The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1962429	36552	48865	1962429		Synechococcus_phage(28.57%)	8	NA	NA
QBB21464.1|36552_40278_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.3	1.1e-38
QBB21465.1|40438_41893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	2.8e-54
QBB21466.1|41920_42943_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	2.4e-63
QBB21467.1|43110_43665_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.6	6.8e-25
QBB21468.1|43848_45396_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	3.4e-45
QBB21469.1|45453_46578_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
QBB23208.1|46830_48096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
QBB21470.1|48373_48865_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1962429	337940	343814	1962429		Streptococcus_phage(100.0%)	8	NA	NA
QBB21727.1|337940_338576_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
QBB21728.1|338593_339469_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	2.1e-68
QBB21729.1|339971_340295_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
QBB21730.1|340299_341163_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
QBB21731.1|341189_341582_+	hypothetical protein	NA	NA	NA	NA	NA
QBB21732.1|341628_342258_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBB21733.1|342556_342913_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.8	6.3e-40
QBB21734.1|342986_343814_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.9	1.7e-128
>prophage 3
CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1962429	622137	632741	1962429		Streptococcus_phage(57.14%)	9	NA	NA
QBB21980.1|622137_624348_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	68.8	2.5e-267
QBB21981.1|624455_625619_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	64.9	4.5e-143
QBB21982.1|625615_626302_+	3-dehydroquinase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
QBB21983.1|626395_627562_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
QBB21984.1|627622_627964_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	41.1	2.6e-19
QBB21985.1|628185_629538_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.7	1.0e-29
QBB21986.1|629625_630894_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
QBB21987.1|630923_631364_-	hypothetical protein	NA	NA	NA	NA	NA
QBB21988.1|631598_632741_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
>prophage 4
CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1962429	1249718	1312977	1962429	integrase,capsid,terminase,tRNA,transposase,portal,tail	Temperate_phage(79.69%)	87	1265156:1265174	1320969:1320987
QBB22540.1|1249718_1251452_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.2	3.9e-26
QBB22541.1|1251448_1252189_-	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	32.4	8.0e-05
QBB22542.1|1252433_1252616_-	Paratox	NA	A3F673	Streptococcus_phage	76.7	2.6e-18
QBB22543.1|1252680_1252968_-	hypothetical protein	NA	Q938I9	Temperate_phage	100.0	2.4e-29
QBB22544.1|1252961_1253537_-	phospholipase	NA	Q938J0	Temperate_phage	100.0	1.7e-111
QBB22545.1|1254012_1254792_-	pyrogenic exotoxin SpeK	NA	Q938J1	Temperate_phage	100.0	5.4e-145
QBB22546.1|1255095_1255962_-	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	100.0	3.7e-134
QBB22547.1|1255949_1256474_-	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
QBB22548.1|1256613_1257816_-	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	100.0	3.3e-242
QBB22549.1|1257926_1258112_-	hypothetical protein	NA	Q938J5	Temperate_phage	100.0	1.7e-25
QBB22550.1|1258108_1258405_-	hypothetical protein	NA	Q938J6	Temperate_phage	100.0	7.5e-47
QBB22551.1|1258415_1259027_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	100.0	2.7e-91
QBB22552.1|1259029_1259461_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
