assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004153965.1_ASM415396v1	CP031637	Streptococcus pyogenes strain MGAS10786 chromosome, complete genome	1	605517-605679	1	PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Type I-U,Type I-C, Type I-U?	TAGTCTCACCCTTCATGGGTGAGTGGATTGAAA	33	0	0	NA	NA	I-C	2	2	TypeI-U,TypeI-C,TypeI-U?	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|188aa|up_8|CP031637.1_593982_594546_+,NA	NA|60aa|up_9|CP031637.1_593806_593986_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|188aa|up_8|CP031637.1_593982_594546_+	NA	NA|883aa|up_7|CP031637.1_594547_597196_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	cas3|803aa|up_6|CP031637.1_597349_599758_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|243aa|up_5|CP031637.1_599890_600619_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|632aa|up_4|CP031637.1_600618_602514_+	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas7|283aa|up_3|CP031637.1_602518_603367_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas4|225aa|up_2|CP031637.1_603368_604043_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|342aa|up_1|CP031637.1_604039_605065_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|CP031637.1_605075_605369_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|237aa|down_0|CP031637.1_605839_606550_+	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_1|CP031637.1_606562_607186_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|369aa|down_2|CP031637.1_607228_608335_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|247aa|down_3|CP031637.1_608422_609163_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|578aa|down_4|CP031637.1_609159_610893_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|360aa|down_5|CP031637.1_610965_612045_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|239aa|down_6|CP031637.1_612058_612775_+	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|158aa|down_7|CP031637.1_612940_613414_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|227aa|down_8|CP031637.1_613555_614236_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|412aa|down_9|CP031637.1_614509_615745_+	PRK01388, PRK01388, arginine deiminase; Provisional
GCA_004153965.1_ASM415396v1	CP031637	Streptococcus pyogenes strain MGAS10786 chromosome, complete genome	2	1099327-1099561	1,1	CRT,CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC,GACCATTCAAAACAGCATAGCTCTAAAACG	36,30	0	0	NA	NA	II-A:II-A	3,3	3	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|35aa|up_1|CP031637.1_1097935_1098040_-,NA|61aa|down_0|CP031637.1_1099634_1099817_-,NA|84aa|down_2|CP031637.1_1100665_1100917_+,NA|80aa|down_3|CP031637.1_1101180_1101420_+,NA|119aa|down_4|CP031637.1_1101477_1101834_+,NA|100aa|down_7|CP031637.1_1103450_1103750_-	NA|276aa|up_9|CP031637.1_1089927_1090755_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_8|CP031637.1_1090751_1091561_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_7|CP031637.1_1091577_1092069_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_6|CP031637.1_1092087_1092513_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_5|CP031637.1_1092719_1093739_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_4|CP031637.1_1093868_1094306_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|420aa|up_3|CP031637.1_1094491_1095751_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_2|CP031637.1_1096043_1097876_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|35aa|up_1|CP031637.1_1097935_1098040_-	NA	NA|378aa|up_0|CP031637.1_1098044_1099178_-	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|61aa|down_0|CP031637.1_1099634_1099817_-	NA	NA|70aa|down_1|CP031637.1_1100015_1100225_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|down_2|CP031637.1_1100665_1100917_+	NA	NA|80aa|down_3|CP031637.1_1101180_1101420_+	NA	NA|119aa|down_4|CP031637.1_1101477_1101834_+	NA	NA|402aa|down_5|CP031637.1_1101950_1103156_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|62aa|down_6|CP031637.1_1103268_1103454_-	pfam16945, Phage_r1t_holin, Putative lactococcus lactis phage r1t holin	NA|100aa|down_7|CP031637.1_1103450_1103750_-	NA	NA|206aa|down_8|CP031637.1_1103760_1104378_-	pfam07104, DUF1366, Protein of unknown function (DUF1366)	NA|143aa|down_9|CP031637.1_1104380_1104809_-	pfam07761, DUF1617, Protein of unknown function (DUF1617)
GCA_004153965.1_ASM415396v1	CP031637	Streptococcus pyogenes strain MGAS10786 chromosome, complete genome	3	1895034-1895130	2	CRISPRCasFinder	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,csn2,cas9,csm6,DinG,csa3	NA|58aa|up_9|CP031637.1_1890139_1890313_-,NA|538aa|up_8|CP031637.1_1890599_1892213_-,NA|174aa|up_7|CP031637.1_1892202_1892724_-,NA|123aa|up_6|CP031637.1_1892733_1893102_-,NA|64aa|up_5|CP031637.1_1893010_1893202_-,NA|111aa|up_4|CP031637.1_1893201_1893534_-,NA|61aa|up_3|CP031637.1_1893545_1893728_-,NA|90aa|up_2|CP031637.1_1893948_1894218_-,NA	NA|58aa|up_9|CP031637.1_1890139_1890313_-	NA	NA|538aa|up_8|CP031637.1_1890599_1892213_-	NA	NA|174aa|up_7|CP031637.1_1892202_1892724_-	NA	NA|123aa|up_6|CP031637.1_1892733_1893102_-	NA	NA|64aa|up_5|CP031637.1_1893010_1893202_-	NA	NA|111aa|up_4|CP031637.1_1893201_1893534_-	NA	NA|61aa|up_3|CP031637.1_1893545_1893728_-	NA	NA|90aa|up_2|CP031637.1_1893948_1894218_-	NA	NA|189aa|up_1|CP031637.1_1894247_1894814_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|CP031637.1_1894829_1895018_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|CP031637.1_1895186_1895630_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|CP031637.1_1895809_1896973_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|CP031637.1_1897129_1897741_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|CP031637.1_1898470_1898743_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|CP031637.1_1898759_1900127_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|CP031637.1_1900156_1900609_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|CP031637.1_1900605_1902582_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|CP031637.1_1902671_1904570_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|CP031637.1_1904693_1905011_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|CP031637.1_1905786_1906908_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
