The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	7800	72368	4982118	protease,transposase	Ralstonia_phage(40.0%)	54	NA	NA
QBA16625.1|7800_8571_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QBA13263.1|8757_9564_+	M48 family peptidase	NA	NA	NA	NA	NA
QBA13264.1|9840_11034_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBA13265.1|11941_12703_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
QBA13266.1|12749_13172_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
QBA13267.1|13175_13589_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
QBA13268.1|13884_14652_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QBA13269.1|14662_14932_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13270.1|15006_16467_-	cardiolipin synthase	NA	NA	NA	NA	NA
QBA13271.1|17113_18124_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	37.8	9.5e-49
QBA13272.1|18395_19598_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
QBA13273.1|19739_21878_+	TonB-dependent receptor	NA	A0A1B0VCF0	Salmonella_phage	40.9	5.3e-65
QBA16626.1|22088_22382_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13274.1|22498_23044_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13275.1|23157_24138_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	55.8	1.6e-88
QBA13276.1|24185_25352_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA	NA
QBA13277.1|25498_26065_-	DUF1295 domain-containing protein	NA	NA	NA	NA	NA
QBA16627.1|27539_28748_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA	NA
QBA13278.1|29375_30398_-	sugar kinase	NA	NA	NA	NA	NA
QBA13279.1|31220_32189_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA13280.1|33209_34529_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA13281.1|35300_35993_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.2	4.4e-05
QBA13282.1|36594_37971_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	56.5	9.2e-79
QBA13283.1|40983_41226_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13284.1|41167_41491_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13285.1|41621_42008_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13286.1|41956_42937_-|transposase	IS5-like element ISXoo7 family transposase	transposase	A0A077K814	Ralstonia_phage	55.9	5.3e-89
QBA13287.1|43296_43548_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13288.1|43555_44845_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.2	2.1e-40
QBA13289.1|45284_45620_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16628.1|45894_46326_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13290.1|46674_48084_-	FAD-binding protein	NA	NA	NA	NA	NA
QBA13291.1|49401_49662_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13292.1|49678_50011_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13293.1|50010_50469_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13294.1|50828_52043_-|transposase	IS4-like element ISXo14 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	33.4	1.8e-54
QBA13295.1|52563_53361_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13296.1|55076_56042_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA13297.1|56038_56239_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13298.1|56460_57849_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA13299.1|57991_58960_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA13300.1|59109_60429_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA13301.1|60640_61216_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16629.1|61310_61958_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13302.1|62000_62798_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13303.1|62806_63616_-	glycosyl transferase	NA	NA	NA	NA	NA
QBA13304.1|63791_64595_+	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
QBA13305.1|64698_65676_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13306.1|65672_66938_+	heme biosynthesis protein HemY	NA	NA	NA	NA	NA
QBA16630.1|67363_67927_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13307.1|68017_69313_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
QBA13308.1|69381_70287_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13309.1|70489_70870_-	peptide-binding protein	NA	NA	NA	NA	NA
QBA16631.1|71402_72368_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	133598	203841	4982118	protease,transposase	Erwinia_phage(22.22%)	51	NA	NA
QBA13345.1|133598_134361_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13346.1|134604_135609_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13347.1|135647_136577_-	GAF domain-containing protein	NA	NA	NA	NA	NA
QBA13348.1|137124_139995_-	insulinase family protein	NA	NA	NA	NA	NA
QBA13349.1|140250_142875_+	PAS domain S-box protein	NA	G3MA91	Bacillus_virus	28.6	1.9e-08
QBA16640.1|144109_145540_-	endoglucanase	NA	H2DE45	Erwinia_phage	32.3	7.4e-47
QBA13350.1|145747_147235_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	56.7	1.0e-123
QBA13351.1|148625_150275_+	peptidase M20	NA	NA	NA	NA	NA
QBA13352.1|150202_150463_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13353.1|150588_151352_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13354.1|152078_154016_+	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA	NA
QBA13355.1|154167_154836_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBA13356.1|154840_155893_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	33.6	1.8e-18
QBA13357.1|155923_156661_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QBA13358.1|156691_157606_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
QBA13359.1|158156_158957_-	DUF481 domain-containing protein	NA	NA	NA	NA	NA
QBA13360.1|159515_160481_+	YafY family transcriptional regulator	NA	NA	NA	NA	NA
QBA13361.1|160589_161159_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13362.1|161546_161858_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13363.1|161925_164019_+	S9 family peptidase	NA	NA	NA	NA	NA
QBA13364.1|164092_164533_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13365.1|164858_166043_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
QBA13366.1|166082_166265_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16641.1|168644_169043_+	DUF454 domain-containing protein	NA	NA	NA	NA	NA
QBA13367.1|169100_169337_+	sugar transporter	NA	NA	NA	NA	NA
QBA13368.1|170167_170848_+	DUF484 family protein	NA	NA	NA	NA	NA
QBA16642.1|171047_171965_+	tyrosine recombinase XerC	NA	A0A142F2H8	Mycobacterium_phage	27.7	2.2e-12
QBA13369.1|172480_173032_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
QBA13370.1|173142_174510_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A2H5BJT2	Erwinia_phage	29.1	6.2e-43
QBA13371.1|174683_175298_-	HAD family hydrolase	NA	NA	NA	NA	NA
QBA13372.1|175606_176326_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13373.1|176497_178510_-	M1 family peptidase	NA	NA	NA	NA	NA
QBA13374.1|178631_179522_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
QBA13375.1|179694_180456_-	ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	NA	NA	NA	NA	NA
QBA13376.1|182182_183259_+	HlyD family secretion protein	NA	NA	NA	NA	NA
QBA13377.1|184509_185010_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBA13378.1|185006_185462_+	nucleoside deaminase	NA	NA	NA	NA	NA
QBA13379.1|186602_187401_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13380.1|187456_188425_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA13381.1|188665_189598_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
QBA13382.1|189872_190919_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	21.2	4.6e-06
QBA13383.1|191091_192438_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
QBA13384.1|192434_192920_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
QBA13385.1|192923_194984_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
QBA13386.1|194980_196099_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
QBA13387.1|196011_196272_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13388.1|196860_197856_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
QBA16643.1|197915_199400_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13389.1|199396_200476_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13390.1|200451_202455_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
QBA13391.1|202464_203841_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
>prophage 3
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	243168	288390	4982118	transposase,tRNA	Staphylococcus_prophage(33.33%)	26	NA	NA
QBA13414.1|243168_244125_+|transposase	IS30-like element IS1112a family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.2	1.6e-42
QBA13415.1|244406_247097_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA13416.1|247247_250145_+	glycoside hydrolase family 2 protein	NA	L0N6M2	Herpes_simplex_virus	25.2	8.8e-23
QBA13417.1|252688_253855_+	DUF1624 domain-containing protein	NA	NA	NA	NA	NA
QBA13418.1|254069_254837_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBA13419.1|254881_256159_+	glucose/galactose MFS transporter	NA	NA	NA	NA	NA
QBA13420.1|256199_257276_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBA13421.1|257272_258301_+	SIS domain-containing protein	NA	NA	NA	NA	NA
QBA13422.1|258303_259458_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
QBA13423.1|259877_260483_-	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD	NA	NA	NA	NA	NA
QBA13424.1|260479_261733_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
QBA13425.1|261734_263633_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
QBA13426.1|263634_265632_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
QBA13427.1|266299_266530_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13428.1|266991_267957_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA13429.1|271366_272130_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13430.1|272465_273434_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA13431.1|273592_274828_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA13432.1|274965_275922_+|transposase	IS30-like element IS1112a family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	8.1e-42
QBA13433.1|276097_277060_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
QBA16648.1|277099_278332_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	K4IEX3	Salmonella_phage	41.7	2.0e-72
QBA13434.1|279978_280776_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13435.1|281708_281975_-|transposase	transposase	transposase	NA	NA	NA	NA
QBA13436.1|283748_284512_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13437.1|284704_287278_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA	NA
QBA13438.1|287400_288390_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.2	7.5e-99
>prophage 4
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	668579	723414	4982118	transposase,plate	uncultured_Caudovirales_phage(50.0%)	38	NA	NA
QBA13739.1|668579_669548_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA13740.1|671031_673611_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	29.0	2.5e-37
QBA13741.1|673597_676663_+	DNA repair protein	NA	NA	NA	NA	NA
QBA13742.1|676810_677770_-	sulfatase modifying factor 1	NA	NA	NA	NA	NA
QBA16686.1|677837_678404_+	DNA repair protein	NA	NA	NA	NA	NA
QBA13743.1|678879_679848_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA13744.1|680762_683426_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	28.3	3.9e-41
QBA13745.1|683425_684322_+	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
QBA13746.1|684318_684783_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBA13747.1|684803_685286_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBA13748.1|685282_685606_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13749.1|685602_686067_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBA16687.1|686090_686570_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBA13750.1|686656_688399_+	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
QBA13751.1|688480_689026_+	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
QBA13752.1|689012_692078_+	DNA repair protein	NA	NA	NA	NA	NA
QBA13753.1|692130_693093_-	sulfatase modifying factor 1	NA	A0A7H6	Microcystis_virus	30.5	1.2e-16
QBA13754.1|693278_695948_+	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	28.3	6.6e-41
QBA13755.1|695944_696769_+	DUF4123 domain-containing protein	NA	NA	NA	NA	NA
QBA13756.1|696761_697358_+	DUF3304 domain-containing protein	NA	NA	NA	NA	NA
QBA13757.1|697426_699589_+	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
QBA13758.1|699569_699959_+	DUF2345 domain-containing protein	NA	NA	NA	NA	NA
QBA13759.1|702522_703500_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13760.1|703496_706214_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
QBA13761.1|706224_707013_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
QBA13762.1|707997_709077_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13763.1|709073_710558_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16688.1|710617_713335_-	type VI secretion system tip protein VgrG	NA	NA	NA	NA	NA
