_886618_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
886843:886902	attL	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGA	NA	NA	NA	NA
QBB59236.1|886980_888069_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.6	3.0e-202
QBB59237.1|888318_889128_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	2.9e-24
QBB59238.1|889140_889884_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB59239.1|890376_890592_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB59240.1|890650_890809_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB59241.1|890838_891438_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB59242.1|891491_891701_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB59243.1|891689_892076_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB59244.1|892149_892377_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB59245.1|892484_892994_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59246.1|893048_893294_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB59247.1|893252_893462_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59248.1|893611_893851_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59249.1|894017_894203_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB59250.1|894281_894578_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB59251.1|894574_894712_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB59252.1|894792_895122_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB59253.1|895121_895316_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB59254.1|895312_895597_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59255.1|895593_896277_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB59256.1|896312_897716_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB59257.1|897720_898203_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB59258.1|898220_899774_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB59259.1|900042_900912_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB59260.1|900865_901216_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB59261.1|901199_901556_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB59262.1|901552_901798_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB59263.1|901797_902034_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB59264.1|902197_902482_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB59265.1|902483_903116_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB59266.1|903120_903600_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB59267.1|904048_904483_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB59268.1|905060_905975_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59269.1|905993_906455_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59270.1|906592_906970_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB59271.1|907021_907207_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB60264.1|907269_907737_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB59272.1|907714_909022_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB59273.1|909033_910536_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB59274.1|910516_912079_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB59275.1|912082_912268_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59276.1|912337_912652_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB59277.1|912654_912921_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB59278.1|913064_913598_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB59279.1|913607_913988_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB59280.1|913990_915073_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB59281.1|915082_915325_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59282.1|915338_915692_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB59283.1|915688_915997_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB59284.1|915977_916343_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB59285.1|916339_916729_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB60265.1|916783_917407_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB59286.1|917460_917814_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB60266.1|917888_918185_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB59287.1|918199_921835_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB59288.1|921866_922646_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB59289.1|922642_924697_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB59290.1|924693_925908_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB59291.1|925894_926224_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59292.1|926234_928130_+	hyaluronidase	NA	Q938J9	Temperate_phage	56.0	5.0e-75
QBB59293.1|928143_928305_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59294.1|928307_928925_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB59295.1|928935_929232_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB59296.1|929228_929414_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB59297.1|929525_930860_+	lysin	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
QBB59298.1|930935_931643_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB59299.1|931753_932512_-	DNAse	NA	NA	NA	NA	NA
QBB59300.1|932751_932940_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB59301.1|933530_934145_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
933015:933110	attR	AACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB59302.1|934271_935057_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB59303.1|935066_935765_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB59304.1|935764_936136_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB59305.1|936320_939431_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB59306.1|939510_940524_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB59307.1|940586_942089_+	pyruvate kinase	NA	NA	NA	NA	NA
QBB59308.1|942306_942864_+	signal peptidase I	NA	NA	NA	NA	NA
QBB59309.1|943039_944854_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB59310.1|945049_945385_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB59311.1|945491_946133_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB59312.1|946142_946772_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB59313.1|946787_947624_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB59314.1|947993_948767_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59315.1|949136_950372_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB59316.1|950491_951814_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB59317.1|952342_954661_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB59318.1|955023_955272_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB59319.1|955308_955920_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB59320.1|955930_956119_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB59321.1|956131_956671_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB59322.1|956711_956912_+	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB59323.1|956919_957411_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB59324.1|957573_958215_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB59325.1|958357_958900_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB59326.1|959017_959719_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB59327.1|959733_962370_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB59328.1|962461_963058_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB59329.1|963068_964025_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB59330.1|964121_965462_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB59331.1|965577_966462_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 5
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	1286353	1296957	1946265		Streptococcus_phage(57.14%)	9	NA	NA
QBB59628.1|1286353_1287496_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB59629.1|1287730_1288171_+	hypothetical protein	NA	NA	NA	NA	NA
QBB59630.1|1288200_1289469_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB59631.1|1289556_1290909_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB59632.1|1291130_1291472_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB59633.1|1291532_1292699_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB59634.1|1292792_1293479_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB59635.1|1293475_1294639_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB59636.1|1294746_1296957_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 6
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	1575128	1581002	1946265		Streptococcus_phage(100.0%)	8	NA	NA
QBB59880.1|1575128_1575956_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB59881.1|1576029_1576386_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB59882.1|1576684_1577314_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB59883.1|1577360_1577753_-	hypothetical protein	NA	NA	NA	NA	NA
QBB59884.1|1577779_1578643_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB59885.1|1578647_1578971_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB59886.1|1579473_1580349_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB59887.1|1580366_1581002_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 7
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	1853109	1872943	1946265	integrase,holin	Streptococcus_phage(56.25%)	26	1856308:1856328	1870244:1870264
QBB60127.1|1853109_1854330_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB60296.1|1854340_1856323_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1856308:1856328	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB60297.1|1856417_1857563_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB60128.1|1857817_1857961_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB60129.1|1858822_1859590_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB60130.1|1859743_1859950_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB60131.1|1859983_1860184_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB60132.1|1860204_1860612_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB60133.1|1861023_1861551_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB60134.1|1861777_1861972_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB60135.1|1862112_1862565_+	hypothetical protein	NA	NA	NA	NA	NA
QBB60136.1|1862666_1862999_+	hypothetical protein	NA	NA	NA	NA	NA
QBB60298.1|1862998_1863190_+	hypothetical protein	NA	NA	NA	NA	NA
QBB60137.1|1863201_1863531_+	hypothetical protein	NA	NA	NA	NA	NA
QBB60138.1|1863533_1863806_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB60139.1|1863806_1864673_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB60140.1|1864684_1866079_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB60141.1|1866372_1866627_+	hypothetical protein	NA	NA	NA	NA	NA
QBB60142.1|1866623_1866797_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB60143.1|1866977_1867487_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB60144.1|1867560_1868049_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB60145.1|1868273_1868456_+	hypothetical protein	NA	NA	NA	NA	NA
QBB60146.1|1868452_1868815_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB60147.1|1868789_1869173_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB60148.1|1869337_1869991_+	hypothetical protein	NA	NA	NA	NA	NA
QBB60149.1|1870387_1872943_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1870244:1870264	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 8
CP031619	Streptococcus pyogenes strain MGAS29284 chromosome, complete genome	1946265	1899353	1909342	1946265	integrase	Streptococcus_phage(75.0%)	15	1898927:1898941	1906489:1906503
1898927:1898941	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB60184.1|1899353_1899527_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB60185.1|1899813_1901427_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB60186.1|1901416_1901938_-	hypothetical protein	NA	NA	NA	NA	NA
QBB60187.1|1901947_1902316_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB60299.1|1902224_1902416_-	hypothetical protein	NA	NA	NA	NA	NA
QBB60188.1|1902415_1902748_-	hypothetical protein	NA	NA	NA	NA	NA
QBB60189.1|1902759_1902942_-	hypothetical protein	NA	NA	NA	NA	NA
QBB60190.1|1903162_1903432_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB60191.1|1903461_1904028_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB60192.1|1904043_1904232_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB60193.1|1904400_1904844_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB60194.1|1905023_1906187_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB60195.1|1906343_1906955_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1906489:1906503	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB60196.1|1907685_1907958_-	hypothetical protein	NA	NA	NA	NA	NA
QBB60197.1|1907974_1909342_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