QBB22553.1|1259472_1261362_-	hyaluronidase	NA	Q938J9	Temperate_phage	77.7	3.5e-198
QBB22554.1|1261372_1261687_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22555.1|1261688_1262903_-	hypothetical protein	NA	A3F657	Streptococcus_phage	49.5	5.0e-44
QBB22556.1|1262899_1265047_-	peptidase	NA	Q938K1	Temperate_phage	95.9	0.0e+00
QBB22557.1|1265043_1265760_-|tail	phage tail protein	tail	Q938K2	Temperate_phage	100.0	2.9e-137
1265156:1265174	attL	ATATTATCCCAAGCAGATA	NA	NA	NA	NA
QBB22558.1|1265756_1269017_-	tape measure domain-containing protein	NA	Q938K3	Temperate_phage	99.5	0.0e+00
QBB22559.1|1269006_1269588_-	hypothetical protein	NA	Q938K4	Temperate_phage	99.5	4.9e-106
QBB22560.1|1269591_1270026_-	hypothetical protein	NA	Q938K5	Temperate_phage	100.0	2.6e-72
QBB22561.1|1270064_1270550_-|tail	phage tail protein	tail	Q938K6	Temperate_phage	100.0	1.6e-86
QBB22562.1|1270549_1270948_-|capsid	capsid protein	capsid	Q79S87	Temperate_phage	100.0	3.5e-71
QBB22563.1|1270944_1271301_-|capsid	capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
QBB22564.1|1271300_1271633_-|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	100.0	9.6e-59
QBB22565.1|1271622_1272039_-	hypothetical protein	NA	Q938K7	Temperate_phage	100.0	1.1e-56
QBB22566.1|1272092_1272911_-|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
QBB22567.1|1272914_1273529_-	hypothetical protein	NA	Q938K8	Temperate_phage	100.0	1.3e-96
QBB22568.1|1273654_1273921_-	hypothetical protein	NA	Q938K9	Temperate_phage	100.0	1.5e-38
QBB22569.1|1273982_1274222_-	hypothetical protein	NA	Q938L0	Temperate_phage	100.0	2.8e-36
QBB22570.1|1274193_1275672_-|capsid	capsid protein	capsid	Q938L1	Temperate_phage	100.0	8.2e-275
QBB22571.1|1275676_1277179_-|portal	phage portal protein	portal	Q938L2	Temperate_phage	100.0	5.4e-282
QBB22572.1|1277192_1278404_-|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
QBB22573.1|1278486_1278960_-	hypothetical protein	NA	Q938L4	Temperate_phage	98.7	7.3e-76
QBB22574.1|1279010_1279388_-	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	100.0	1.7e-67
QBB22575.1|1279448_1279832_-	N-acetyltransferase	NA	B5SP24	Lactococcus_phage	57.7	2.5e-34
QBB22576.1|1279840_1280518_-	hypothetical protein	NA	Q938L6	Temperate_phage	100.0	8.7e-131
QBB22577.1|1280496_1281015_-	chromosome partitioning protein ParB	NA	Q938L7	Temperate_phage	100.0	1.5e-90
QBB22578.1|1281091_1281277_+	hypothetical protein	NA	NA	NA	NA	NA
QBB22579.1|1281251_1281515_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22580.1|1281624_1281846_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22581.1|1281991_1282432_-	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	100.0	5.0e-79
QBB22582.1|1282872_1283379_-	DUF1642 domain-containing protein	NA	Q938L9	Temperate_phage	100.0	9.8e-95
QBB22583.1|1283542_1283947_-	hypothetical protein	NA	Q938M1	Temperate_phage	100.0	6.0e-71
QBB22584.1|1283956_1284226_-	hypothetical protein	NA	Q938M2	Temperate_phage	100.0	4.0e-47
QBB22585.1|1284222_1284507_-	DUF3310 domain-containing protein	NA	Q938M3	Temperate_phage	100.0	5.4e-50
QBB22586.1|1284500_1284752_-	hypothetical protein	NA	Q938M4	Temperate_phage	100.0	6.8e-41
QBB22587.1|1284748_1285105_-	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	85.6	1.6e-51
QBB22588.1|1285101_1285542_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.3	8.5e-79
QBB22589.1|1285541_1285745_-	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
QBB22590.1|1285750_1286170_-	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	100.0	1.6e-71
QBB22591.1|1286162_1286837_-	single-stranded DNA-binding protein	NA	Q938M8	Temperate_phage	100.0	2.5e-106
QBB22592.1|1286837_1287320_-	hypothetical protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