QBA13764.1|713441_714230_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
QBA13765.1|714229_715564_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
QBA13766.1|715715_716324_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
QBA16689.1|716710_717199_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13767.1|717245_717746_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
QBA13768.1|717749_719246_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
QBA13769.1|719387_719885_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
QBA13770.1|720032_720521_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
QBA13771.1|720523_722359_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
QBA13772.1|722322_723414_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 5
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	764760	840115	4982118	protease,transposase	Ralstonia_phage(15.38%)	49	NA	NA
QBA13797.1|764760_765559_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13798.1|766050_766476_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A1B3AYM0	Gordonia_phage	48.5	5.8e-08
QBA13799.1|766485_766707_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
QBA13800.1|766856_767462_+	repressor LexA	NA	A0A1W6JNS2	Morganella_phage	39.2	8.6e-13
QBA16695.1|767511_768114_+	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA	NA
QBA13801.1|768123_769542_+	DNA polymerase Y family protein	NA	NA	NA	NA	NA
QBA16696.1|769554_769737_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16694.1|769777_772975_+	error-prone DNA polymerase	NA	A0A1B1PA77	Streptomyces_phage	24.8	6.0e-81
QBA16697.1|773285_774104_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
QBA13802.1|774216_775614_-|protease	serine protease	protease	NA	NA	NA	NA
QBA13803.1|776042_778013_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
QBA13804.1|778337_779306_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA13805.1|779678_780041_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13806.1|780297_781143_+	transporter	NA	NA	NA	NA	NA
QBA16698.1|781409_783530_+	S9 family peptidase	NA	NA	NA	NA	NA
QBA13807.1|786976_787438_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13808.1|787569_788295_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBA16699.1|788678_789713_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.8	8.0e-43
QBA13809.1|790733_791702_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	5.6e-99
QBA16700.1|794832_796071_-	type III secretion system effector protein	NA	NA	NA	NA	NA
QBA13810.1|796346_796535_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13811.1|796896_799002_-	catalase	NA	A0A2K9L572	Tupanvirus	47.5	6.2e-135
QBA13812.1|799219_799393_-	oxidoreductase	NA	NA	NA	NA	NA
QBA13813.1|801168_804024_+	DUF2339 domain-containing protein	NA	NA	NA	NA	NA
QBA13814.1|804020_805379_+	DUF3999 domain-containing protein	NA	NA	NA	NA	NA
QBA13815.1|805442_805670_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13816.1|805712_806888_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
QBA13817.1|806884_807529_+	HAD family hydrolase	NA	NA	NA	NA	NA
QBA13818.1|807785_809252_+	pyruvate kinase	NA	NA	NA	NA	NA
QBA13819.1|809834_810839_+	fructose-bisphosphate aldolase class I	NA	A0A0K0KVJ8	Prochlorococcus_phage	48.2	3.9e-79
QBA13820.1|811040_811580_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	42.6	9.9e-29
QBA13821.1|811775_812282_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
QBA13822.1|812581_813541_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	49.0	3.8e-79
QBA13823.1|813557_814763_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
QBA13824.1|814931_815915_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA13825.1|815925_816207_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13826.1|816626_816869_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13827.1|817276_818473_-	sensor histidine kinase	NA	NA	NA	NA	NA
QBA13828.1|818795_819233_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
QBA13829.1|819370_821431_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA13830.1|823157_823883_-	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA	NA
QBA13831.1|823879_825601_-	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA	NA
QBA13832.1|825709_827557_-	assimilatory sulfite reductase (NADPH) flavoprotein subunit	NA	NA	NA	NA	NA
QBA13833.1|827737_828646_+	sulfate adenylyltransferase subunit 2	NA	NA	NA	NA	NA
QBA13834.1|828645_830622_+	sulfate adenylyltransferase subunit CysN	NA	A0A1V0SGC3	Hokovirus	30.6	5.6e-29
QBA13835.1|831056_832127_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBA13836.1|832123_835249_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	22.8	7.0e-74
QBA13837.1|835600_838270_+	M1 family peptidase	NA	A0A0P0IY26	Acinetobacter_phage	48.5	9.6e-242
QBA16701.1|839149_840115_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	845447	912192	4982118	protease,integrase,transposase,tRNA	Ralstonia_phage(33.33%)	53	847700:847759	864368:865031
QBA13839.1|845447_846210_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13840.1|846342_846765_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
QBA13841.1|846825_847539_-	FAA hydrolase family protein	NA	NA	NA	NA	NA
847700:847759	attL	GGGCAGTCTCAAGATTCAAGTGCAACACGTGATTTGAGTGCTGCGATTTCTTCCTCCATT	NA	NA	NA	NA
QBA13842.1|850584_850860_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16703.1|851119_851461_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA	NA
QBA13843.1|851518_853381_-	SLC13 family permease	NA	NA	NA	NA	NA
QBA13844.1|853456_854215_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
QBA13845.1|854230_854524_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13846.1|854516_855311_-	thiazole synthase	NA	NA	NA	NA	NA
QBA13847.1|855846_856047_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
QBA13848.1|856237_858022_+	autotransporter domain-containing esterase	NA	NA	NA	NA	NA
QBA13849.1|858286_858511_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16704.1|859738_860158_-|integrase	integrase	integrase	C8CLF4	Xylella_phage	65.2	5.1e-41
QBA13850.1|862495_862888_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13851.1|862978_863371_+	histone-like nucleoid-structuring protein	NA	NA	NA	NA	NA
QBA13852.1|863403_864202_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13853.1|865073_865836_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
864368:865031	attR	GGGCAGTCTCAAGATTCAAGTGCAACACGTGATTTGAGTGCTGCGATTTCTTCCTCCATTGCCTCGCTTGGTGTCTTCCATCCGAGCGTCTGACGAGGGCGGGTATTCATCAGCAGTGCGATGTGATTGAGATACTCTTGGCTGACAGTGGACAGGTCGGCGCCCTTGGGCAGGAATTGGCGCAGCAGGCCGTTGGTGTTCTCGTTACTTCCCCGCTGCCACGGCGCATGTGGATCAGCGAACCACACGTCGATGTTCAATCCTTGCATCAGCTCGGCGTAGCACGTGAGCTCGGTACCGCGATCGTAGGTCAGACTTGTCCGCATTGAGGCCGGCAGTTTCTTCATTTGCCGGGTAAACCCTTCCAGCGCATCTGCGGCCGTGCAGCCATCCATGCGGCACAGCACGACAAAGCGCGTCTTGCGTTCCACCAACGTGCCCACGCAAGAACGATTGAATGCGCCCTTGATCAAGTCGCCTTCCCAATGACCTGGGACCAAGCGCGTCTGCACTTCTTCGGGGCGATGCACAATCCGCAACTCCTCCGGCACCCAGCTGCGTGTGGCCGCCGTTGTACGCCGTCATCCGCGTTTGGGCTTGTGCTGACGCAGGGCCTGGACCAGTTCCTTCTTCAAGCCCCCACGCGGATGCGCGTAGATGCTAG	NA	NA	NA	NA
QBA13854.1|865833_866247_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
QBA13855.1|867322_868291_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
QBA13856.1|868451_869420_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	8.7e-100
QBA13857.1|869970_872103_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
QBA13858.1|872404_873168_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA13859.1|873408_874374_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA13860.1|874370_874898_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13861.1|875043_876258_+|transposase	IS4-like element ISXo14 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	33.4	1.1e-54
QBA13862.1|876345_877665_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA13863.1|877755_877947_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13864.1|877914_878928_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
QBA13865.1|878961_879162_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
QBA13866.1|879231_880551_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA13867.1|881145_881439_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13868.1|881803_881992_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13869.1|882048_882812_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16705.1|882936_883902_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA13870.1|884201_884651_-	DUF4442 domain-containing protein	NA	NA	NA	NA	NA
QBA13871.1|884906_885764_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.8	1.3e-11
QBA13872.1|885968_886580_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
QBA13873.1|886652_889295_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.7	2.7e-172
QBA13874.1|889808_890444_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13875.1|890466_891495_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
QBA13876.1|891491_892391_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
QBA13877.1|892447_892864_+	ribosome silencing factor	NA	NA	NA	NA	NA
QBA13878.1|892875_893991_+	J domain-containing protein	NA	NA	NA	NA	NA
QBA13879.1|894048_894522_-	DUF839 domain-containing protein	NA	NA	NA	NA	NA
QBA13880.1|895076_895547_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
QBA13881.1|896965_900079_-	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA13882.1|900550_901285_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
QBA13883.1|901423_901996_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
QBA13884.1|901995_903495_+	ribonuclease G	NA	NA	NA	NA	NA
QBA13885.1|903628_907549_+	TIGR02099 family protein	NA	NA	NA	NA	NA
QBA13886.1|908395_909841_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
QBA13887.1|910097_910679_-	ribosome-associated protein	NA	NA	NA	NA	NA
QBA16706.1|910824_912192_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
>prophage 7
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	1045314	1209525	4982118	transposase,plate	Ralstonia_phage(46.15%)	108	NA	NA
QBA16720.1|1045314_1046397_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA16721.1|1049186_1049723_-	hypothetical protein	NA	A0A2I2L3Z7	Orpheovirus	33.8	4.0e-14
QBA13989.1|1051229_1052261_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA13990.1|1052849_1053170_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13991.1|1053504_1054104_+	transcriptional regulator	NA	NA	NA	NA	NA
QBA13992.1|1054100_1055024_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
QBA16722.1|1055103_1055313_-	hypothetical protein	NA	NA	NA	NA	NA
QBA13993.1|1056039_1056282_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13994.1|1057793_1058282_+	hypothetical protein	NA	NA	NA	NA	NA
QBA13995.1|1061194_1062817_+	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA	NA
QBA13996.1|1063181_1063460_-	Fe(2+)-trafficking protein	NA	NA	NA	NA	NA
QBA13997.1|1063483_1064557_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
QBA13998.1|1065035_1066652_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
QBA13999.1|1066856_1067573_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBA14000.1|1067730_1068669_+	hydroxyproline-2-epimerase	NA	NA	NA	NA	NA
QBA14001.1|1068668_1069931_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
QBA14002.1|1069927_1070173_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
QBA14003.1|1070144_1071479_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
QBA14004.1|1071475_1072384_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
QBA14005.1|1072594_1074211_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
QBA14006.1|1074207_1075407_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
QBA14007.1|1075524_1077357_+	DUF885 family protein	NA	NA	NA	NA	NA
QBA14008.1|1077353_1079219_+	DUF885 family protein	NA	NA	NA	NA	NA
QBA16723.1|1079281_1080868_+	amino acid permease	NA	NA	NA	NA	NA
QBA14009.1|1083192_1083480_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14010.1|1083726_1083933_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14011.1|1083974_1084565_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14012.1|1084568_1084913_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14013.1|1084909_1085206_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14014.1|1085413_1086985_-	peptidase S53	NA	A0A1V0SLL0	Klosneuvirus	37.4	5.2e-70
QBA14015.1|1087448_1089806_+	Tat pathway signal protein	NA	NA	NA	NA	NA
QBA14016.1|1090306_1093144_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	26.1	2.4e-49
QBA14017.1|1093382_1097747_+	carbohydrate-binding protein	NA	NA	NA	NA	NA
QBA14018.1|1097743_1099330_+	glycosyl hydrolase family 43	NA	NA	NA	NA	NA
QBA14019.1|1099651_1101997_+	S9 family peptidase	NA	NA	NA	NA	NA
QBA14020.1|1102036_1102249_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14021.1|1102493_1102925_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA16724.1|1102909_1103503_+	hypothetical protein	NA	A0A0P0I887	Acinetobacter_phage	33.0	1.6e-11
