The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	12786	69633	2850509	tRNA,protease,transposase	Bacillus_phage(25.0%)	53	NA	NA
QAZ52435.1|12786_14073_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
QAZ52436.1|14724_15420_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
QAZ52437.1|15416_15746_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
QAZ52438.1|16107_17076_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
QAZ52439.1|17368_18307_+	DUF2232 domain-containing protein	NA	NA	NA	NA	NA
QAZ52440.1|18321_20289_+	DHH family phosphoesterase	NA	NA	NA	NA	NA
QAZ52441.1|20285_20732_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
QAZ52442.1|20763_22164_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
QAZ52443.1|22213_22441_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ52444.1|22441_23725_+	adenylosuccinate synthetase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
QAZ52445.1|24920_25622_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
QAZ52446.1|25634_27461_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
QAZ52447.1|27453_28788_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52448.1|28788_29577_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52449.1|29972_30773_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
QAZ52450.1|30999_33318_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
QAZ52451.1|33492_33687_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ52452.1|33685_34165_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
QAZ55095.1|35289_35520_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
QAZ52453.1|35527_35734_+	transcriptional regulator	NA	NA	NA	NA	NA
QAZ52454.1|36082_37186_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
QAZ52455.1|37205_37934_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAZ52456.1|38133_39228_+|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	33.9	6.9e-37
QAZ52457.1|40515_40956_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52458.1|41057_41279_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52459.1|41262_41646_+	hypothetical protein	NA	A0A0P0I4A4	Acinetobacter_phage	34.7	5.2e-16
QAZ52460.1|41664_41766_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52461.1|41809_42211_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ52462.1|44806_45901_-|transposase	IS30 family transposase	transposase	H7BWC8	unidentified_phage	33.9	6.9e-37
QAZ52463.1|46100_46829_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAZ52464.1|46848_47952_-	DUF418 domain-containing protein	NA	NA	NA	NA	NA
QAZ52465.1|48300_48507_-	transcriptional regulator	NA	NA	NA	NA	NA
QAZ55096.1|48514_48745_-	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
QAZ52466.1|50364_50622_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ52467.1|50689_52480_-	DUF927 domain-containing protein	NA	NA	NA	NA	NA
QAZ52468.1|52605_54033_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ52469.1|54149_54914_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52470.1|54903_56019_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	24.3	3.9e-11
QAZ52471.1|56180_57404_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52472.1|57944_58244_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QAZ55097.1|59092_59446_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52473.1|59517_60978_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52474.1|61179_62256_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52475.1|62272_62647_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52476.1|62639_64253_+	DNA primase	NA	NA	NA	NA	NA
QAZ52477.1|64479_66165_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	29.7	1.0e-42
QAZ52478.1|66253_66592_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52479.1|66593_66683_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52480.1|66684_66996_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52481.1|67011_67515_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
QAZ52482.1|67528_67750_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52483.1|67934_68678_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ52484.1|68958_69633_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	4.4e-127
>prophage 2
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	712487	755553	2850509	capsid,integrase,terminase,transposase,protease	Staphylococcus_phage(65.0%)	46	712697:712715	756212:756230
QAZ53099.1|712487_713231_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
712697:712715	attL	CTAATGCAAATATTAATGA	NA	NA	NA	NA
QAZ53100.1|713405_713690_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
QAZ53101.1|713765_715382_+	molecular chaperone GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
QAZ53102.1|715450_716623_-|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.9	1.0e-219
QAZ53103.1|716636_717311_-	XRE family transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
QAZ53104.1|717483_717702_+	transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	9.8e-20
QAZ53105.1|717706_718024_+	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
QAZ53106.1|718020_718176_+	pathogenicity island protein	NA	NA	NA	NA	NA
QAZ53107.1|718160_718364_+	pathogenicity island protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	1.3e-29
QAZ53108.1|718365_718776_+	pathogenicity island protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	87.3	2.2e-60
QAZ53109.1|718776_719070_+	pathogenicity island protein	NA	A0A1W6JQH0	Staphylococcus_phage	98.9	6.5e-43
