The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031617	Streptococcus pyogenes strain MGAS29409 chromosome, complete genome	1894040	36552	48865	1894040		Synechococcus_phage(28.57%)	8	NA	NA
QBB62144.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB62145.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB62146.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB62147.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB62148.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB62149.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB62150.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB62151.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031617	Streptococcus pyogenes strain MGAS29409 chromosome, complete genome	1894040	409045	464324	1894040	tail,tRNA,head,terminase,capsid,integrase,portal	Streptococcus_phage(77.55%)	67	421686:421702	452405:452421
QBB62467.1|409045_410323_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.2	1.6e-93
QBB62468.1|410714_411074_-	DUF956 family protein	NA	NA	NA	NA	NA
QBB62469.1|411187_412099_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
QBB62470.1|412115_412925_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
QBB62471.1|413013_414006_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
QBB62472.1|414357_415170_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
QBB62473.1|415433_416894_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	28.6	9.2e-37
QBB62474.1|417047_417509_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
QBB62475.1|417483_418008_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBB62476.1|418016_419300_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
QBB62477.1|419410_419767_-	chemotaxis protein	NA	NA	NA	NA	NA
QBB62478.1|419763_420183_-	HIT family protein	NA	NA	NA	NA	NA
QBB62479.1|420254_420980_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
QBB62480.1|420982_422017_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
421686:421702	attL	GACTAATGCTATTAAGC	NA	NA	NA	NA
QBB62481.1|422080_422872_+	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
QBB62482.1|422871_423507_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
QBB62483.1|423704_424784_-|integrase	site-specific integrase	integrase	A7J266	Streptococcus_phage	86.9	1.3e-176
QBB62484.1|424900_425452_-	hypothetical protein	NA	A7J267	Streptococcus_phage	92.3	3.4e-85
QBB62485.1|425462_425846_-	ImmA/IrrE family metallo-endopeptidase	NA	A7J268	Streptococcus_phage	99.2	5.3e-69
QBB62486.1|425859_426261_-	XRE family transcriptional regulator	NA	A7J269	Streptococcus_phage	72.9	1.1e-40
QBB62487.1|426671_427085_-	hypothetical protein	NA	NA	NA	NA	NA
QBB62488.1|427132_427348_+	transcriptional regulator	NA	M1Q1B4	Streptococcus_phage	76.8	4.2e-23
QBB62489.1|427409_427685_+	DNA-binding protein	NA	A7J272	Streptococcus_phage	95.6	5.9e-46
QBB62490.1|427681_427852_+	hypothetical protein	NA	A7J273	Streptococcus_phage	89.3	6.9e-21
QBB62491.1|427844_428048_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62492.1|428044_428431_+	hypothetical protein	NA	A7J274	Streptococcus_phage	88.2	3.1e-56
QBB62493.1|428577_428781_+	hypothetical protein	NA	A7J276	Streptococcus_phage	95.5	2.3e-31
QBB62494.1|428868_429168_+	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
QBB62495.1|429167_430322_+	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	91.9	4.5e-204
QBB62496.1|430325_430724_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62497.1|430734_431292_+	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	2.5e-51
QBB62498.1|431334_433257_+	DNA polymerase	NA	A7J280	Streptococcus_phage	96.7	0.0e+00
QBB62499.1|433261_435646_+	DNA primase	NA	A7J282	Streptococcus_phage	94.2	1.2e-275
QBB62500.1|436034_436310_+	VRR-NUC domain-containing protein	NA	A7J283	Streptococcus_phage	100.0	9.1e-47
QBB62501.1|436306_437629_+	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	98.4	1.9e-254
QBB62502.1|437793_438060_+	hypothetical protein	NA	A7J287	Streptococcus_phage	65.2	5.4e-20
QBB62503.1|438068_438920_+	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	71.9	1.5e-100
QBB62504.1|438909_439101_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62505.1|439097_439514_+	DUF722 domain-containing protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
QBB62506.1|439603_440056_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBB62507.1|440045_441323_+|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	97.6	1.3e-241
QBB62508.1|441338_442871_+|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	1.3e-286