QBA14022.1|1106825_1109201_+	glycoside hydrolase family 127 protein	NA	NA	NA	NA	NA
QBA16725.1|1109876_1110911_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.8	8.0e-43
QBA14023.1|1111748_1112984_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA16726.1|1113032_1113239_+|transposase	transposase	transposase	NA	NA	NA	NA
QBA14024.1|1114912_1115290_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14025.1|1115495_1116749_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
QBA14026.1|1117338_1117701_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14027.1|1119094_1119289_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
QBA14028.1|1120097_1121075_-	siroheme synthase	NA	NA	NA	NA	NA
QBA14029.1|1122282_1123248_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14030.1|1123612_1123792_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14031.1|1124231_1125194_-|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
QBA14032.1|1125322_1126291_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA14033.1|1126606_1127590_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.2	7.5e-99
QBA16727.1|1128029_1128287_+	stress-induced protein	NA	NA	NA	NA	NA
QBA14034.1|1131559_1132330_-	phosphopantetheinyl transferase	NA	NA	NA	NA	NA
QBA14035.1|1132699_1133992_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
QBA14036.1|1133975_1135238_-	TIGR03862 family flavoprotein	NA	NA	NA	NA	NA
QBA14037.1|1135249_1135681_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
QBA14038.1|1135739_1136105_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14039.1|1136238_1137207_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA14040.1|1137364_1138126_+	sulfurtransferase	NA	NA	NA	NA	NA
QBA14041.1|1138347_1138995_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QBA14042.1|1139098_1139861_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14043.1|1140387_1144101_-	ribonuclease E/G	NA	NA	NA	NA	NA
QBA14044.1|1144511_1145498_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
QBA14045.1|1147662_1147923_-	zinc transporter ZupT	NA	NA	NA	NA	NA
QBA14046.1|1147949_1148183_-	zinc transporter ZupT	NA	NA	NA	NA	NA
QBA14047.1|1148198_1148621_-	energy transducer TonB	NA	NA	NA	NA	NA
QBA14048.1|1148617_1148974_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
QBA14049.1|1149061_1149661_+	Fe-S biogenesis protein NfuA	NA	NA	NA	NA	NA
QBA14050.1|1152159_1154994_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16728.1|1155022_1155769_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14051.1|1155786_1158129_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14052.1|1158159_1158897_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14053.1|1158921_1160838_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14054.1|1160889_1161858_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA14055.1|1162043_1163279_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA14056.1|1163449_1164766_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14057.1|1164901_1165870_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA16729.1|1167228_1167735_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
QBA14058.1|1167727_1169242_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
QBA14059.1|1169341_1169845_+	Hcp1 family type VI secretion system effector	NA	NA	NA	NA	NA
QBA14060.1|1169880_1170714_+	ImpE protein	NA	NA	NA	NA	NA
QBA14061.1|1170701_1171205_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
QBA14062.1|1171208_1173086_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
QBA14063.1|1173049_1174060_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
QBA14064.1|1174092_1176798_+	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	29.3	4.3e-80
QBA14065.1|1176986_1177484_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14066.1|1177717_1178044_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14067.1|1178430_1178889_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14068.1|1179153_1181091_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	28.6	3.4e-39
QBA14069.1|1181099_1181639_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14070.1|1181635_1183027_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
QBA14071.1|1183023_1184361_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
QBA14072.1|1184362_1185679_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
QBA14073.1|1185682_1189141_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
QBA14074.1|1189137_1189785_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
QBA14075.1|1189781_1190504_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
QBA14076.1|1190500_1193404_+	serine/threonine protein kinase	NA	A0A2R8FF19	Brazilian_cedratvirus	25.0	2.5e-09
QBA14077.1|1193400_1193727_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14078.1|1193786_1194585_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14079.1|1194646_1195445_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14080.1|1195611_1196640_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
QBA14081.1|1196648_1197629_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA14082.1|1197742_1200202_-	two-component system VirA-like sensor kinase	NA	NA	NA	NA	NA
QBA14083.1|1200198_1201191_-	cytochrome-c peroxidase	NA	NA	NA	NA	NA
QBA16730.1|1201187_1201895_-	DNA-binding response regulator	NA	NA	NA	NA	NA
QBA16731.1|1204930_1208011_-	histidine kinase	NA	NA	NA	NA	NA
QBA14084.1|1208427_1209525_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	1302452	1314227	4982118	tRNA	Pseudomonas_phage(22.22%)	14	NA	NA
QBA16747.1|1302452_1304129_+	2-polyprenylphenol 6-hydroxylase	NA	E5EQ95	Micromonas_sp._RCC1109_virus	27.2	3.3e-38
QBA14147.1|1304217_1304859_+	LexA repressor 2	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
QBA14148.1|1305031_1306066_+	DNA recombination/repair protein RecA	NA	A0A0S2MVG1	Bacillus_phage	60.7	6.2e-112
QBA14149.1|1306114_1306318_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14150.1|1306368_1306857_+	recombination regulator RecX	NA	NA	NA	NA	NA
QBA14151.1|1306958_1309607_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.6	3.7e-84
QBA14152.1|1309746_1309959_+	carbon storage regulator	NA	J7I430	Pseudomonas_phage	76.5	1.3e-13
QBA16748.1|1310684_1311089_+	helix-turn-helix domain-containing protein	NA	A0A1W6JTD5	Pseudomonas_phage	56.6	1.1e-32
QBA16749.1|1311476_1311776_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14153.1|1311798_1312026_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14154.1|1311961_1312657_+	DNA helicase	NA	E5DV83	Deep-sea_thermophilic_phage	41.0	5.6e-16
QBA14155.1|1312661_1313411_+	isopentenyl transferase	NA	NA	NA	NA	NA
QBA14156.1|1313654_1313885_+	hypothetical protein	NA	D5LH07	Escherichia_phage	63.8	4.7e-20
QBA14157.1|1313927_1314227_+	endolysin	NA	A0A1W6JT17	Escherichia_phage	66.7	1.5e-15
>prophage 9
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	1362407	1442828	4982118	transposase,tRNA	uncultured_Caudovirales_phage(47.06%)	57	NA	NA
QBA14199.1|1362407_1363109_-|transposase	transposase	transposase	A9YX10	Burkholderia_phage	32.9	1.9e-16
QBA14200.1|1365915_1366863_+	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
QBA14201.1|1367116_1368241_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.7	9.4e-05
QBA14202.1|1368445_1369963_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	39.9	3.8e-86
QBA14203.1|1370104_1371241_+	two-component system response regulator	NA	NA	NA	NA	NA
QBA14204.1|1371242_1371581_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14205.1|1371605_1373783_+	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	32.8	3.0e-47
QBA14206.1|1373794_1374664_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
QBA14207.1|1374840_1376523_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.8	7.1e-33
QBA14208.1|1377172_1379941_-	aconitate hydratase AcnA	NA	NA	NA	NA	NA
QBA14209.1|1380088_1380337_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
QBA14210.1|1380333_1380744_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
QBA14211.1|1380809_1383401_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
QBA14212.1|1383754_1384570_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
QBA16755.1|1385225_1387469_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBA14213.1|1387577_1388654_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
QBA14214.1|1388650_1389247_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
QBA14215.1|1389243_1390110_-	chemotaxis protein CheR	NA	NA	NA	NA	NA
QBA14216.1|1390362_1392762_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	58.3	7.9e-09
QBA16756.1|1392840_1393185_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14217.1|1393404_1394203_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14218.1|1395051_1395534_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
QBA14219.1|1395669_1396467_-	pilus assembly protein PilZ	NA	NA	NA	NA	NA
QBA14220.1|1396536_1396746_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14221.1|1397424_1399686_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	54.5	1.3e-10
QBA14222.1|1400079_1402341_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.9	9.3e-12
QBA14223.1|1402932_1405008_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.9	1.3e-12
QBA16757.1|1405692_1407804_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.8	3.2e-14
QBA14224.1|1408532_1410779_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.2	2.9e-13
QBA14225.1|1411019_1411985_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14226.1|1412481_1414824_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	63.2	4.5e-09
QBA14227.1|1414837_1415599_-	transporter	NA	NA	NA	NA	NA
QBA14228.1|1415914_1416601_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.2	2.8e-12
QBA14229.1|1418704_1420714_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
QBA14230.1|1420747_1421113_-	response regulator	NA	W8CYM9	Bacillus_phage	39.3	2.7e-14
QBA14231.1|1421109_1421418_-	STAS domain-containing protein	NA	NA	NA	NA	NA
QBA14232.1|1421518_1422541_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
QBA14233.1|1422537_1423320_-	ParA family protein	NA	Q8JL10	Natrialba_phage	37.7	1.0e-13
QBA14234.1|1423321_1424296_-	flagellar motor protein MotD	NA	NA	NA	NA	NA
QBA14235.1|1424302_1425043_-	flagellar motor protein	NA	NA	NA	NA	NA
QBA14236.1|1425131_1425485_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16758.1|1425481_1425997_-	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA14237.1|1426019_1426412_-	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA14238.1|1426563_1427271_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	51.2	8.4e-52
QBA14239.1|1427346_1427547_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14240.1|1427695_1429501_-	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA14241.1|1429755_1430208_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14242.1|1430702_1430891_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
QBA16759.1|1431257_1434299_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA14243.1|1435764_1436733_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA14244.1|1437232_1437868_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14245.1|1437929_1438307_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14246.1|1438248_1438557_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14247.1|1438553_1438970_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
QBA14248.1|1440074_1441394_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14249.1|1441621_1441936_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
QBA14250.1|1441868_1442828_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	1466066	1543078	4982118	transposase,tRNA	Ralstonia_phage(18.18%)	47	NA	NA
QBA14259.1|1466066_1467443_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
QBA14260.1|1467579_1467777_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14261.1|1468036_1469139_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.0	6.5e-43
QBA14262.1|1471365_1472601_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA14263.1|1472961_1473930_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA16761.1|1474596_1475733_-	carbohydrate porin	NA	NA	NA	NA	NA
QBA14264.1|1476051_1477794_-	PTS fructose transporter subunit EIIBC	NA	NA	NA	NA	NA
QBA14265.1|1477952_1478909_-	1-phosphofructokinase family hexose kinase	NA	NA	NA	NA	NA
QBA14266.1|1478905_1481422_-	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	28.5	6.3e-09
QBA14267.1|1481582_1482578_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBA16762.1|1483284_1484250_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14268.1|1485225_1488396_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