QAZ53110.1|719157_720027_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	94.5	1.3e-158
QAZ53111.1|720043_721513_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	99.8	3.1e-290
QAZ53112.1|721798_722143_+	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	97.3	1.4e-60
QAZ53113.1|722367_722574_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53114.1|722560_723619_+|capsid	phage capsid protein	capsid	NA	NA	NA	NA
QAZ53115.1|723784_724276_+	pathogenicity island protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
QAZ55125.1|724272_724428_+|terminase	terminase	terminase	Q4ZE85	Staphylococcus_phage	96.0	2.2e-21
QAZ53116.1|724643_725756_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53117.1|725739_726327_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53118.1|727587_728523_-	permease	NA	NA	NA	NA	NA
QAZ53119.1|729636_730944_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
QAZ53120.1|731104_732016_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAZ53121.1|732077_732869_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QAZ53122.1|733293_734517_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
QAZ53123.1|734951_736007_+	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
QAZ53124.1|736028_737084_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.6	9.0e-26
QAZ53125.1|737282_738275_-	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.6	2.4e-161
QAZ53126.1|738663_740412_+	MAP domain-containing protein	NA	NA	NA	NA	NA
QAZ53127.1|740422_740713_+	MAP domain-containing protein	NA	NA	NA	NA	NA
QAZ53128.1|741036_742323_-	aspartate aminotransferase	NA	NA	NA	NA	NA
QAZ53129.1|742522_742621_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53130.1|742863_743040_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53131.1|743298_743679_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ53132.1|743675_744572_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
QAZ53133.1|744572_745253_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
QAZ53134.1|745249_746122_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
QAZ53135.1|746121_746862_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
QAZ53136.1|746927_747491_-	thioredoxin family protein	NA	NA	NA	NA	NA
QAZ53137.1|747611_748136_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53138.1|748195_748753_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
QAZ53139.1|748749_749592_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53140.1|749648_750689_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
QAZ53141.1|751139_751313_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53142.1|752335_753487_+|transposase	transposase	transposase	P97010	Streptococcus_pyogenes_phage	31.6	1.8e-11
QAZ55126.1|753525_755553_+|transposase	transposase	transposase	NA	NA	NA	NA
756212:756230	attR	CTAATGCAAATATTAATGA	NA	NA	NA	NA
>prophage 3
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	811891	888450	2850509	tRNA,head,tail,capsid,integrase,terminase,holin,protease,portal	Staphylococcus_phage(90.0%)	93	804347:804363	854927:854943
804347:804363	attL	TTTATTTTTAAATCTCA	NA	NA	NA	NA
QAZ53198.1|811891_812938_-|integrase	site-specific integrase	integrase	Q38045	Staphylococcus_phage	97.7	2.8e-197
QAZ53199.1|812999_813503_-	hypothetical protein	NA	W5R8I5	Staphylococcus_phage	96.4	3.9e-43
QAZ53200.1|813521_813983_-	toxin	NA	A0A2K9VBR7	Staphylococcus_phage	99.3	6.0e-83
QAZ53201.1|813995_814310_-	XRE family transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
QAZ53202.1|814461_814698_+	XRE family transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
QAZ53203.1|814711_815488_+	transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
QAZ53204.1|815516_815660_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
QAZ53205.1|815669_816323_-	hypothetical protein	NA	Q4ZBF5	Staphylococcus_virus	99.1	2.9e-115
QAZ53206.1|816394_816616_+	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	100.0	1.5e-31
QAZ53207.1|816608_816770_+	DUF1270 family protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
QAZ53208.1|816862_817165_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
QAZ53209.1|817169_817430_+	DUF1108 family protein	NA	A1KX65	Staphylococcus_virus	98.8	2.6e-43
QAZ53210.1|817439_817661_+	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
QAZ53211.1|817653_818277_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
QAZ53212.1|818276_818705_+	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	97.9	9.5e-59
QAZ53213.1|818718_819414_+	hypothetical protein	NA	A0A2H4JAQ0	uncultured_Caudovirales_phage	98.3	4.0e-131
QAZ53214.1|819385_820207_+	replication protein	NA	A0A0H3U476	Staphylococcus_phage	97.8	5.6e-124
QAZ53215.1|820219_821005_+	DNA replication protein DnaC	NA	A0A2I6PDV5	Staphylococcus_phage	99.6	1.6e-144
QAZ53216.1|821001_821160_+	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	98.1	4.5e-22
QAZ53217.1|821172_821394_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	98.6	4.9e-35
QAZ53218.1|821404_821809_+	DUF1064 domain-containing protein	NA	A0A059T5A5	Staphylococcus_phage	97.0	7.1e-72
QAZ53219.1|821813_821999_+	hypothetical protein	NA	A0A059T620	Staphylococcus_phage	95.1	4.6e-26
QAZ53220.1|821999_822617_+	hypothetical protein	NA	A0A0H3U4U9	Staphylococcus_phage	100.0	4.2e-84
QAZ53221.1|822616_822871_+	DUF3310 domain-containing protein	NA	A7TWG9	Staphylococcus_phage	100.0	2.2e-42
QAZ53222.1|822870_823119_+	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.2e-40