QBB22593.1|1287341_1287596_-	hypothetical protein	NA	Q938N0	Temperate_phage	100.0	7.4e-43
QBB22594.1|1287606_1287747_-	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	52.3	7.5e-05
QBB22595.1|1287743_1287977_-	hypothetical protein	NA	Q938N1	Temperate_phage	100.0	5.0e-38
QBB22596.1|1287957_1288347_-	DnaD domain protein	NA	Q938N2	Temperate_phage	99.2	1.1e-58
QBB22597.1|1288492_1288750_-	transcriptional regulator	NA	A0A1S5SFN6	Streptococcus_phage	46.4	1.2e-11
QBB22598.1|1288843_1289029_-	hypothetical protein	NA	Q938N3	Temperate_phage	100.0	1.1e-24
QBB22599.1|1289057_1289315_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22600.1|1289421_1289634_+	hypothetical protein	NA	NA	NA	NA	NA
QBB22601.1|1289560_1289815_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22602.1|1289803_1290004_+	KTSC domain-containing protein	NA	A0A1S5S8T9	Streptococcus_phage	72.3	6.3e-21
QBB22603.1|1290182_1290911_-	oxidoreductase	NA	Q938N5	Temperate_phage	100.0	6.9e-134
QBB22604.1|1290921_1291113_-	hypothetical protein	NA	A7J270	Streptococcus_phage	90.5	1.2e-24
QBB22605.1|1291908_1292268_+	XRE family transcriptional regulator	NA	Q938N6	Temperate_phage	100.0	1.1e-60
QBB22606.1|1292281_1292662_+	ImmA/IrrE family metallo-endopeptidase	NA	Q938N7	Temperate_phage	100.0	5.3e-69
QBB22607.1|1292672_1293194_+	hypothetical protein	NA	Q938N8	Temperate_phage	100.0	2.3e-67
QBB22608.1|1293312_1294467_+|integrase	site-specific integrase	integrase	Q938N9	Temperate_phage	100.0	2.8e-206
QBB22609.1|1294577_1295684_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA	NA
QBB22610.1|1295726_1296350_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
QBB22611.1|1296362_1297073_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA	NA
QBB22612.1|1297543_1297837_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBB22613.1|1297847_1298873_-	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBB22614.1|1298869_1299544_-	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
QBB22615.1|1299545_1300394_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
QBB22616.1|1300398_1302294_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
QBB22617.1|1302293_1303022_-	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
QBB22618.1|1303154_1305563_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
QBB22619.1|1305716_1308365_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.3e-150
QBB22620.1|1308366_1308930_-	shikimate kinase	NA	NA	NA	NA	NA
QBB22621.1|1308926_1309127_-	N-acetyltransferase	NA	NA	NA	NA	NA
QBB22622.1|1309275_1309509_+	hypothetical protein	NA	NA	NA	NA	NA
QBB22623.1|1309531_1309927_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
QBB22624.1|1309947_1310202_-	DUF1912 family protein	NA	NA	NA	NA	NA
QBB22625.1|1310370_1311504_-|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
QBB22626.1|1311840_1312977_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	31.0	2.3e-43
1320969:1320987	attR	ATATTATCCCAAGCAGATA	NA	NA	NA	NA
>prophage 5
CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1962429	1450332	1523547	1962429	integrase,capsid,portal,terminase,head,tRNA,tail	Streptococcus_phage(70.37%)	83	1479261:1479277	1520143:1520159
QBB22732.1|1450332_1452372_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
QBB22733.1|1452749_1453667_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
QBB22734.1|1453630_1453837_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22735.1|1454038_1454593_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22736.1|1454703_1455543_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.7	4.9e-51
QBB22737.1|1455664_1456813_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
QBB22738.1|1456929_1458561_-	Na/Pi cotransporter family protein	NA	A0A1B1ITU5	uncultured_Mediterranean_phage	38.8	2.7e-05