QBA14269.1|1488408_1489713_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBA14270.1|1489727_1490387_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBA14271.1|1495955_1496195_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14272.1|1496136_1497120_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.5	1.5e-99
QBA14273.1|1497244_1498231_-	two-component system response regulator	NA	W8CYM9	Bacillus_phage	26.8	2.8e-05
QBA14274.1|1498264_1502359_-	response regulator	NA	A0A1V0SGX0	Hokovirus	28.4	1.1e-55
QBA14275.1|1502500_1503805_-	DUF445 family protein	NA	NA	NA	NA	NA
QBA14276.1|1503975_1504830_-	plasmid replication/partition related protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	39.8	6.4e-14
QBA16763.1|1504996_1508134_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14277.1|1508194_1509547_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
QBA14278.1|1510076_1511801_+	MFS transporter	NA	NA	NA	NA	NA
QBA14279.1|1511807_1512653_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
QBA14280.1|1512649_1514998_+	CbbBc protein	NA	NA	NA	NA	NA
QBA14281.1|1514957_1515266_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14282.1|1515571_1516852_+	MFS transporter	NA	NA	NA	NA	NA
QBA14283.1|1517159_1518404_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.4	2.5e-19
QBA14284.1|1518540_1519857_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
QBA14285.1|1519856_1521236_-	glutamine synthetase	NA	NA	NA	NA	NA
QBA14286.1|1522143_1523529_+	glutamine synthetase	NA	NA	NA	NA	NA
QBA14287.1|1523762_1525151_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14288.1|1525657_1526860_+	HlyD family secretion protein	NA	NA	NA	NA	NA
QBA14289.1|1526856_1528443_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
QBA14290.1|1528429_1529941_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
QBA14291.1|1530086_1531334_+	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.3	1.2e-24
QBA14292.1|1531647_1532478_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
QBA16764.1|1532633_1533044_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16765.1|1533298_1534663_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
QBA14293.1|1534814_1535816_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
QBA14294.1|1535831_1537112_-	DUF4105 domain-containing protein	NA	NA	NA	NA	NA
QBA14295.1|1537108_1537987_-	CBS domain-containing protein	NA	NA	NA	NA	NA
QBA14296.1|1538081_1538600_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14297.1|1538599_1539085_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
QBA14298.1|1539139_1539802_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14299.1|1540213_1541200_-	PhoH family protein	NA	W8D063	Erwinia_phage	47.7	2.5e-46
QBA14300.1|1541623_1543078_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
>prophage 11
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	1550289	1677740	4982118	protease,transposase,tRNA	Ralstonia_phage(21.74%)	105	NA	NA
QBA14305.1|1550289_1550730_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	46.2	9.3e-25
QBA14306.1|1550762_1551089_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14307.1|1551299_1551716_-	DUF3301 domain-containing protein	NA	NA	NA	NA	NA
QBA16766.1|1556208_1557174_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16767.1|1557754_1558939_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.4	1.0e-41
QBA16768.1|1559711_1559900_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
QBA14308.1|1560384_1560663_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
QBA14309.1|1560650_1560941_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QBA16769.1|1561542_1561722_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14310.1|1561944_1562079_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14311.1|1562585_1562987_-	histone-like nucleoid-structuring protein	NA	NA	NA	NA	NA
QBA14312.1|1563400_1563751_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14313.1|1563614_1564004_+	ATP-dependent DNA ligase	NA	NA	NA	NA	NA
QBA14314.1|1564079_1565171_-	ribonuclease D	NA	NA	NA	NA	NA
QBA14315.1|1565442_1567278_+	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	33.1	5.6e-23
QBA14316.1|1567594_1568341_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14317.1|1568558_1569821_+	virulence factor	NA	NA	NA	NA	NA
QBA14318.1|1570116_1571454_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	36.2	1.3e-37
QBA14319.1|1571537_1572300_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14320.1|1572415_1573483_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
QBA14321.1|1573507_1574995_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
QBA14322.1|1574991_1575492_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
QBA14323.1|1575544_1577278_+	N-acetylmuramoyl-L-alanine amidase	NA	A6XML1	Bacillus_virus	28.4	4.1e-15
QBA14324.1|1577415_1579293_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	35.2	1.4e-85
QBA14325.1|1579292_1580234_+	DUF1684 domain-containing protein	NA	NA	NA	NA	NA
QBA14326.1|1580267_1581239_+	TraB/GumN family protein	NA	NA	NA	NA	NA
QBA14327.1|1581412_1581988_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
QBA14328.1|1582147_1582888_-	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
QBA14329.1|1582975_1583875_-|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
QBA14330.1|1583972_1584851_+|protease	protease HtpX	protease	NA	NA	NA	NA
QBA14331.1|1584950_1587020_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QBA14332.1|1587243_1588425_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
QBA14333.1|1588421_1588970_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14334.1|1589040_1589526_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
QBA14335.1|1589795_1590005_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	62.3	2.8e-16
QBA14336.1|1590175_1590874_+	glutathione S-transferase	NA	NA	NA	NA	NA
QBA16770.1|1591074_1591950_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBA14337.1|1592233_1593790_+	YdiU family protein	NA	NA	NA	NA	NA
QBA14338.1|1593887_1594448_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.2	1.6e-29
QBA14339.1|1594550_1595927_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	31.4	1.6e-54
QBA14340.1|1596016_1597912_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.8	1.4e-48
QBA14341.1|1598360_1598786_-	barnase inhibitor	NA	NA	NA	NA	NA
QBA14342.1|1598782_1599223_-	ribonuclease	NA	NA	NA	NA	NA
QBA14343.1|1599477_1600089_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	69.8	1.1e-79
QBA14344.1|1600341_1601175_-	inositol monophosphatase	NA	NA	NA	NA	NA
QBA14345.1|1601293_1602058_+	RNA methyltransferase	NA	NA	NA	NA	NA
QBA16771.1|1602118_1603039_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBA14346.1|1603035_1605153_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
QBA14347.1|1605371_1606400_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA	NA
QBA14348.1|1606501_1607068_+	elongation factor P	NA	NA	NA	NA	NA
QBA16772.1|1607226_1608063_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14349.1|1608070_1609420_+	TRZ/ATZ family hydrolase	NA	NA	NA	NA	NA
QBA14350.1|1609450_1610170_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
QBA14351.1|1610243_1610948_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
QBA14352.1|1610976_1611666_+	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
QBA14353.1|1611882_1613553_-	glycoside hydrolase family 28 protein	NA	NA	NA	NA	NA
QBA14354.1|1614834_1615074_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14355.1|1615141_1616323_-	putative acyl-CoA thioester hydrolase	NA	NA	NA	NA	NA
QBA14356.1|1616682_1617999_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14357.1|1618198_1619167_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA14358.1|1619303_1620623_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14359.1|1621132_1622101_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
QBA14360.1|1622866_1623130_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14361.1|1623155_1623919_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14362.1|1624817_1625717_-	M23 family peptidase	NA	A0A075BS18	Microcystis_phage	41.2	2.6e-13
QBA14363.1|1625656_1627006_-	dihydroorotase	NA	NA	NA	NA	NA
QBA14364.1|1627002_1627284_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA	NA
QBA14365.1|1627374_1628415_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
QBA14366.1|1628557_1629619_+	peptidase S41	NA	NA	NA	NA	NA
QBA14367.1|1629686_1630937_-	MFS transporter	NA	NA	NA	NA	NA
QBA14368.1|1630933_1631371_-	SufE family protein	NA	NA	NA	NA	NA
QBA14369.1|1631868_1633299_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.5	1.1e-42
QBA14370.1|1633469_1633964_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14371.1|1634276_1635302_+	N-acetylornithine carbamoyltransferase	NA	NA	NA	NA	NA
QBA14372.1|1635373_1636615_+	argininosuccinate synthase	NA	NA	NA	NA	NA
QBA14373.1|1636855_1637308_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBA14374.1|1637313_1638414_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
QBA14375.1|1638453_1639797_+	acetylglutamate kinase	NA	NA	NA	NA	NA
QBA14376.1|1640409_1641360_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
QBA14377.1|1641483_1642779_+	argininosuccinate lyase	NA	NA	NA	NA	NA
QBA14378.1|1642775_1643144_+	cupin domain-containing protein	NA	NA	NA	NA	NA
QBA14379.1|1643143_1643404_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14380.1|1643417_1644572_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	37.8	1.2e-47
QBA14381.1|1644736_1645981_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.1	2.5e-91
QBA14382.1|1646348_1648262_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
QBA14383.1|1648242_1649508_-	MFS transporter	NA	NA	NA	NA	NA
QBA14384.1|1649728_1649839_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
QBA14385.1|1650595_1651564_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA14386.1|1651723_1652680_+|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
QBA16773.1|1653196_1654933_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	26.2	1.8e-15
QBA14387.1|1657001_1657970_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	9.6e-99
QBA14388.1|1658094_1659240_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16774.1|1659246_1660212_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14389.1|1660974_1661181_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14390.1|1661223_1661409_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14391.1|1661651_1661894_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14392.1|1661969_1662230_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14393.1|1662734_1663196_-	cytochrome c	NA	NA	NA	NA	NA
QBA14394.1|1663204_1663597_-	cytochrome c	NA	NA	NA	NA	NA
QBA14395.1|1668444_1670916_+	AcrB/AcrD/AcrF family protein	NA	S5VTK5	Leptospira_phage	21.9	4.4e-47
QBA14396.1|1670955_1671513_+	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
QBA14397.1|1671868_1672060_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14398.1|1673825_1674794_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	5.6e-99
QBA14399.1|1674943_1676263_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14400.1|1676420_1677740_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	1758018	1854229	4982118	protease,transposase,tRNA	uncultured_Mediterranean_phage(30.0%)	73	NA	NA
QBA14467.1|1758018_1759155_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QBA14468.1|1759151_1759610_-	NUDIX hydrolase	NA	NA	NA	NA	NA
QBA14469.1|1759860_1760181_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	1.0e-12
QBA14470.1|1760324_1762607_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	44.6	8.7e-175
QBA16778.1|1762887_1763106_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
QBA16779.1|1763186_1763939_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QBA14471.1|1765366_1766488_-	N-acetyltransferase	NA	NA	NA	NA	NA
QBA14472.1|1766545_1767514_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.5	5.9e-64
QBA14473.1|1767797_1770158_+	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	45.8	2.5e-84
QBA14474.1|1770320_1772249_+	DUF3857 domain-containing protein	NA	NA	NA	NA	NA
QBA16780.1|1772355_1772985_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
QBA14475.1|1773097_1777264_-	type III effector	NA	NA	NA	NA	NA
QBA16781.1|1777500_1778877_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.3	6.8e-74
QBA14476.1|1778908_1779235_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14477.1|1779231_1779639_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	49.1	5.7e-21
QBA14478.1|1779670_1780021_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14479.1|1780017_1781349_-	voltage-gated chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	35.2	1.5e-41
QBA14480.1|1781669_1782875_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
QBA14481.1|1783032_1785405_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
QBA14482.1|1785429_1786062_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBA14483.1|1786281_1786707_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	41.7	1.1e-19