QAZ53223.1|823132_823339_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
QAZ53224.1|823341_823746_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	99.3	4.6e-71
QAZ53225.1|823742_823937_+	hypothetical protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
QAZ53226.1|823933_824386_+	hypothetical protein	NA	A0A0E3XBJ3	Staphylococcus_phage	100.0	1.4e-81
QAZ53227.1|824382_824784_+	acetyltransferase	NA	A0A0E3T9I2	Staphylococcus_phage	100.0	1.3e-54
QAZ53228.1|824780_825128_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
QAZ53229.1|825124_825433_+	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	99.0	2.4e-51
QAZ53230.1|825425_825677_+	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	97.6	7.1e-38
QAZ53231.1|826016_826523_+	dUTPase	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
QAZ53232.1|826559_826766_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	98.5	2.2e-29
QAZ53233.1|826762_827149_+	hypothetical protein	NA	A0A0N9BB01	Staphylococcus_phage	98.4	3.0e-64
QAZ53234.1|827145_827298_+	transcriptional regulator	NA	A7TWI2	Staphylococcus_phage	98.0	4.4e-19
QAZ53235.1|827365_827566_+	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	98.5	1.1e-25
QAZ53236.1|827617_830065_+	hypothetical protein	NA	A0A2I6PDP5	Staphylococcus_phage	98.4	0.0e+00
QAZ53237.1|830166_830271_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	94.1	1.8e-11
QAZ55129.1|830404_830695_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
QAZ53238.1|830675_832043_+	ATP-dependent helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.6	2.5e-262
QAZ53239.1|832055_832493_+	transcriptional regulator	NA	A0A2I6PEB8	Staphylococcus_phage	99.3	1.8e-76
QAZ53240.1|832649_832964_+	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
QAZ53241.1|833091_833397_+|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
QAZ53242.1|833386_835078_+|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.6	0.0e+00
QAZ53243.1|835082_836321_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
QAZ53244.1|836304_837078_+|protease	Clp protease ClpP	protease	A0A2I6PE26	Staphylococcus_phage	97.3	4.3e-134
QAZ53245.1|837089_838253_+|capsid	phage major capsid protein	capsid	A0A0K1LKB5	Staphylococcus_phage	99.5	6.8e-216
QAZ53246.1|838321_838600_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
QAZ53247.1|838611_838944_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
QAZ53248.1|838940_839342_+	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	99.2	4.0e-67
QAZ53249.1|839342_839738_+	DUF3168 domain-containing protein	NA	R4WAV1	Staphylococcus_phage	99.2	4.4e-66
QAZ53250.1|839772_840414_+|tail	phage tail protein	tail	A0A2I6PE59	Staphylococcus_phage	99.1	5.0e-120
QAZ53251.1|840505_840961_+|tail	phage tail protein	tail	A0A2I6PF45	Staphylococcus_phage	99.3	1.1e-76
QAZ53252.1|841018_841369_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
QAZ53253.1|841410_841569_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
QAZ53254.1|841582_847783_+|tail	phage tail tape measure protein	tail	M1TB03	Staphylococcus_phage	98.8	0.0e+00
QAZ53255.1|847782_848607_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	98.9	7.8e-158
QAZ53256.1|848615_850199_+	peptidase	NA	Q8SDP1	Staphylococcus_virus	99.8	1.0e-307
QAZ53257.1|850198_850489_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
QAZ53258.1|850504_852415_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
QAZ53259.1|852414_853881_+	DUF2479 domain-containing protein	NA	A0A2I6PEI6	Staphylococcus_phage	93.2	4.2e-255
QAZ53260.1|853880_854270_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
QAZ53261.1|854262_854427_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
QAZ53262.1|854472_854772_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
QAZ53263.1|854907_855345_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	99.3	1.2e-72
854927:854943	attR	TGAGATTTAAAAATAAA	NA	NA	NA	NA
QAZ53264.1|855325_856771_+	CHAP domain-containing protein	NA	A0A0H4ITZ3	Staphylococcus_phage	96.3	5.5e-284
QAZ53265.1|856860_857361_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ55130.1|858090_858171_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53266.1|858517_858679_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53267.1|858809_859325_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
QAZ53268.1|859665_860475_+	monofunctional glycosyltransferase	NA	NA	NA	NA	NA
QAZ53269.1|860735_861554_+	regulatory protein RecX	NA	NA	NA	NA	NA
QAZ53270.1|861531_861846_+	DUF1811 family protein	NA	NA	NA	NA	NA
QAZ53271.1|861860_863378_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
QAZ53272.1|863386_864223_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53273.1|864149_864380_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53274.1|864483_865461_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
QAZ53275.1|865612_866650_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
QAZ53276.1|866951_867494_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
QAZ53277.1|867785_869522_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
QAZ53278.1|869530_869623_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ55131.1|869712_870807_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
QAZ53279.1|871099_872389_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
QAZ53280.1|872469_872925_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
QAZ53281.1|872930_873881_+	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
