assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004136655.1_ASM413665v1	CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	3	589325-589415	2	CRISPRCasFinder	no	csa3	csa3,WYL,DEDDh,cas3,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|31aa|up_3|CP030136.1_587519_587612_-,NA|53aa|up_2|CP030136.1_588047_588206_-,NA|61aa|up_1|CP030136.1_588270_588453_+,NA|35aa|up_0|CP030136.1_588885_588990_+,NA|364aa|down_0|CP030136.1_589431_590523_-,NA|77aa|down_5|CP030136.1_594312_594543_+	NA|145aa|up_9|CP030136.1_578813_579248_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP030136.1_579259_581392_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP030136.1_581426_582965_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP030136.1_583645_585451_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP030136.1_585682_586465_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP030136.1_586532_587390_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP030136.1_587519_587612_-	NA	NA|53aa|up_2|CP030136.1_588047_588206_-	NA	NA|61aa|up_1|CP030136.1_588270_588453_+	NA	NA|35aa|up_0|CP030136.1_588885_588990_+	NA	NA|364aa|down_0|CP030136.1_589431_590523_-	NA	NA|327aa|down_1|CP030136.1_590788_591769_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP030136.1_591770_592091_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP030136.1_592242_592908_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP030136.1_593343_594282_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP030136.1_594312_594543_+	NA	NA|458aa|down_6|CP030136.1_595214_596588_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP030136.1_597044_597458_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP030136.1_597657_598101_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP030136.1_598221_598932_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCA_004136655.1_ASM413665v1	CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	4	717378-717467	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA|52aa|down_2|CP030136.1_718020_718176_+,NA|68aa|down_3|CP030136.1_718160_718364_+,NA|137aa|down_4|CP030136.1_718365_718776_+,NA|115aa|down_8|CP030136.1_721798_722143_+,NA|69aa|down_9|CP030136.1_722367_722574_+	NA|188aa|up_9|CP030136.1_707704_708268_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_8|CP030136.1_708503_708638_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|CP030136.1_709234_710020_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|CP030136.1_710380_711007_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_5|CP030136.1_711203_712463_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|CP030136.1_712487_713231_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|CP030136.1_713405_713690_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|CP030136.1_713765_715382_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|CP030136.1_715450_716623_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|CP030136.1_716636_717311_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|CP030136.1_717483_717702_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|CP030136.1_717706_718024_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|52aa|down_2|CP030136.1_718020_718176_+	NA	NA|68aa|down_3|CP030136.1_718160_718364_+	NA	NA|137aa|down_4|CP030136.1_718365_718776_+	NA	NA|98aa|down_5|CP030136.1_718776_719070_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_6|CP030136.1_719157_720027_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|490aa|down_7|CP030136.1_720043_721513_+	pfam05272, VirE, Virulence-associated protein E	NA|115aa|down_8|CP030136.1_721798_722143_+	NA	NA|69aa|down_9|CP030136.1_722367_722574_+	NA
GCA_004136655.1_ASM413665v1	CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	6	1176967-1177054	5	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TGGGGCCCCAACACAGAAGCTGACGAAAAG	30	1	9	1176997-1177024|1176997-1177024|1176997-1177024|1176997-1177024|1176997-1177024|1176997-1177024|1176997-1177024|1176997-1177024|1176997-1177024	CP030136.1_791273-791300|CP030136.1_801966-801993|CP030136.1_1356218-1356245|CP030136.1_1576643-1576616|CP030136.1_1762326-1762353|CP030136.1_1879993-1879966|CP030136.1_1963361-1963388|CP030136.1_1970745-1970772|CP030136.1_2425071-2425044	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|190aa|up_9|CP030136.1_1167631_1168201_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|CP030136.1_1168190_1168775_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|CP030136.1_1168775_1169129_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|CP030136.1_1169131_1169848_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|CP030136.1_1169887_1170574_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|CP030136.1_1170665_1171127_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|CP030136.1_1171185_1173333_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|CP030136.1_1173389_1174364_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|CP030136.1_1174408_1174660_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|CP030136.1_1175005_1176829_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|CP030136.1_1177391_1178516_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|CP030136.1_1178616_1179594_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|CP030136.1_1179625_1180252_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|CP030136.1_1180320_1182153_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|CP030136.1_1182288_1183428_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|CP030136.1_1183431_1184370_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|CP030136.1_1184371_1185124_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|CP030136.1_1185130_1186477_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|CP030136.1_1186769_1186946_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|CP030136.1_1187189_1187873_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCA_004136655.1_ASM413665v1	CP030136	Staphylococcus aureus strain S57 chromosome, complete genome	7	2133298-2133391	6	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GGCTTTTATGCAGTTGCTGCACAAACAA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|239aa|up_5|CP030136.1_2128126_2128843_-,NA|169aa|up_4|CP030136.1_2129004_2129511_-,NA	NA|75aa|up_9|CP030136.1_2124249_2124474_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|CP030136.1_2124667_2125597_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|CP030136.1_2126544_2126919_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP030136.1_2127169_2127958_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP030136.1_2128126_2128843_-	NA	NA|169aa|up_4|CP030136.1_2129004_2129511_-	NA	NA|267aa|up_3|CP030136.1_2129646_2130447_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP030136.1_2130430_2131150_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP030136.1_2131204_2132155_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP030136.1_2132302_2133130_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP030136.1_2133506_2134142_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|CP030136.1_2134411_2136073_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|CP030136.1_2136069_2136453_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|CP030136.1_2136761_2137772_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|CP030136.1_2138270_2138792_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|CP030136.1_2138819_2140115_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|CP030136.1_2140154_2140631_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|CP030136.1_2140799_2141336_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|CP030136.1_2141546_2142485_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|CP030136.1_2142754_2143381_-	pfam04276, DUF443, Protein of unknown function (DUF443)