QBB62509.1|442830_444276_+|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	92.9	3.4e-257
QBB62510.1|444306_444495_+	hypothetical protein	NA	A7J294	Streptococcus_phage	98.4	1.4e-22
QBB62511.1|444497_444764_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	88.6	1.7e-34
QBB62512.1|444919_445489_+	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	97.9	2.6e-80
QBB62513.1|445501_446389_+|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	99.7	3.6e-161
QBB62514.1|446400_446757_+	hypothetical protein	NA	A7J298	Streptococcus_phage	97.5	2.8e-56
QBB62515.1|446767_447046_+	hypothetical protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
QBB62516.1|447042_447387_+	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	99.1	6.1e-56
QBB62517.1|447390_447750_+	hypothetical protein	NA	A7J2A1	Streptococcus_phage	97.5	6.8e-58
QBB62518.1|447761_448361_+|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	98.9	4.1e-92
QBB62519.1|448414_448870_+	hypothetical protein	NA	A7J2A3	Streptococcus_phage	100.0	8.3e-77
QBB62520.1|448944_449178_+	hypothetical protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
QBB62521.1|449192_453575_+|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	76.4	3.2e-226
452405:452421	attR	GCTTAATAGCATTAGTC	NA	NA	NA	NA
QBB62522.1|453586_454429_+|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	99.6	8.5e-160
QBB62523.1|454438_456421_+	peptidase	NA	A7J2A7	Streptococcus_phage	92.5	0.0e+00
QBB62524.1|456417_457473_+	hyaluronoglucosaminidase	NA	A3F657	Streptococcus_phage	73.2	1.2e-126
QBB62525.1|457472_458108_+	hypothetical protein	NA	A0A097PBF7	Streptococcus_pyogenes_phage	67.6	2.2e-75
QBB62526.1|458118_460026_+	hyaluronidase	NA	Q938J9	Temperate_phage	61.7	3.8e-139
QBB62527.1|460034_460196_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62528.1|460198_460819_+	hypothetical protein	NA	A3F662	Streptococcus_phage	88.8	8.3e-80
QBB62529.1|460829_461129_+	hypothetical protein	NA	Q938J6	Temperate_phage	82.3	3.5e-36
QBB62530.1|461125_461311_+	hypothetical protein	NA	Q938J5	Temperate_phage	93.4	9.5e-24
QBB62531.1|461421_462618_+	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	82.2	6.1e-196
QBB62532.1|462733_463906_-	streptodornase	NA	A7J2B8	Streptococcus_phage	49.8	4.7e-76
QBB62533.1|464144_464324_+	Paratox	NA	A3F673	Streptococcus_phage	83.1	5.6e-21
>prophage 3
CP031617	Streptococcus pyogenes strain MGAS29409 chromosome, complete genome	1894040	823649	923239	1894040	tail,tRNA,transposase,head,terminase,capsid,integrase,portal	Streptococcus_phage(40.3%)	114	843617:843676	889789:889887
QBB62836.1|823649_823874_-|transposase	transposase	transposase	NA	NA	NA	NA
QBB62837.1|824193_825453_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB62838.1|825618_827322_+	alpha-glycosidase	NA	NA	NA	NA	NA
QBB62839.1|827347_829483_+	cyclomaltodextrin glucanotransferase	NA	NA	NA	NA	NA
QBB62840.1|829557_830865_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB62841.1|830861_831722_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB62842.1|831743_832559_+	maltodextrose utilization protein malA	NA	NA	NA	NA	NA
QBB62843.1|832674_833475_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBB62844.1|833629_834466_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB62845.1|834465_835827_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
QBB62846.1|836100_837348_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
QBB62847.1|837590_838610_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.8	5.7e-17
QBB62848.1|838725_840219_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBB62849.1|840253_842518_+	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
QBB62850.1|842774_843395_-	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
843617:843676	attL	GGAAACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTA	NA	NA	NA	NA
QBB62851.1|843757_844846_-|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	98.3	6.8e-202
QBB62852.1|845095_845905_-	MazF family toxin-antitoxin system	NA	J7KDP1	Streptococcus_phage	35.8	2.9e-24
QBB62853.1|845917_846661_-	helix-turn-helix domain-containing protein	NA	A0A1S5S8T5	Streptococcus_phage	62.9	2.5e-75
QBB62854.1|847153_847369_-	hypothetical protein	NA	J7KBX0	Streptococcus_phage	95.7	2.5e-28
QBB62855.1|847427_847586_+	hypothetical protein	NA	J7KH24	Streptococcus_phage	90.4	8.4e-21
QBB62856.1|847615_848215_-	hypothetical protein	NA	A0A097PAT4	Streptococcus_pyogenes_phage	100.0	3.1e-108
QBB62857.1|848268_848478_+	hypothetical protein	NA	A0A097PAQ9	Streptococcus_pyogenes_phage	100.0	1.7e-32