QAZ53282.1|873977_874424_+	transcriptional repressor	NA	NA	NA	NA	NA
QAZ53283.1|883205_884267_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
QAZ53284.1|884524_885982_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
QAZ53285.1|885968_886697_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
QAZ53286.1|886832_887975_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
QAZ53287.1|887979_888450_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 4
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	938690	973194	2850509	protease	Staphylococcus_phage(90.62%)	41	NA	NA
QAZ53336.1|938690_939443_-	hypothetical protein	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.2	4.4e-51
QAZ53337.1|939469_940240_-	exotoxin	NA	A0EX09	Staphylococcus_phage	33.5	4.3e-25
QAZ53338.1|940239_940866_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	3.9e-93
QAZ53339.1|940939_941935_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	4.2e-73
QAZ53340.1|942015_942666_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	3.0e-56
QAZ55133.1|942969_943425_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
QAZ53341.1|943583_945062_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
QAZ53342.1|945066_946068_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.2	9.7e-187
QAZ53343.1|946064_946322_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	98.8	3.6e-45
QAZ53344.1|946387_946861_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	96.8	3.0e-82
QAZ55134.1|946865_947612_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	2.9e-143
QAZ53345.1|947989_949582_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
QAZ53346.1|949953_951147_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
QAZ53347.1|951271_952180_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
QAZ53348.1|952391_953225_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
QAZ53349.1|953236_953416_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53350.1|953607_953961_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
QAZ53351.1|953957_954323_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
QAZ53352.1|954578_954881_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53353.1|955140_955854_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
QAZ53354.1|956293_956929_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
QAZ53355.1|957224_957668_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	3.5e-56
QAZ53356.1|957654_958098_-	competence protein ComK	NA	NA	NA	NA	NA
QAZ53357.1|958210_958681_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
QAZ53358.1|958879_959104_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53359.1|959379_960234_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
QAZ53360.1|960528_960924_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
QAZ53361.1|960941_962234_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
QAZ53362.1|962233_962548_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
QAZ53363.1|963070_964573_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
QAZ55135.1|965065_966097_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
QAZ53364.1|966103_966736_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
QAZ53365.1|966746_967928_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
QAZ53366.1|967940_968405_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
QAZ53367.1|968526_969528_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	100.0	3.1e-185
QAZ55136.1|969436_969628_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53368.1|969639_969759_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53369.1|969761_970589_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAZ53370.1|971159_971561_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ53371.1|971680_972244_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
QAZ53372.1|972240_973194_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
>prophage 5
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	1103299	1162216	2850509	tRNA,protease,transposase	uncultured_Mediterranean_phage(16.67%)	57	NA	NA
QAZ53479.1|1103299_1104385_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	25.7	2.9e-11
QAZ55142.1|1104387_1106301_+|transposase	transposase	transposase	NA	NA	NA	NA
QAZ53480.1|1106302_1106668_+|transposase	transposase	transposase	NA	NA	NA	NA
QAZ53481.1|1106950_1107367_-	flavodoxin family protein	NA	NA	NA	NA	NA
QAZ53482.1|1107544_1108972_-	chloramphenicol/florfenicol efflux MFS transporter FexA	NA	NA	NA	NA	NA
QAZ53483.1|1110027_1110312_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53484.1|1110428_1110626_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53485.1|1110785_1111259_+	DUF4930 family protein	NA	NA	NA	NA	NA
QAZ53486.1|1111332_1111452_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53487.1|1111650_1112493_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
QAZ53488.1|1112492_1113023_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
QAZ53489.1|1113258_1113567_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
QAZ53490.1|1113572_1113893_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
QAZ53491.1|1113904_1114189_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
QAZ53492.1|1114672_1115965_+	GTPase ObgE	NA	NA	NA	NA	NA
QAZ53493.1|1115977_1116433_+	ACT domain-containing protein	NA	NA	NA	NA	NA
QAZ53494.1|1116446_1117049_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