QBA14484.1|1786725_1787931_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
QBA14485.1|1787941_1788730_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
QBA14486.1|1788726_1789587_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBA14487.1|1789657_1790296_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14488.1|1790292_1791513_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
QBA14489.1|1791523_1792921_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
QBA14490.1|1793235_1794456_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
QBA14491.1|1796330_1796570_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14492.1|1796837_1797806_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA14493.1|1800344_1801820_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.8	1.2e-76
QBA16782.1|1801797_1802763_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14494.1|1803039_1804197_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
QBA14495.1|1804360_1805812_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14496.1|1805846_1806903_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA14497.1|1806991_1808896_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.8	1.0e-112
QBA14498.1|1809136_1809757_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
QBA14499.1|1809753_1810260_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	41.1	4.8e-25
QBA16783.1|1810318_1810804_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16784.1|1810862_1811045_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14500.1|1811035_1811320_+	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	57.0	1.4e-18
QBA14501.1|1811316_1813110_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
QBA14502.1|1813116_1814148_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA14503.1|1814427_1815192_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16785.1|1815588_1816221_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
QBA16786.1|1816413_1816839_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA14504.1|1819111_1820233_+	phytase	NA	NA	NA	NA	NA
QBA14505.1|1823558_1824266_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14506.1|1824336_1824651_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14507.1|1824610_1826107_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
QBA14508.1|1826230_1826662_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QBA16787.1|1826855_1827926_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
QBA14509.1|1827995_1829141_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.2	2.2e-86
QBA14510.1|1829272_1829626_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
QBA14511.1|1829822_1831667_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
QBA14512.1|1831761_1832730_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	30.3	1.4e-28
QBA14513.1|1832810_1833173_-	recombinase	NA	NA	NA	NA	NA
QBA14514.1|1835860_1837180_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16788.1|1837429_1838614_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.4	1.0e-41
QBA14515.1|1838664_1839726_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14516.1|1839962_1841282_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14517.1|1841352_1841994_-	ribonuclease T	NA	NA	NA	NA	NA
QBA14518.1|1842271_1842679_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14519.1|1842811_1843522_-	phosphate transport system regulatory protein PhoU	NA	NA	NA	NA	NA
QBA14520.1|1843650_1844481_-	phosphate ABC transporter ATP-binding protein PstB	NA	W8CYL7	Bacillus_phage	32.6	5.5e-18
QBA14521.1|1844503_1845373_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
QBA14522.1|1845372_1846347_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
QBA14523.1|1846459_1847551_-	phosphate ABC transporter substrate-binding protein PstS	NA	E3SKK5	Synechococcus_phage	39.7	1.1e-47
QBA16789.1|1847738_1848812_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4SNR3	Cyanophage	38.4	5.0e-48
QBA14524.1|1848946_1850197_-	porin	NA	NA	NA	NA	NA
QBA14525.1|1850536_1850857_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14526.1|1851420_1852656_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA14527.1|1853260_1854229_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
>prophage 13
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	1974483	2041431	4982118	protease,transposase	Bacillus_phage(30.0%)	55	NA	NA
QBA14601.1|1974483_1975092_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
QBA14602.1|1975505_1975694_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16801.1|1975877_1976192_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBA14603.1|1976242_1977076_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14604.1|1977142_1977643_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16802.1|1977734_1978313_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14605.1|1978474_1978975_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
QBA14606.1|1980499_1981213_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14607.1|1981464_1981704_+	HTH domain-containing protein	NA	NA	NA	NA	NA
QBA14608.1|1983934_1984183_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14609.1|1984160_1984646_+	glutathione peroxidase	NA	A0A1S7DM81	Molluscum_contagiosum_virus	36.2	2.8e-14
QBA14610.1|1984796_1985576_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
QBA14611.1|1985764_1987645_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	38.0	2.3e-24
QBA14612.1|1987978_1989496_+	fumarate hydratase	NA	NA	NA	NA	NA
QBA14613.1|1989814_1990267_+	glutathione S-transferase	NA	NA	NA	NA	NA
QBA14614.1|1990695_1991829_-	phospholipase	NA	NA	NA	NA	NA
QBA14615.1|1994061_1995018_-|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
QBA16803.1|1995259_1995469_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14616.1|1996232_1997207_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	39.6	2.0e-19
QBA14617.1|1997373_1997607_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14618.1|1999501_2000265_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14619.1|2005428_2005809_-	response regulator	NA	NA	NA	NA	NA
QBA14620.1|2006824_2007028_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14621.1|2008654_2009314_-	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
QBA14622.1|2009369_2011286_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
QBA14623.1|2011388_2012108_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
QBA14624.1|2012104_2013112_-	glucokinase	NA	NA	NA	NA	NA
QBA14625.1|2013108_2014539_-	glucose-6-phosphate dehydrogenase	NA	A0A222YYZ2	Synechococcus_phage	34.5	2.2e-67
QBA14626.1|2014970_2016068_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	30.1	2.2e-22
QBA14627.1|2016196_2017069_-	folate-binding protein	NA	NA	NA	NA	NA
QBA16804.1|2017012_2017279_+	DUF1674 domain-containing protein	NA	NA	NA	NA	NA
QBA14628.1|2017338_2017734_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
QBA14629.1|2017730_2018117_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
QBA14630.1|2018151_2019942_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
QBA14631.1|2019945_2020155_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14632.1|2020171_2020954_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
QBA14633.1|2021064_2021313_+	succinate dehydrogenase assembly factor 2 family protein	NA	NA	NA	NA	NA
QBA14634.1|2021263_2021716_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14635.1|2021739_2022981_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
QBA14636.1|2022973_2023708_+	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	34.5	1.0e-31
QBA14637.1|2023708_2023891_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14638.1|2025101_2026067_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14639.1|2026320_2028729_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA	NA
QBA14640.1|2028757_2029420_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
QBA14641.1|2029423_2029888_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
QBA14642.1|2029884_2031654_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	28.0	9.4e-52
QBA14643.1|2031650_2032691_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
QBA16805.1|2032960_2033761_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
QBA16806.1|2033757_2034222_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
QBA14644.1|2034164_2035664_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14645.1|2035660_2037517_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
QBA14646.1|2037516_2038149_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
QBA14647.1|2038623_2039130_-	glyoxalase	NA	NA	NA	NA	NA
QBA14648.1|2039296_2040196_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.1	2.8e-36
QBA16807.1|2040246_2041431_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.8	5.0e-41
>prophage 14
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	2045817	2116511	4982118	transposase,tRNA	Xanthomonas_phage(53.85%)	51	NA	NA
QBA14650.1|2045817_2046783_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
QBA14651.1|2047664_2048627_-|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
QBA14652.1|2049390_2050347_+|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
QBA14653.1|2051599_2052271_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	38.9	5.2e-27
QBA14654.1|2052267_2052489_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
QBA14655.1|2052662_2056679_-	avirulence protein	NA	NA	NA	NA	NA
QBA14656.1|2056903_2057203_-	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	91.3	1.9e-45
QBA14657.1|2057206_2057401_-	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	82.3	3.9e-20
QBA14658.1|2057631_2058395_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14659.1|2062461_2062761_-	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	90.2	3.2e-45
QBA14660.1|2062764_2062959_-	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	82.3	3.9e-20
QBA14661.1|2067865_2069242_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
QBA14662.1|2069762_2070526_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14663.1|2070656_2071169_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14664.1|2071143_2071386_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14665.1|2071782_2071974_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14666.1|2072152_2073529_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
QBA14667.1|2073538_2073880_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14668.1|2074128_2074892_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14669.1|2075060_2075273_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14670.1|2075394_2075577_+	antitoxin	NA	NA	NA	NA	NA
QBA14671.1|2075701_2075938_-	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	93.2	1.0e-17
QBA14672.1|2076200_2076299_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14673.1|2076340_2077120_+	pectate lyase	NA	NA	NA	NA	NA
QBA14674.1|2081221_2081416_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	82.3	3.9e-20
QBA14675.1|2081419_2081719_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	91.3	1.9e-45
QBA14676.1|2086382_2087003_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA	NA
QBA14677.1|2086992_2087769_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
QBA14678.1|2087762_2088497_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
QBA14679.1|2088493_2089096_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
QBA14680.1|2089092_2090220_-	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase	NA	NA	NA	NA	NA
QBA14681.1|2090216_2091308_-	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
QBA14682.1|2091304_2092600_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
QBA14683.1|2092596_2093511_-	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
QBA14684.1|2093520_2093847_-	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBA14685.1|2094160_2094958_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14686.1|2095464_2096877_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	28.2	3.0e-40
QBA14687.1|2098141_2098885_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14688.1|2098987_2100292_-	threonine synthase	NA	NA	NA	NA	NA
QBA16808.1|2100453_2100768_+	EthD family reductase	NA	NA	NA	NA	NA
QBA14689.1|2103703_2104672_-	homoserine kinase	NA	NA	NA	NA	NA
QBA14690.1|2104668_2107176_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA	NA
QBA14691.1|2108479_2110012_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
QBA14692.1|2110600_2110885_+	DUF4190 domain-containing protein	NA	NA	NA	NA	NA
QBA14693.1|2110881_2111655_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBA14694.1|2111660_2112716_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
QBA14695.1|2112712_2113765_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
QBA16809.1|2113800_2114670_+	DMT family transporter	NA	NA	NA	NA	NA
QBA14696.1|2114705_2114864_+	pyridoxal phosphate biosynthetic protein	NA	NA	NA	NA	NA