QBB62858.1|848466_848853_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	100.0	1.2e-65
QBB62859.1|848926_849154_+	XRE family transcriptional regulator	NA	A0A141E1R7	Streptococcus_phage	57.3	2.9e-14
QBB62860.1|849261_849771_-	hypothetical protein	NA	NA	NA	NA	NA
QBB62861.1|849825_850071_+	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
QBB62862.1|850029_850239_-	hypothetical protein	NA	NA	NA	NA	NA
QBB62863.1|850388_850628_-	hypothetical protein	NA	NA	NA	NA	NA
QBB62864.1|850794_850980_+	XRE family transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
QBB62865.1|851058_851355_+	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	98.0	3.1e-48
QBB62866.1|851351_851489_+	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
QBB62867.1|851569_851899_+	hypothetical protein	NA	J7KBZ0	Streptococcus_phage	41.8	7.9e-13
QBB62868.1|851898_852093_+	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
QBB62869.1|852089_852374_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62870.1|852370_853054_+	DNA-binding protein	NA	J7KC09	Streptococcus_phage	99.1	9.4e-125
QBB62871.1|853089_854493_+	DEAD/DEAH box helicase	NA	A0A1P8BMH7	Lactococcus_phage	72.3	2.3e-194
QBB62872.1|854497_854980_+	DUF669 domain-containing protein	NA	A0A1P8BM40	Lactococcus_phage	70.7	9.7e-60
QBB62873.1|854997_856551_+	phage resistance protein	NA	A0A1P8BM51	Lactococcus_phage	70.6	5.7e-210
QBB62874.1|856819_857689_+	hypothetical protein	NA	A0A1P8BME8	Lactococcus_phage	65.6	5.8e-103
QBB62875.1|857642_857993_+	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	88.5	9.9e-46
QBB62876.1|857976_858333_+	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	100.0	2.9e-61
QBB62877.1|858329_858575_+	hypothetical protein	NA	A0A097PBE9	Streptococcus_pyogenes_phage	95.1	2.1e-39
QBB62878.1|858574_858811_+	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
QBB62879.1|858974_859259_+	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
QBB62880.1|859260_859893_+	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	5.1e-85
QBB62881.1|859897_860377_+	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
QBB62882.1|860825_861260_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	97.9	6.2e-74
QBB62883.1|861837_862752_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62884.1|862770_863232_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62885.1|863369_863747_-	HicB family protein	NA	I3NLB2	Bifidobacterium_phage	44.0	3.3e-15
QBB62886.1|863798_863984_-	addiction module toxin, HicA family	NA	D6PSW1	Lactobacillus_phage	54.0	1.7e-09
QBB63866.1|864046_864514_+|terminase	terminase small subunit	terminase	A0A141E1Y3	Streptococcus_phage	70.8	1.1e-52
QBB62887.1|864491_865799_+|terminase	PBSX family phage terminase large subunit	terminase	A0A2H4IYR5	uncultured_Caudovirales_phage	75.7	2.0e-184
QBB62888.1|865810_867313_+|portal	phage portal protein	portal	C9W9H5	Streptococcus_virus	54.5	1.9e-141
QBB62889.1|867293_868856_+|head	phage head morphogenesis protein	head	U6E9F1	Streptococcus_phage	44.2	2.5e-48
QBB62890.1|868859_869045_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62891.1|869114_869429_+	hypothetical protein	NA	M1PLI3	Streptococcus_phage	72.8	6.8e-38
QBB62892.1|869431_869698_+	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	70.5	1.9e-25
QBB62893.1|869841_870375_+	DUF4355 domain-containing protein	NA	A0A141E0S7	Streptococcus_phage	80.7	6.8e-14
QBB62894.1|870384_870765_+|head	head decoration protein	head	A0A0K2CNR0	Brevibacillus_phage	32.5	1.8e-05
QBB62895.1|870767_871850_+|capsid	minor capsid protein E	capsid	A0A2H4J022	uncultured_Caudovirales_phage	57.1	3.4e-105
QBB62896.1|871859_872102_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62897.1|872115_872469_+	hypothetical protein	NA	A0A2H4J002	uncultured_Caudovirales_phage	49.6	9.7e-25
QBB62898.1|872465_872774_+	hypothetical protein	NA	A0A2P1JTW8	Anoxybacillus_phage	40.2	7.4e-13
QBB62899.1|872754_873120_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	46.3	5.9e-17
QBB62900.1|873116_873506_+|capsid	phage capsid protein	capsid	B5SP36	Lactococcus_phage	68.2	4.2e-45
QBB63867.1|873560_874184_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	50.5	3.2e-39
QBB62901.1|874237_874591_+	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	48.6	5.5e-20
QBB63868.1|874665_874962_+	hypothetical protein	NA	A0A0S2MYH1	Enterococcus_phage	42.2	1.3e-09
QBB62902.1|874976_878612_+|tail	phage tail protein	tail	C5IUK3	Streptococcus_phage	41.4	1.2e-85
QBB62903.1|878643_879423_+|tail	phage tail protein	tail	A3F655	Streptococcus_phage	54.0	1.9e-65