QAZ53495.1|1117080_1118085_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
QAZ53496.1|1118086_1119112_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
QAZ53497.1|1119134_1120274_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
QAZ53498.1|1120292_1120553_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
QAZ53499.1|1120827_1123107_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
QAZ53500.1|1123309_1125583_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
QAZ53501.1|1125604_1126123_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
QAZ53502.1|1126550_1128740_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
QAZ53503.1|1128751_1129204_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
QAZ53504.1|1129200_1130076_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
QAZ53505.1|1130536_1131799_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
QAZ53506.1|1131814_1133581_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
QAZ53507.1|1133913_1134042_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53508.1|1134041_1134815_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
QAZ53509.1|1134975_1136250_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.4e-105
QAZ53510.1|1136334_1136757_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
QAZ53511.1|1136856_1137039_+	CsbD family protein	NA	NA	NA	NA	NA
QAZ53512.1|1137078_1137225_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53513.1|1137461_1138475_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
QAZ53514.1|1138786_1139929_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
QAZ53515.1|1139929_1141048_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QAZ53516.1|1141682_1142351_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QAZ53517.1|1142352_1144830_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
QAZ53518.1|1145172_1147803_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
QAZ53519.1|1147865_1148126_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
QAZ53520.1|1148129_1148558_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
QAZ53521.1|1148572_1148881_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
QAZ53522.1|1149165_1149804_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
QAZ53523.1|1149806_1150730_+	U32 family peptidase	NA	NA	NA	NA	NA
QAZ53524.1|1150741_1152010_+|protease	collagenase-like protease	protease	Q6DW11	Phage_TP	31.7	4.0e-36
QAZ53525.1|1152009_1152633_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
QAZ53526.1|1152660_1153137_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
QAZ53527.1|1153462_1154197_+	allophanate hydrolase	NA	NA	NA	NA	NA
QAZ53528.1|1154186_1155197_+	allophanate hydrolase subunit 2 family protein	NA	NA	NA	NA	NA
QAZ53529.1|1155198_1155648_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
QAZ53530.1|1155661_1157023_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
QAZ53531.1|1157022_1157775_+	LamB/YcsF family protein	NA	NA	NA	NA	NA
QAZ53532.1|1157786_1159016_+	divalent metal cation transporter	NA	NA	NA	NA	NA
QAZ53533.1|1160276_1160669_-	NimC/NimA family protein	NA	NA	NA	NA	NA
QAZ53534.1|1160953_1162216_-|transposase	IS1380-like element ISEnca1 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	92.9	1.2e-35
>prophage 6
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	1197138	1205468	2850509	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
QAZ53572.1|1197138_1198956_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
QAZ53573.1|1199179_1200286_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
QAZ53574.1|1200416_1201094_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
QAZ53575.1|1201096_1202197_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
QAZ53576.1|1202310_1203657_+	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
QAZ53577.1|1203666_1204557_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
QAZ53578.1|1204682_1205468_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	4.7e-19
>prophage 7
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	1480889	1496895	2850509	head,terminase,portal,integrase	Staphylococcus_phage(60.87%)	27	1478886:1478903	1503155:1503172
1478886:1478903	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
QAZ53825.1|1480889_1482233_-|head	phage head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	56.8	1.3e-138
QAZ53826.1|1482242_1483670_-|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	71.7	6.8e-194
QAZ53827.1|1483682_1484957_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.2	3.2e-195
QAZ53828.1|1484943_1485372_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
QAZ53829.1|1485524_1486013_-	RNA polymerase subunit sigma-70	NA	R9TMH4	Paenibacillus_phage	28.3	8.7e-08
QAZ53830.1|1486055_1486289_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53831.1|1486289_1486754_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
QAZ53832.1|1486750_1486858_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	1.2e-07
QAZ53833.1|1486988_1487519_-	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	2.3e-22
QAZ53834.1|1487511_1487823_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53835.1|1487828_1487987_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	6.7e-18
QAZ53836.1|1488001_1488292_-	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
QAZ53837.1|1488292_1489195_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
QAZ55150.1|1489207_1489702_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	6.4e-83