QBA14697.1|2114860_2114995_+	aspartate racemase	NA	NA	NA	NA	NA
QBA16810.1|2115554_2116511_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.8	2.4e-41
>prophage 15
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	2217426	2347350	4982118	transposase,tRNA	Ralstonia_phage(24.0%)	93	NA	NA
QBA16821.1|2217426_2218392_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14772.1|2218412_2219216_-	amidohydrolase	NA	NA	NA	NA	NA
QBA14773.1|2219355_2220504_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
QBA14774.1|2220730_2221375_+	heme ABC exporter ATP-binding protein CcmA	NA	G3M9Y6	Bacillus_virus	25.9	3.1e-13
QBA14775.1|2221371_2222067_+	heme exporter protein CcmB	NA	NA	NA	NA	NA
QBA14776.1|2222161_2222914_+	heme ABC transporter permease	NA	NA	NA	NA	NA
QBA14777.1|2222910_2223081_+	heme exporter protein CcmD	NA	NA	NA	NA	NA
QBA14778.1|2223077_2223548_+	cytochrome c biogenesis protein CcmE	NA	NA	NA	NA	NA
QBA16822.1|2223716_2225654_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA	NA
QBA14779.1|2225687_2226248_+	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA	NA
QBA16823.1|2226265_2226676_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA	NA
QBA14780.1|2226669_2227689_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QBA14781.1|2227978_2229850_-	DUF4105 domain-containing protein	NA	NA	NA	NA	NA
QBA14782.1|2229846_2230146_-	DUF2388 domain-containing protein	NA	NA	NA	NA	NA
QBA14783.1|2230180_2231599_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
QBA14784.1|2231807_2233049_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.4	1.7e-103
QBA14785.1|2233204_2233792_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
QBA14786.1|2233928_2235410_+	amino acid permease	NA	NA	NA	NA	NA
QBA14787.1|2235486_2236917_+	amino acid permease	NA	NA	NA	NA	NA
QBA14788.1|2237005_2237683_+	methylthioribulose 1-phosphate dehydratase	NA	NA	NA	NA	NA
QBA14789.1|2237694_2238261_+	acireductone dioxygenase	NA	NA	NA	NA	NA
QBA14790.1|2238263_2238962_+	acireductone synthase	NA	NA	NA	NA	NA
QBA14791.1|2239288_2240374_+	peptidase C13	NA	NA	NA	NA	NA
QBA14792.1|2242205_2243525_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14793.1|2251123_2254930_+	avirulence protein	NA	NA	NA	NA	NA
QBA14794.1|2255198_2255393_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	82.3	3.9e-20
QBA14795.1|2255396_2255696_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	92.4	6.4e-46
QBA14796.1|2255835_2259435_+	Avirulence protein AvrBs3	NA	NA	NA	NA	NA
QBA16824.1|2259508_2259604_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14797.1|2260804_2261818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA14798.1|2261917_2262502_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
QBA14799.1|2262565_2263532_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	5.6e-99
QBA14800.1|2263745_2265065_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA14801.1|2265504_2266302_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14802.1|2266452_2267802_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.6	4.5e-94
QBA14803.1|2267808_2268573_+	energy transducer TonB	NA	NA	NA	NA	NA
QBA16825.1|2268933_2269401_+	energy transducer TonB	NA	NA	NA	NA	NA
QBA16826.1|2269587_2270689_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	39.2	1.2e-36
QBA14804.1|2271866_2272835_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA14805.1|2273866_2274832_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14806.1|2276459_2277428_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16827.1|2278221_2279187_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14807.1|2279412_2280210_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14808.1|2280490_2281459_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.5e-99
QBA14809.1|2281650_2282619_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA14810.1|2283479_2284679_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
QBA14811.1|2284827_2285010_+	cold shock domain-containing protein	NA	NA	NA	NA	NA
QBA14812.1|2285331_2286807_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	66.8	1.3e-99
QBA16828.1|2286861_2288046_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.8	5.0e-41
QBA16829.1|2288490_2289456_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA14813.1|2290808_2291777_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	1.9e-99
QBA14814.1|2291935_2292283_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14815.1|2292310_2293074_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14816.1|2293106_2293868_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
QBA14817.1|2294938_2295736_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14818.1|2295947_2298476_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	34.0	4.0e-64
QBA16830.1|2299042_2300488_-	acetylhydrolase	NA	M1HKG7	Acanthocystis_turfacea_Chlorella_virus	25.8	1.8e-08
QBA16831.1|2300441_2300666_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14819.1|2300859_2301000_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
QBA16832.1|2300999_2302148_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
QBA14820.1|2302269_2303265_+	methyltransferase domain-containing protein	NA	A0A2H4J145	uncultured_Caudovirales_phage	46.9	3.7e-05
QBA14821.1|2303261_2304401_+	5-methyltetrahydrofolate--homocysteine methyltransferase	NA	A0A140XBC7	Dickeya_phage	66.7	2.2e-17
QBA14822.1|2304543_2307297_+	methionine synthase	NA	NA	NA	NA	NA
QBA14823.1|2307683_2308889_-	AGE family epimerase/isomerase	NA	NA	NA	NA	NA
QBA14824.1|2309867_2311178_-	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
QBA16833.1|2311191_2312367_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBA14825.1|2312507_2313353_-	transporter	NA	NA	NA	NA	NA
QBA14826.1|2313686_2314439_-	DUF2058 family protein	NA	NA	NA	NA	NA
QBA14827.1|2314439_2314676_-	protein SlyX	NA	NA	NA	NA	NA
QBA14828.1|2314668_2316018_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	40.4	2.4e-79
QBA14829.1|2316043_2317009_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
QBA14830.1|2317100_2317658_-	glutathione peroxidase	NA	NA	NA	NA	NA
QBA14831.1|2317793_2318042_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14832.1|2318044_2318407_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QBA14833.1|2318403_2319279_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	3.3e-13
QBA14834.1|2319275_2320262_+	ABC transporter permease	NA	NA	NA	NA	NA
QBA14835.1|2320271_2321108_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14836.1|2321740_2322163_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16834.1|2322285_2323689_-	class II fumarate hydratase	NA	NA	NA	NA	NA
QBA14837.1|2325140_2325904_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA14838.1|2328927_2330295_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	48.6	3.3e-113
QBA16835.1|2331315_2331579_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
QBA14839.1|2331916_2333416_+	cupin domain-containing protein	NA	NA	NA	NA	NA
QBA14840.1|2333412_2334345_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBA14841.1|2334525_2337354_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
QBA14842.1|2337396_2338599_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
QBA14843.1|2338840_2340277_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.1	1.3e-38
QBA14844.1|2340475_2341069_+	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	27.5	3.5e-11
QBA16836.1|2341336_2341930_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	41.2	4.8e-16
QBA14845.1|2341926_2343696_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	30.7	8.0e-59
QBA14846.1|2344034_2344640_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA14847.1|2344769_2345696_+	multidrug transporter	NA	NA	NA	NA	NA
QBA14848.1|2346030_2347350_+|transposase	IS701-like element ISXo15 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	2402178	2456576	4982118	coat,protease,transposase	Acidithiobacillus_phage(22.22%)	42	NA	NA
QBA14886.1|2402178_2403213_+|coat	spore coat U domain-containing protein	coat	NA	NA	NA	NA
QBA14887.1|2403259_2403592_+	hypothetical protein	NA	NA	NA	NA	NA
QBA14888.1|2403594_2404320_+	molecular chaperone	NA	NA	NA	NA	NA
QBA14889.1|2404695_2405499_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
QBA14890.1|2405668_2406547_+	elongation factor Ts	NA	NA	NA	NA	NA
QBA14891.1|2406674_2407052_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
QBA14892.1|2407108_2407831_+	UMP kinase	NA	NA	NA	NA	NA
QBA14893.1|2408011_2408569_+	ribosome recycling factor	NA	NA	NA	NA	NA
QBA14894.1|2408586_2409348_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	32.6	3.6e-16
QBA14895.1|2409344_2410172_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
QBA14896.1|2410174_2411365_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
QBA14897.1|2411391_2412738_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
QBA14898.1|2412734_2415188_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
QBA14899.1|2415587_2416601_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
QBA14900.1|2416597_2417059_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
QBA14901.1|2417082_2417874_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
QBA16840.1|2417912_2419169_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
QBA14902.1|2419165_2419906_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	38.0	1.6e-24
QBA14903.1|2420363_2423954_+	DNA polymerase III subunit alpha	NA	A0A291AVA6	Streptomyces_phage	36.6	4.4e-181
QBA14904.1|2424129_2425089_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
QBA14905.1|2425928_2428109_+	ligand-gated channel	NA	NA	NA	NA	NA
QBA14906.1|2428108_2428846_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.6	3.5e-08
QBA14907.1|2428842_2430255_+	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
QBA14908.1|2430191_2431535_+	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
QBA14909.1|2432356_2432623_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16841.1|2432700_2433147_-	CopD family protein	NA	NA	NA	NA	NA
QBA14910.1|2433220_2433823_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QBA16842.1|2433990_2435307_+	polyhydroxyalkanoate depolymerase	NA	NA	NA	NA	NA
QBA14911.1|2435779_2436343_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16843.1|2440031_2440202_+	adenylyl-sulfate kinase	NA	NA	NA	NA	NA
QBA14912.1|2440999_2441215_-	hypothetical protein	NA	NA	NA	NA	NA
QBA14913.1|2441429_2442905_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	67.5	2.2e-102
QBA14914.1|2442947_2443343_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
QBA16844.1|2443382_2444759_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	2.0e-78
QBA16845.1|2446385_2447060_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	24.5	1.9e-08
QBA14915.1|2447064_2447841_+	VUT family protein	NA	R4TNY5	Halovirus	27.2	1.9e-09
QBA14916.1|2448261_2450199_+	DUF885 family protein	NA	NA	NA	NA	NA
QBA14917.1|2450380_2451358_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
QBA14918.1|2451354_2452752_-	S-methylmethionine permease	NA	NA	NA	NA	NA
QBA14919.1|2453021_2454080_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA14920.1|2454843_2455293_+	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
QBA14921.1|2455607_2456576_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	9.6e-99
>prophage 17
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	2643998	2709827	4982118	transposase,tRNA	uncultured_Caudovirales_phage(11.11%)	41	NA	NA
QBA15058.1|2643998_2645234_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA15059.1|2645733_2646837_+	exo-alpha-sialidase	NA	NA	NA	NA	NA
QBA15060.1|2646978_2648937_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15061.1|2648961_2649693_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
QBA15062.1|2649689_2650754_-	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	NA	NA	NA	NA	NA
QBA16855.1|2655375_2656458_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA15063.1|2656469_2657093_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QBA15064.1|2657343_2657820_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
QBA15065.1|2657853_2659056_-	chemotaxis protein	NA	NA	NA	NA	NA
QBA15066.1|2666104_2668141_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.1	2.1e-23
QBA15067.1|2668180_2668711_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
QBA15068.1|2668710_2669073_-	response regulator	NA	A0A220YL79	Alteromonas_virus	26.8	9.0e-10
QBA16856.1|2669090_2669492_-	response regulator	NA	NA	NA	NA	NA
QBA15069.1|2669741_2670692_+	glutathione synthase	NA	NA	NA	NA	NA
QBA15070.1|2670688_2671564_+	energy transducer TonB	NA	NA	NA	NA	NA
QBA15071.1|2671856_2672771_-	ADP-ribosylglycohydrolase family protein	NA	A0A1S6UB21	Serratia_phage	48.5	7.2e-64
QBA15072.1|2672767_2673487_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
QBA15073.1|2673500_2675528_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	33.2	4.6e-95