QBB22739.1|1458762_1459485_+	hypothetical protein	NA	NA	NA	NA	NA
QBB22740.1|1459613_1460456_-	DegV domain-containing protein	NA	A0A1X9I5J4	Streptococcus_phage	61.9	1.3e-91
QBB22741.1|1460748_1461306_+	TetR/AcrR family transcriptional regulator	NA	A0A1X9I6A2	Streptococcus_phage	60.3	3.2e-14
QBB22742.1|1461341_1462166_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
QBB23265.1|1462167_1462773_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
QBB22743.1|1462981_1463959_-	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA	NA
QBB22744.1|1464468_1464984_-	galactose-6-phosphate isomerase	NA	NA	NA	NA	NA
QBB22745.1|1464998_1465424_-	galactose-6-phosphate isomerase	NA	A0A222YX14	Synechococcus_phage	28.6	2.2e-07
QBB23266.1|1465680_1467129_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
QBB22746.1|1467157_1467463_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
QBB22747.1|1467455_1467929_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QBB22748.1|1468165_1468936_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	27.8	6.4e-21
QBB22749.1|1468962_1469133_-	copper-binding protein	NA	NA	NA	NA	NA
QBB22750.1|1469139_1469343_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
QBB23267.1|1469356_1471558_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.3	3.5e-112
QBB22751.1|1471587_1472025_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
QBB22752.1|1472187_1473189_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBB22753.1|1473241_1473598_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
QBB22754.1|1473797_1476659_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.2	4.5e-19
QBB22755.1|1476678_1476981_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
QBB22756.1|1476973_1477270_-	YlxR family protein	NA	NA	NA	NA	NA
QBB22757.1|1477285_1478443_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
QBB23268.1|1478617_1479094_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
1479261:1479277	attL	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
QBB22758.1|1479398_1479578_-	Paratox	NA	A3F673	Streptococcus_phage	83.1	5.6e-21
QBB22759.1|1479816_1480989_+	streptodornase	NA	A7J2B8	Streptococcus_phage	49.8	4.7e-76
QBB22760.1|1481104_1482301_-	CHAP domain-containing protein	NA	Q938J4	Temperate_phage	82.8	5.5e-197
QBB22761.1|1482411_1482597_-	hypothetical protein	NA	Q938J5	Temperate_phage	100.0	1.7e-25
QBB22762.1|1482593_1482890_-	hypothetical protein	NA	Q938J6	Temperate_phage	100.0	7.5e-47
QBB22763.1|1482900_1483512_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	100.0	2.7e-91
QBB22764.1|1483514_1483946_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	100.0	1.1e-73
QBB22765.1|1483957_1485847_-	hyaluronidase	NA	Q938J9	Temperate_phage	77.7	3.5e-198
QBB22766.1|1485857_1486172_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22767.1|1486173_1487388_-	hypothetical protein	NA	A3F657	Streptococcus_phage	37.2	1.1e-48
QBB22768.1|1487384_1489367_-	peptidase	NA	A7J2A7	Streptococcus_phage	92.5	0.0e+00
QBB22769.1|1489376_1490219_-|tail	phage tail protein	tail	A7J2A6	Streptococcus_phage	99.6	8.5e-160
QBB22770.1|1490230_1494613_-|tail	phage tail protein	tail	A7J2A5	Streptococcus_phage	76.4	3.2e-226
QBB22771.1|1494627_1494861_-	hypothetical protein	NA	A7J2A4	Streptococcus_phage	100.0	4.4e-34
QBB22772.1|1494935_1495391_-	hypothetical protein	NA	A7J2A3	Streptococcus_phage	100.0	8.3e-77
QBB22773.1|1495444_1496044_-|tail	phage major tail protein, TP901-1 family	tail	A7J2A2	Streptococcus_phage	98.9	4.1e-92
QBB22774.1|1496055_1496415_-	hypothetical protein	NA	A7J2A1	Streptococcus_phage	97.5	6.8e-58
QBB22775.1|1496418_1496763_-	HK97 gp10 family phage protein	NA	A7J2A0	Streptococcus_phage	99.1	6.1e-56