QAZ53838.1|1489782_1490562_-	chromosomal replication initiator DnaA	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
QAZ53839.1|1490562_1491099_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.9	4.8e-76
QAZ53840.1|1491103_1491370_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
QAZ53841.1|1491359_1491677_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
QAZ53842.1|1491763_1491925_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
QAZ53843.1|1492023_1492707_-	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
QAZ53844.1|1492767_1492974_+	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
QAZ53845.1|1493397_1493673_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ53846.1|1493699_1493918_-	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
QAZ53847.1|1494085_1494478_+	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
QAZ53848.1|1494624_1495008_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ53849.1|1495019_1495715_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	1.4e-06
QAZ53850.1|1495767_1496895_+|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
1503155:1503172	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 8
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	1752359	1760832	2850509		Synechococcus_phage(33.33%)	9	NA	NA
QAZ54089.1|1752359_1752926_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
QAZ54090.1|1752928_1753957_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	2.0e-62
QAZ54091.1|1753949_1755434_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
QAZ54092.1|1755412_1757602_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
QAZ54093.1|1757594_1758266_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
QAZ54094.1|1758267_1758531_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QAZ54095.1|1758530_1759235_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
QAZ54096.1|1759238_1760363_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
QAZ54097.1|1760349_1760832_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 9
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	1779899	1798495	2850509	holin,bacteriocin,protease,transposase	Staphylococcus_phage(50.0%)	23	NA	NA
QAZ54113.1|1779899_1780910_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
QAZ54114.1|1780991_1782173_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
QAZ54115.1|1782210_1782540_+	staphostatin B	NA	NA	NA	NA	NA
QAZ54116.1|1782777_1783599_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
QAZ54117.1|1783591_1784395_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
QAZ54118.1|1784381_1786055_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
QAZ54119.1|1786041_1787253_-	isochorismate synthase	NA	NA	NA	NA	NA
QAZ54120.1|1787329_1787434_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ54121.1|1787584_1788523_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
QAZ54122.1|1788574_1789126_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QAZ54123.1|1789215_1789506_+	NINE protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
QAZ54124.1|1789569_1789701_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54125.1|1791194_1791551_+	DoxX family protein	NA	NA	NA	NA	NA
QAZ54126.1|1791639_1791777_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
QAZ54127.1|1791917_1792208_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54128.1|1792295_1792937_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
QAZ54129.1|1792933_1793254_-	YxeA family protein	NA	NA	NA	NA	NA
QAZ54130.1|1795100_1796273_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
QAZ54131.1|1796358_1796550_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ55160.1|1796593_1796866_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
QAZ54132.1|1796875_1796977_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ55161.1|1797515_1797593_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
QAZ54133.1|1797892_1798495_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 10
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	2004652	2019383	2850509		uncultured_Caudovirales_phage(50.0%)	17	NA	NA
QAZ54332.1|2004652_2005414_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
QAZ54333.1|2005410_2006367_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
QAZ55165.1|2006353_2007325_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	9.5e-139
QAZ54334.1|2007795_2007900_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ54335.1|2008032_2009004_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
QAZ54336.1|2009121_2011227_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
QAZ54337.1|2011189_2011588_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
QAZ54338.1|2011737_2012004_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
QAZ54339.1|2012388_2013255_+	DMT family transporter	NA	NA	NA	NA	NA
QAZ54340.1|2013274_2013775_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
QAZ54341.1|2013804_2014050_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54342.1|2014115_2015621_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
QAZ54343.1|2015698_2015800_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ54344.1|2015890_2016808_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
QAZ54345.1|2017220_2017316_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ54346.1|2017487_2018030_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
QAZ54347.1|2018324_2019383_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 11