QBA15074.1|2675727_2676252_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15075.1|2676265_2678710_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
QBA15076.1|2678951_2681054_+	glycosyltransferase	NA	NA	NA	NA	NA
QBA16857.1|2681386_2682829_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15077.1|2683097_2685284_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
QBA15078.1|2685573_2685654_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA	NA
QBA15079.1|2685737_2686637_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA	NA
QBA15080.1|2686633_2687386_+	pyrroloquinoline-quinone synthase	NA	NA	NA	NA	NA
QBA15081.1|2687382_2687661_+	pyrroloquinoline quinone biosynthesis protein PqqD	NA	NA	NA	NA	NA
QBA15082.1|2687657_2688776_+	pyrroloquinoline quinone biosynthesis protein PqqE	NA	NA	NA	NA	NA
QBA15083.1|2688838_2689351_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15084.1|2689661_2690425_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15085.1|2690595_2692110_+	PhoPQ-regulated protein	NA	NA	NA	NA	NA
QBA15086.1|2693551_2696194_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15087.1|2696414_2700536_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SDF7	Indivirus	28.5	5.6e-47
QBA15088.1|2700637_2701183_+	DNA starvation/stationary phase protection protein	NA	A0A2H4N7L5	Lake_Baikal_phage	32.4	1.5e-16
QBA15089.1|2701397_2701625_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15090.1|2701737_2703534_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	2.6e-81
QBA15091.1|2703672_2704170_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15092.1|2705281_2705956_-	7-cyano-7-deazaguanine synthase	NA	A0A088F6S9	Vibrio_phage	34.7	6.4e-25
QBA15093.1|2706334_2707711_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	47.0	1.1e-58
QBA15094.1|2707777_2708540_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15095.1|2708591_2709827_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	2775921	2924220	4982118	transposase,tRNA	Ralstonia_phage(24.0%)	113	NA	NA
QBA15132.1|2775921_2778753_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SGW1	Hokovirus	22.2	4.1e-41
QBA15133.1|2778759_2779776_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
QBA15134.1|2779974_2781579_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
QBA15135.1|2781695_2781965_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
QBA15136.1|2782056_2783109_-	GTPase ObgE	NA	NA	NA	NA	NA
QBA15137.1|2783341_2783602_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
QBA15138.1|2783614_2783935_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
QBA15139.1|2784227_2787194_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.8	3.3e-307
QBA15140.1|2787190_2787598_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
QBA15141.1|2787711_2788176_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
QBA15142.1|2788199_2788970_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
QBA15143.1|2789040_2789946_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
QBA15144.1|2790173_2790677_+	pathogenicity-like protein	NA	NA	NA	NA	NA
QBA15145.1|2790788_2791532_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
QBA16861.1|2791786_2792242_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15146.1|2792386_2793185_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15147.1|2793227_2793809_-	calcium-binding protein	NA	NA	NA	NA	NA
QBA15148.1|2793869_2794784_+	arginyltransferase	NA	NA	NA	NA	NA
QBA15149.1|2794737_2796069_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
QBA15150.1|2796373_2797975_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15151.1|2798420_2799497_+	DUF4432 family protein	NA	NA	NA	NA	NA
QBA15152.1|2799592_2800066_-	DUF3574 domain-containing protein	NA	NA	NA	NA	NA
QBA15153.1|2800301_2802737_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	22.5	2.6e-12
QBA15154.1|2804092_2804815_+	trehalose-phosphatase	NA	NA	NA	NA	NA
QBA15155.1|2804859_2806638_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA	NA
QBA15156.1|2806634_2808002_+	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA	NA
QBA15157.1|2808226_2808640_-	thiol-disulfide oxidoreductase DCC family protein	NA	NA	NA	NA	NA
QBA16862.1|2808626_2809133_-	DUF4166 domain-containing protein	NA	NA	NA	NA	NA
QBA15158.1|2809153_2809960_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
QBA15159.1|2809967_2810963_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
QBA15160.1|2811083_2811965_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
QBA15161.1|2812122_2813781_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	38.0	1.2e-93
QBA15162.1|2814209_2814506_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15163.1|2814825_2815701_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA	NA
QBA15164.1|2815725_2816895_-	succinyl-CoA ligase subunit beta	NA	NA	NA	NA	NA
QBA15165.1|2817128_2818742_+	sensor histidine kinase	NA	NA	NA	NA	NA
QBA15166.1|2819072_2820464_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
QBA15167.1|2820536_2820743_+	DUF2559 family protein	NA	NA	NA	NA	NA
QBA15168.1|2821322_2823056_-	type IV-A pilus assembly ATPase PilB	NA	NA	NA	NA	NA
QBA15169.1|2823090_2824617_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15170.1|2824586_2825246_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15171.1|2825226_2826816_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15172.1|2826950_2827376_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
QBA16863.1|2827730_2828990_+	type II secretion system F family protein	NA	NA	NA	NA	NA
QBA15173.1|2828996_2829860_+	prepilin peptidase	NA	NA	NA	NA	NA
QBA15174.1|2829873_2830482_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
QBA15175.1|2830552_2831872_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA15176.1|2832419_2832839_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15177.1|2832717_2833674_-|transposase	IS30-like element IS1112a family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	1.1e-41
QBA15178.1|2834365_2835334_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA15179.1|2835503_2835872_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15180.1|2838161_2839130_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	59.7	1.8e-97
QBA15181.1|2845456_2846776_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA15182.1|2846818_2847581_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15183.1|2847657_2849490_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.3	1.2e-30
QBA16864.1|2849621_2850245_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
QBA15184.1|2850276_2853333_-	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
QBA15185.1|2853329_2854433_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBA15186.1|2854458_2855295_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
QBA16865.1|2855314_2856784_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
QBA16866.1|2856889_2857579_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	28.3	3.6e-07
QBA15187.1|2857575_2858769_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	25.3	4.0e-22
QBA15188.1|2858827_2860093_-	cation:proton antiporter	NA	NA	NA	NA	NA
QBA15189.1|2860239_2861916_-	serine hydrolase	NA	NA	NA	NA	NA
QBA15190.1|2861857_2862358_-	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
QBA15191.1|2865277_2866000_-	pseudouridine synthase	NA	NA	NA	NA	NA
QBA15192.1|2866149_2868546_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	30.2	3.8e-11
QBA15193.1|2868809_2870714_-	ATP-dependent RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.7	2.5e-58
QBA15194.1|2870712_2870931_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16867.1|2871388_2872048_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15195.1|2872076_2872319_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
QBA15196.1|2872667_2873069_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15197.1|2873094_2873628_-	DUF4019 domain-containing protein	NA	NA	NA	NA	NA
QBA15198.1|2874030_2874285_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15199.1|2875744_2877208_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
QBA15200.1|2877204_2877750_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A1S5V092	Saudi_moumouvirus	51.9	4.1e-14
QBA15201.1|2878100_2879069_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA15202.1|2882116_2883157_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
QBA15203.1|2883289_2883472_-	30S ribosomal protein THX	NA	NA	NA	NA	NA
QBA16868.1|2883771_2884182_-	MerC domain-containing protein	NA	NA	NA	NA	NA
QBA15204.1|2886852_2889234_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15205.1|2890483_2890894_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBA15206.1|2890992_2891718_-	OmpA family protein	NA	G3M9Z0	Bacillus_virus	33.9	1.4e-09
QBA16869.1|2891727_2891907_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15207.1|2892134_2893589_-	deoxyribodipyrimidine photo-lyase	NA	A0A1V0S949	Catovirus	31.7	5.7e-47
QBA15208.1|2893655_2895086_-	replicative DNA helicase	NA	O80281	Escherichia_phage	53.4	8.5e-120
QBA15209.1|2895307_2895862_-	NADPH-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	35.3	1.1e-19
QBA15210.1|2896078_2898019_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1B1ISV2	uncultured_Mediterranean_phage	30.5	4.4e-26
QBA15211.1|2898194_2898833_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
QBA16870.1|2901066_2902230_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
QBA15212.1|2902387_2903179_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
QBA15213.1|2903324_2903540_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15214.1|2903539_2904307_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
QBA15215.1|2904368_2905199_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
QBA15216.1|2905271_2905700_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15217.1|2905831_2906311_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
QBA15218.1|2906561_2906777_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	59.7	6.5e-16
QBA15219.1|2907004_2907490_+	DUF456 domain-containing protein	NA	NA	NA	NA	NA
QBA15220.1|2909051_2909255_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15221.1|2910032_2910491_-	cupin domain-containing protein	NA	NA	NA	NA	NA
QBA15222.1|2910896_2911403_-	transcriptional repressor	NA	NA	NA	NA	NA
QBA15223.1|2911416_2912820_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
QBA15224.1|2912888_2913992_-	DUF3616 domain-containing protein	NA	NA	NA	NA	NA
QBA16871.1|2914013_2914745_-	nitrilase	NA	NA	NA	NA	NA
QBA15225.1|2914818_2915775_+|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
QBA15226.1|2916073_2916661_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
QBA15227.1|2916891_2917704_+	peptidase C1	NA	NA	NA	NA	NA
QBA15228.1|2917836_2918805_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA15229.1|2918894_2920058_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.2	2.6e-98
QBA15230.1|2920225_2920609_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16872.1|2921124_2921937_+	peptidase C1	NA	NA	NA	NA	NA
QBA15231.1|2921997_2923056_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	42.6	4.1e-71
QBA15232.1|2923050_2924220_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	60.5	1.1e-96
>prophage 19
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3011196	3109258	4982118	transposase,tRNA	Acinetobacter_phage(36.36%)	60	NA	NA
QBA15300.1|3011196_3012573_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
QBA16878.1|3012921_3013887_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA15301.1|3015151_3016306_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
QBA15302.1|3016305_3017628_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA	NA
QBA16879.1|3018711_3019572_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
QBA15303.1|3019606_3020206_+	LysE family translocator	NA	NA	NA	NA	NA
QBA15304.1|3020272_3021208_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
QBA16880.1|3021273_3022626_+	glutamine synthetase	NA	NA	NA	NA	NA
QBA16881.1|3022717_3023902_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.8	5.0e-41
QBA15305.1|3026691_3029016_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15306.1|3029040_3030909_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	21.0	3.3e-15
QBA15307.1|3031121_3032552_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QBA15308.1|3033314_3034106_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QBA15309.1|3036714_3037533_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBA15310.1|3038641_3039517_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.4	2.0e-15
QBA15311.1|3039540_3039966_-	YcxB family protein	NA	NA	NA	NA	NA
QBA15312.1|3040237_3042154_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	30.5	1.2e-65
QBA15313.1|3042328_3044716_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	35.7	7.1e-10
QBA15314.1|3045179_3045620_+	VOC family protein	NA	NA	NA	NA	NA
QBA15315.1|3045893_3048281_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	32.9	9.2e-10