QBB62904.1|879419_881474_+	hypothetical protein	NA	A3F656	Streptococcus_phage	84.1	0.0e+00
QBB62905.1|881470_882685_+	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB62906.1|882671_883001_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62907.1|883011_884907_+	hyaluronidase	NA	Q938J9	Temperate_phage	52.5	5.9e-76
QBB62908.1|884920_885082_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62909.1|885084_885702_+	hypothetical protein	NA	A3F662	Streptococcus_phage	94.6	9.8e-89
QBB62910.1|885712_886009_+	hypothetical protein	NA	Q938J6	Temperate_phage	98.0	3.7e-46
QBB62911.1|886005_886191_+	hypothetical protein	NA	Q938J5	Temperate_phage	96.7	6.6e-25
QBB62912.1|886302_887637_+	lysin	NA	Q5MY96	Streptococcus_phage	93.0	1.3e-247
QBB62913.1|887712_888420_-	exotoxin type C	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
QBB62914.1|888530_889289_-	DNAse	NA	NA	NA	NA	NA
QBB62915.1|889528_889717_+	Paratox	NA	A3F673	Streptococcus_phage	76.3	2.1e-18
QBB62916.1|890307_890922_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
889789:889887	attR	GGAAACTCATGAACAAGACAAAAAGAAAAAACCTTGATGTAACAAGGTTTTAGTAAGTTATGATTACTTACGGTAAGCATTGATGGAGCTGGTGGGAGT	NA	NA	NA	NA
QBB62917.1|891048_891834_-	ABC transporter permease	NA	NA	NA	NA	NA
QBB62918.1|891843_892542_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
QBB62919.1|892541_892913_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB62920.1|893097_896208_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.7	5.4e-119
QBB62921.1|896287_897301_+	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA	NA
QBB62922.1|897363_898866_+	pyruvate kinase	NA	NA	NA	NA	NA
QBB62923.1|899083_899641_+	signal peptidase I	NA	NA	NA	NA	NA
QBB62924.1|899816_901631_+	glutamine--fructose-6-phosphate aminotransferase	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.2e-97
QBB62925.1|901826_902162_+	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
QBB62926.1|902268_902910_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QBB62927.1|902919_903549_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
QBB62928.1|903564_904401_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBB62929.1|904770_905544_+	hypothetical protein	NA	NA	NA	NA	NA
QBB62930.1|905913_907149_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
QBB62931.1|907268_908591_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QBB62932.1|909119_911438_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	2.7e-131
QBB62933.1|911800_912049_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBB62934.1|912085_912697_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
QBB62935.1|912707_912896_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
QBB62936.1|912908_913448_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB62937.1|913488_913689_+	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
QBB62938.1|913696_914188_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
QBB62939.1|914350_914992_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBB62940.1|915134_915677_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBB62941.1|915794_916496_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
QBB62942.1|916510_919147_+	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBB62943.1|919238_919835_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QBB62944.1|919845_920802_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QBB62945.1|920898_922239_+	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
QBB62946.1|922354_923239_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 4
CP031617	Streptococcus pyogenes strain MGAS29409 chromosome, complete genome	1894040	1243130	1253734	1894040		Streptococcus_phage(57.14%)	9	NA	NA
QBB63243.1|1243130_1244273_-	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
QBB63244.1|1244507_1244948_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63245.1|1244977_1246246_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB63246.1|1246333_1247686_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB63247.1|1247907_1248249_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB63248.1|1248309_1249476_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB63249.1|1249569_1250256_-	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB63250.1|1250252_1251416_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB63251.1|1251523_1253734_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
>prophage 5
CP031617	Streptococcus pyogenes strain MGAS29409 chromosome, complete genome	1894040	1531905	1537779	1894040		Streptococcus_phage(100.0%)	8	NA	NA