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	2031355	2039174	2850509		Pandoravirus(16.67%)	10	NA	NA
QAZ54357.1|2031355_2032507_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	1.2e-23
QAZ54358.1|2032490_2033084_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	1.4e-36
QAZ54359.1|2033434_2034103_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	1.1e-64
QAZ54360.1|2034104_2034524_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
QAZ54361.1|2034527_2035241_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
QAZ54362.1|2035339_2035924_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54363.1|2036203_2036644_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54364.1|2036984_2037458_+	DoxX family protein	NA	NA	NA	NA	NA
QAZ54365.1|2037432_2038119_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAZ54366.1|2038118_2039174_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
>prophage 12
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	2370856	2380400	2850509	integrase	Staphylococcus_phage(33.33%)	10	2363601:2363620	2377363:2377382
2363601:2363620	attL	TATAATTATTCCCACTCAAT	NA	NA	NA	NA
QAZ54666.1|2370856_2371201_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
QAZ54667.1|2371871_2374244_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	3.7e-136
QAZ54668.1|2374334_2374628_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
QAZ54669.1|2374628_2374853_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	58.8	7.5e-15
QAZ54670.1|2375038_2375299_-	DNA-binding protein	NA	NA	NA	NA	NA
QAZ54671.1|2375295_2375535_-	XRE family transcriptional regulator	NA	Q38329	Lactococcus_phage	40.0	2.5e-08
QAZ54672.1|2375667_2376054_+	XRE family transcriptional regulator	NA	U3PIS7	Lactobacillus_phage	41.2	3.8e-06
QAZ54673.1|2376137_2377274_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.0e-75
QAZ54674.1|2377367_2378909_-	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
2377363:2377382	attR	TATAATTATTCCCACTCAAT	NA	NA	NA	NA
QAZ54675.1|2378933_2380400_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 13
CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	2850509	2694333	2727457	2850509	transposase	Staphylococcus_phage(50.0%)	36	NA	NA
QAZ54956.1|2694333_2694729_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
QAZ54957.1|2694746_2696036_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.8	1.7e-188
QAZ54958.1|2696035_2696350_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	3.6e-39
QAZ54959.1|2696410_2697010_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	30.8	3.1e-15
QAZ54960.1|2697516_2698191_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.7e-126
QAZ54961.1|2698516_2699287_-	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA	NA
QAZ54962.1|2699446_2700430_-	protein rep	NA	A0A286QS97	Streptococcus_phage	62.0	6.1e-08
QAZ54963.1|2700673_2701348_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.7e-126
QAZ55199.1|2701542_2702445_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54964.1|2702460_2702904_+	AP2 domain-containing protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	43.6	1.5e-22
QAZ54965.1|2702927_2703353_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54966.1|2703485_2704160_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	4.1e-125
QAZ54967.1|2704298_2704523_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAZ54968.1|2705022_2706102_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.5	1.6e-38
QAZ55200.1|2706125_2706242_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ54969.1|2706550_2707354_-	lincosamide nucleotidyltransferase Lnu(B)	NA	NA	NA	NA	NA
QAZ54970.1|2707407_2708892_-	ABC-F type ribosomal protection protein Lsa(E)	NA	A0A2H4UUX5	Bodo_saltans_virus	26.0	2.6e-26
QAZ54971.1|2709980_2710439_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ55201.1|2710489_2710741_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ54972.1|2710958_2711768_-	ANT(9) family aminoglycoside nucleotidyltransferase Spw	NA	NA	NA	NA	NA
QAZ54973.1|2711899_2712427_-	adenine phosphoribosyltransferase	NA	A0A1X9I6E2	Streptococcus_phage	100.0	1.9e-93
QAZ54974.1|2712470_2713334_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	A0A1X9I6F2	Streptococcus_phage	100.0	8.7e-168
QAZ54975.1|2713366_2714101_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
QAZ54976.1|2714950_2715625_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.8	5.4e-125
QAZ55202.1|2715810_2715873_+	tetracycline resistance leader peptide	NA	NA	NA	NA	NA
QAZ54977.1|2715906_2717283_+	tetracycline efflux MFS transporter Tet(L)	NA	NA	NA	NA	NA
QAZ54978.1|2717331_2717532_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ54979.1|2717846_2719109_+	plasmid recombination protein	NA	NA	NA	NA	NA
QAZ54980.1|2719233_2719908_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	1.4e-125
QAZ54981.1|2719939_2720203_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ54982.1|2720669_2721842_+|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
QAZ55203.1|2721898_2722291_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
QAZ54983.1|2722291_2723731_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
QAZ54984.1|2723860_2725033_-|transposase	IS256 family transposase IS256	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
QAZ54985.1|2725632_2726262_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	29.1	3.1e-13
QAZ54986.1|2726611_2727457_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