QBB22776.1|1496759_1497038_-	hypothetical protein	NA	A7J299	Streptococcus_phage	98.9	4.2e-47
QBB22777.1|1497048_1497405_-	hypothetical protein	NA	A7J298	Streptococcus_phage	97.5	2.8e-56
QBB22778.1|1497416_1498304_-|capsid	phage capsid protein	capsid	A7J297	Streptococcus_phage	99.7	3.6e-161
QBB22779.1|1498316_1498886_-	DUF4355 domain-containing protein	NA	A7J296	Streptococcus_phage	97.9	2.6e-80
QBB22780.1|1499041_1499308_-	hypothetical protein	NA	A0A097PAR8	Streptococcus_pyogenes_phage	88.6	1.7e-34
QBB22781.1|1499310_1499499_-	hypothetical protein	NA	A7J294	Streptococcus_phage	98.4	1.4e-22
QBB22782.1|1499529_1500975_-|head	phage head morphogenesis protein	head	A7J293	Streptococcus_phage	92.9	3.4e-257
QBB22783.1|1500934_1502467_-|portal	phage portal protein	portal	A7J292	Streptococcus_phage	98.2	1.3e-286
QBB22784.1|1502482_1503760_-|terminase	PBSX family phage terminase large subunit	terminase	A7J291	Streptococcus_phage	97.6	1.3e-241
QBB22785.1|1503749_1504202_-|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	100.0	6.9e-76
QBB22786.1|1504291_1504708_-	DUF722 domain-containing protein	NA	A7J289	Streptococcus_phage	100.0	6.6e-73
QBB22787.1|1504704_1504896_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22788.1|1504885_1505737_-	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	71.9	1.5e-100
QBB22789.1|1505745_1506012_-	hypothetical protein	NA	A7J287	Streptococcus_phage	65.2	5.4e-20
QBB22790.1|1506176_1507499_-	DEAD/DEAH box helicase	NA	A7J284	Streptococcus_phage	98.4	1.9e-254
QBB22791.1|1508156_1510541_-	DNA primase	NA	A7J282	Streptococcus_phage	94.4	5.3e-276
QBB22792.1|1510545_1512468_-	DNA polymerase	NA	A7J280	Streptococcus_phage	96.7	0.0e+00
QBB22793.1|1512510_1513068_-	DUF2815 family protein	NA	D2J040	Enterococcus_phage	57.9	2.5e-51
QBB22794.1|1513078_1513477_-	hypothetical protein	NA	NA	NA	NA	NA
QBB22795.1|1513480_1514635_-	DUF2800 domain-containing protein	NA	A7J278	Streptococcus_phage	91.9	4.5e-204
QBB22796.1|1514634_1514934_-	hypothetical protein	NA	A7J277	Streptococcus_phage	100.0	1.8e-43
QBB22797.1|1515021_1515225_-	hypothetical protein	NA	A7J276	Streptococcus_phage	95.5	2.3e-31
QBB22798.1|1515370_1515757_-	hypothetical protein	NA	A7J274	Streptococcus_phage	88.2	3.1e-56
QBB22799.1|1515949_1516120_-	hypothetical protein	NA	A7J273	Streptococcus_phage	89.3	6.9e-21
QBB22800.1|1516116_1516392_-	DNA-binding protein	NA	A7J272	Streptococcus_phage	95.6	5.9e-46
QBB22801.1|1516453_1516669_-	transcriptional regulator	NA	M1Q1B4	Streptococcus_phage	76.8	4.2e-23
QBB22802.1|1516716_1517130_+	hypothetical protein	NA	NA	NA	NA	NA
QBB22803.1|1517540_1517942_+	XRE family transcriptional regulator	NA	A7J269	Streptococcus_phage	72.9	1.1e-40
QBB22804.1|1517955_1518339_+	ImmA/IrrE family metallo-endopeptidase	NA	A7J268	Streptococcus_phage	99.2	5.3e-69
QBB22805.1|1518349_1518901_+	hypothetical protein	NA	A7J267	Streptococcus_phage	92.3	3.4e-85
QBB22806.1|1519017_1520097_+|integrase	site-specific integrase	integrase	A7J266	Streptococcus_phage	86.9	1.3e-176
QBB22807.1|1520294_1520930_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
1520143:1520159	attR	AAGGAGAGGAGGGGATT	NA	NA	NA	NA
QBB22808.1|1520929_1521721_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
QBB22809.1|1521784_1522819_-	multidrug ABC transporter permease	NA	NA	NA	NA	NA
QBB22810.1|1522821_1523547_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	3.9e-20
>prophage 6
CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1962429	1868883	1889108	1962429	integrase,holin	Streptococcus_phage(56.25%)	27	1872082:1872102	1886409:1886429
QBB23107.1|1868883_1870104_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.8	1.6e-05
QBB23279.1|1870114_1872097_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	1.3e-62