QBB63495.1|1531905_1532733_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
QBB63496.1|1532806_1533163_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB63497.1|1533461_1534091_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB63498.1|1534137_1534530_-	hypothetical protein	NA	NA	NA	NA	NA
QBB63499.1|1534556_1535420_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB63500.1|1535424_1535748_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB63501.1|1536250_1537126_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB63502.1|1537143_1537779_-	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
>prophage 6
CP031617	Streptococcus pyogenes strain MGAS29409 chromosome, complete genome	1894040	1800489	1820714	1894040	integrase,holin	Streptococcus_phage(56.25%)	27	1803688:1803708	1818015:1818035
QBB63729.1|1800489_1801710_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB63897.1|1801720_1803703_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1803688:1803708	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB63898.1|1803797_1804943_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB63730.1|1805197_1805341_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB63731.1|1806202_1806970_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB63732.1|1807123_1807330_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB63733.1|1807363_1807564_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB63734.1|1807584_1807992_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB63735.1|1808403_1808931_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB63736.1|1809157_1809352_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB63737.1|1809551_1809743_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB63738.1|1809883_1810336_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63739.1|1810437_1810770_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63899.1|1810769_1810961_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63740.1|1810972_1811302_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63741.1|1811304_1811577_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB63742.1|1811577_1812444_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB63743.1|1812455_1813850_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB63744.1|1814143_1814398_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63745.1|1814394_1814568_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB63746.1|1814748_1815258_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB63747.1|1815331_1815820_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB63748.1|1816044_1816227_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63749.1|1816223_1816586_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB63750.1|1816560_1816944_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB63751.1|1817108_1817762_+	hypothetical protein	NA	NA	NA	NA	NA
QBB63752.1|1818158_1820714_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1818015:1818035	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 7
CP031617	Streptococcus pyogenes strain MGAS29409 chromosome, complete genome	1894040	1847124	1857112	1894040	integrase	Streptococcus_phage(75.0%)	15	1846698:1846712	1854260:1854274
1846698:1846712	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB63787.1|1847124_1847298_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB63788.1|1847584_1849198_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB63789.1|1849187_1849709_-	hypothetical protein	NA	NA	NA	NA	NA
QBB63790.1|1849718_1850087_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB63900.1|1849995_1850187_-	hypothetical protein	NA	NA	NA	NA	NA
QBB63791.1|1850186_1850519_-	hypothetical protein	NA	NA	NA	NA	NA
QBB63792.1|1850530_1850713_-	hypothetical protein	NA	NA	NA	NA	NA
QBB63793.1|1850933_1851203_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB63794.1|1851232_1851799_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB63795.1|1851814_1852003_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB63796.1|1852171_1852615_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB63797.1|1852794_1853958_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.5	2.8e-161
QBB63798.1|1854114_1854726_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1854260:1854274	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB63799.1|1855455_1855728_-	hypothetical protein	NA	NA	NA	NA	NA
QBB63800.1|1855744_1857112_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