1872082:1872102	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
QBB23280.1|1872191_1873337_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
QBB23108.1|1873591_1873735_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QBB23109.1|1874596_1875364_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
QBB23110.1|1875517_1875724_+	XRE family transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
QBB23111.1|1875757_1875958_+	XRE family transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
QBB23112.1|1875978_1876386_+	hypothetical protein	NA	A0A1X9I5V7	Streptococcus_phage	69.4	1.3e-49
QBB23113.1|1876797_1877325_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
QBB23114.1|1877551_1877746_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB23115.1|1877945_1878137_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
QBB23116.1|1878277_1878730_+	hypothetical protein	NA	NA	NA	NA	NA
QBB23117.1|1878831_1879164_+	hypothetical protein	NA	NA	NA	NA	NA
QBB23281.1|1879163_1879355_+	hypothetical protein	NA	NA	NA	NA	NA
QBB23118.1|1879366_1879696_+	hypothetical protein	NA	NA	NA	NA	NA
QBB23119.1|1879698_1879971_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
QBB23120.1|1879971_1880838_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	73.8	6.1e-121
QBB23121.1|1880849_1882244_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.3e-48
QBB23122.1|1882537_1882792_+	hypothetical protein	NA	NA	NA	NA	NA
QBB23123.1|1882788_1882962_+	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	8.6e-11
QBB23124.1|1883142_1883652_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.9e-29
QBB23125.1|1883725_1884214_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.9	1.4e-45
QBB23126.1|1884438_1884621_+	hypothetical protein	NA	NA	NA	NA	NA
QBB23127.1|1884617_1884980_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
QBB23128.1|1884954_1885338_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	41.7	3.7e-14
QBB23129.1|1885502_1886156_+	hypothetical protein	NA	NA	NA	NA	NA
QBB23130.1|1886552_1889108_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.8	6.8e-43
1886409:1886429	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
>prophage 7
CP031640	Streptococcus pyogenes strain MGAS7888 chromosome, complete genome	1962429	1915518	1925506	1962429	integrase	Streptococcus_phage(75.0%)	15	1915092:1915106	1922654:1922668
1915092:1915106	attL	AATCCTTGAAGCTGT	NA	NA	NA	NA
QBB23165.1|1915518_1915692_-	DUF2758 domain-containing protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
QBB23166.1|1915978_1917592_-	phage resistance protein	NA	A0A1P8BMF9	Lactococcus_phage	53.1	2.4e-147
QBB23167.1|1917581_1918103_-	hypothetical protein	NA	NA	NA	NA	NA
QBB23168.1|1918112_1918481_-	hypothetical protein	NA	A0A1X9I6M4	Streptococcus_phage	47.1	2.6e-12
QBB23282.1|1918389_1918581_-	hypothetical protein	NA	NA	NA	NA	NA
QBB23169.1|1918580_1918913_-	hypothetical protein	NA	NA	NA	NA	NA
QBB23170.1|1918924_1919107_-	hypothetical protein	NA	NA	NA	NA	NA
QBB23171.1|1919327_1919597_-	phage antirepressor protein	NA	NA	NA	NA	NA
QBB23172.1|1919626_1920193_-	phage repressor protein	NA	A0A0A7S0G2	Clostridium_phage	42.9	5.0e-23
QBB23173.1|1920208_1920397_-	XRE family transcriptional regulator	NA	A0A1X9I5U7	Streptococcus_phage	59.7	1.7e-12
QBB23174.1|1920565_1921009_+	XRE family transcriptional regulator	NA	A0A1X9I723	Streptococcus_phage	48.6	1.8e-07
QBB23175.1|1921188_1922352_+|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	70.3	6.2e-161
QBB23176.1|1922508_1923120_-	30S ribosomal protein S4	NA	NA	NA	NA	NA
1922654:1922668	attR	ACAGCTTCAAGGATT	NA	NA	NA	NA
QBB23177.1|1923849_1924122_-	hypothetical protein	NA	NA	NA	NA	NA
QBB23178.1|1924138_1925506_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	63.7	1.0e-154