QBA15316.1|3048613_3051013_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	33.3	4.9e-11
QBA15317.1|3052156_3053866_+	Kef family K(+) transporter	NA	NA	NA	NA	NA
QBA15318.1|3055274_3056036_+	4-hydroxy-2-oxovalerate aldolase	NA	NA	NA	NA	NA
QBA15319.1|3056036_3058178_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
QBA15320.1|3058413_3059640_+	siderophore biosynthesis protein PvsA	NA	NA	NA	NA	NA
QBA16882.1|3059636_3061439_+	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
QBA15321.1|3062608_3064378_+	iron transporter	NA	NA	NA	NA	NA
QBA15322.1|3064374_3065571_+	type III PLP-dependent enzyme	NA	NA	NA	NA	NA
QBA16883.1|3065745_3066480_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA	NA
QBA15323.1|3066476_3067067_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
QBA15324.1|3067063_3068110_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
QBA15325.1|3068106_3068628_-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
QBA15326.1|3069141_3069753_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
QBA16884.1|3069749_3070349_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15327.1|3070348_3070942_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15328.1|3072714_3074592_-	TonB-dependent vitamin B12 receptor	NA	A0A0P0I887	Acinetobacter_phage	29.5	4.9e-06
QBA15329.1|3077655_3077805_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15330.1|3077835_3078747_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15331.1|3078871_3081457_-	ATP-dependent chaperone ClpB	NA	A0A1C3S747	Escherichia_phage	35.4	3.8e-126
QBA15332.1|3081902_3082208_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
QBA15333.1|3082237_3082513_+	glutathione transferase	NA	NA	NA	NA	NA
QBA15334.1|3083838_3085053_-|transposase	IS4-like element ISXo14 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	33.4	1.8e-54
QBA16885.1|3085472_3085880_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
QBA16886.1|3086220_3087711_+	MATE family efflux transporter	NA	NA	NA	NA	NA
QBA15335.1|3088336_3088744_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
QBA15336.1|3088867_3089647_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
QBA15337.1|3089712_3090225_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QBA15338.1|3090268_3090526_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
QBA15339.1|3090635_3091433_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15340.1|3091423_3092494_-	nitronate monooxygenase	NA	NA	NA	NA	NA
QBA16887.1|3094066_3095443_-	signal recognition particle protein	NA	NA	NA	NA	NA
QBA15341.1|3095744_3096710_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA15342.1|3096918_3097710_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
QBA15343.1|3097997_3099047_-	galactose mutarotase	NA	NA	NA	NA	NA
QBA15344.1|3099294_3100878_+	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
QBA15345.1|3100864_3101053_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15346.1|3103030_3103936_-	HutD family protein	NA	NA	NA	NA	NA
QBA15347.1|3105856_3106189_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
QBA15348.1|3106387_3107881_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
QBA15349.1|3108200_3109258_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3138415	3216613	4982118	protease,transposase	Xanthomonas_phage(57.14%)	50	NA	NA
QBA15381.1|3138415_3139651_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
QBA15382.1|3140072_3141461_-	amino acid permease	NA	NA	NA	NA	NA
QBA15383.1|3142216_3143158_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
QBA15384.1|3143471_3144236_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
QBA15385.1|3144428_3145811_+	amino acid permease	NA	NA	NA	NA	NA
QBA15386.1|3146265_3147663_+|protease	serine protease	protease	NA	NA	NA	NA
QBA15387.1|3147909_3148095_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15388.1|3148225_3148624_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15389.1|3148768_3149773_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QBA15390.1|3149810_3151328_-	tryptophan 7-halogenase	NA	A0A1D7SEI2	Cyanophage	32.3	8.1e-52
QBA15391.1|3151368_3152415_-	cupin-like domain-containing protein	NA	NA	NA	NA	NA
QBA16892.1|3152425_3153178_-	peptide ABC transporter permease	NA	NA	NA	NA	NA
QBA15392.1|3153253_3153490_+	transcriptional regulator	NA	NA	NA	NA	NA
QBA15393.1|3153509_3156656_-	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15394.1|3157714_3159721_-	M1 family peptidase	NA	NA	NA	NA	NA
QBA15395.1|3159940_3160387_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
QBA15396.1|3162378_3163545_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	42.1	5.8e-74
QBA15397.1|3163546_3164119_-	DUF1190 domain-containing protein	NA	A0A191ZBZ0	Erwinia_phage	27.7	1.1e-09
QBA15398.1|3164131_3164536_-	DUF350 domain-containing protein	NA	NA	NA	NA	NA
QBA15399.1|3164573_3165245_-	DUF2491 family protein	NA	NA	NA	NA	NA
QBA15400.1|3165247_3166330_-	potassium channel protein	NA	NA	NA	NA	NA
QBA15401.1|3166355_3167129_-	PspA/IM30 family protein	NA	NA	NA	NA	NA
QBA15402.1|3167141_3167558_-	DUF2170 family protein	NA	NA	NA	NA	NA
QBA15403.1|3167738_3168338_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
QBA15404.1|3168504_3169047_+	shikimate kinase	NA	NA	NA	NA	NA
QBA16893.1|3169043_3170156_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
QBA15405.1|3170457_3170709_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15406.1|3170723_3171788_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
QBA15407.1|3173259_3176976_+	avirulence protein	NA	NA	NA	NA	NA
QBA15408.1|3177244_3177439_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	94.1	3.9e-20
QBA15409.1|3177442_3177742_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	92.4	6.4e-46
QBA15410.1|3182550_3182745_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	80.6	2.5e-19
QBA15411.1|3182748_3183048_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	91.3	9.3e-45
QBA15412.1|3186850_3187045_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	80.6	2.5e-19
QBA15413.1|3187048_3187348_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	91.3	9.3e-45
QBA15414.1|3191354_3191549_+	hypothetical protein	NA	A0A1W6DXV7	Xanthomonas_phage	80.6	2.5e-19
QBA15415.1|3191552_3191852_+	hypothetical protein	NA	A0A1W6DY99	Xanthomonas_phage	91.3	1.9e-45
QBA15416.1|3195256_3195478_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
QBA15417.1|3195474_3196146_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	38.9	5.2e-27
QBA15418.1|3196167_3197037_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.2	1.4e-29
QBA15419.1|3197533_3198988_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15420.1|3200998_3202288_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
QBA15421.1|3205534_3205984_-	azurin	NA	NA	NA	NA	NA
QBA15422.1|3207426_3207930_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15423.1|3207954_3208380_-	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA	NA
QBA15424.1|3208376_3209960_-	flavin monoamine oxidase family protein	NA	NA	NA	NA	NA
QBA15425.1|3211520_3212138_+	hydrolase	NA	NA	NA	NA	NA
QBA15426.1|3212382_3213609_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.1	4.0e-17
QBA15427.1|3213681_3214554_+	ion transporter	NA	NA	NA	NA	NA
QBA15428.1|3215814_3216613_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3219765	3287742	4982118	transposase	Ralstonia_phage(12.5%)	55	NA	NA
QBA15431.1|3219765_3220749_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	60.8	2.2e-98
QBA16894.1|3221182_3222070_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	33.1	2.4e-32
QBA16895.1|3222282_3222672_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15432.1|3222751_3223429_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	27.4	7.4e-05
QBA15433.1|3223891_3225217_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	25.9	9.0e-07
QBA16896.1|3225326_3226292_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA15434.1|3226380_3227144_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16897.1|3227531_3228533_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
QBA15435.1|3228888_3229185_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16899.1|3232402_3233176_+	endonuclease	NA	NA	NA	NA	NA
QBA16898.1|3233189_3234020_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QBA15436.1|3234090_3234867_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBA15437.1|3234877_3235570_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
QBA15438.1|3235569_3236184_+	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	2.1e-19
QBA15439.1|3236526_3237111_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15440.1|3237107_3238424_-	TonB family protein	NA	NA	NA	NA	NA
QBA15441.1|3238413_3238779_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
QBA16900.1|3238878_3240240_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
QBA15442.1|3240257_3240956_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	35.0	9.8e-29
QBA15443.1|3241622_3242462_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBA15444.1|3242461_3243136_-	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
QBA15445.1|3243132_3244632_-	long-chain acyl-CoA synthetase	NA	NA	NA	NA	NA
QBA16901.1|3244628_3245276_-	thermostable hemolysin	NA	NA	NA	NA	NA
QBA15446.1|3247544_3248720_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15447.1|3248849_3251564_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15448.1|3251883_3252876_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
QBA15449.1|3252878_3253595_+	M23 family peptidase	NA	A0A0M5M794	Arthrobacter_phage	34.2	2.7e-05
QBA15450.1|3253608_3254163_-	outer membrane receptor protein	NA	NA	NA	NA	NA
QBA15451.1|3254413_3256414_-	transketolase	NA	NA	NA	NA	NA
QBA15452.1|3256633_3257914_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
QBA15453.1|3258111_3258429_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15454.1|3258724_3260482_-	protein BatD	NA	NA	NA	NA	NA
QBA15455.1|3260478_3262281_-	VWA domain-containing protein	NA	NA	NA	NA	NA
QBA15456.1|3262277_3263285_-	VWA domain-containing protein	NA	NA	NA	NA	NA
QBA15457.1|3263281_3263743_-	DUF4381 domain-containing protein	NA	NA	NA	NA	NA
QBA15458.1|3263745_3264708_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
QBA15459.1|3264728_3265748_-	MoxR family ATPase	NA	NA	NA	NA	NA
QBA15460.1|3266370_3267405_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA15461.1|3267475_3268711_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
QBA15462.1|3268853_3269651_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15463.1|3269722_3271672_-	type IV pilus secretin PilQ family protein	NA	NA	NA	NA	NA
QBA15464.1|3271691_3272225_-	fimbrial protein	NA	NA	NA	NA	NA
QBA15465.1|3272221_3272887_-	fimbrial protein	NA	NA	NA	NA	NA
QBA15466.1|3272883_3273642_-	fimbrial protein	NA	NA	NA	NA	NA
QBA15467.1|3273641_3274700_-	pilus assembly protein PilM	NA	NA	NA	NA	NA
QBA15468.1|3274822_3277345_+	penicillin-binding protein 1A	NA	NA	NA	NA	NA
QBA15469.1|3277654_3278305_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16902.1|3278681_3279971_-	citrate synthase	NA	NA	NA	NA	NA
QBA15470.1|3280184_3280427_-	50S ribosomal protein L31 type B	NA	NA	NA	NA	NA
QBA15471.1|3280498_3281437_-	nucleoside hydrolase	NA	NA	NA	NA	NA
QBA15472.1|3281562_3283716_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
QBA15473.1|3283736_3284117_-	RidA family protein	NA	NA	NA	NA	NA
QBA15474.1|3284196_3286368_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.8	2.8e-13
QBA15475.1|3286496_3286796_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
QBA15476.1|3286943_3287742_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3297194	3360594	4982118	transposase	Leptospira_phage(16.67%)	51	NA	NA
QBA15485.1|3297194_3297957_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15486.1|3298665_3300006_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
QBA16904.1|3300016_3300559_-	YecA family protein	NA	NA	NA	NA	NA
QBA16905.1|3300794_3301016_+	TIGR02449 family protein	NA	NA	NA	NA	NA
QBA15487.1|3301012_3301312_+	cell division protein ZapA	NA	NA	NA	NA	NA
QBA15488.1|3301920_3302511_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
QBA15489.1|3302507_3302978_+	EVE domain-containing protein	NA	NA	NA	NA	NA
QBA15490.1|3303069_3303717_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
QBA16906.1|3303867_3304317_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
QBA15491.1|3304466_3305348_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15492.1|3305397_3305637_-	rubredoxin	NA	NA	NA	NA	NA
QBA15493.1|3305660_3306284_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
QBA16907.1|3307713_3308816_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	2.5e-42
QBA15494.1|3309204_3309369_+	alpha-mannosidase	NA	NA	NA	NA	NA
QBA15495.1|3309544_3311854_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
QBA15496.1|3312051_3313425_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
QBA15497.1|3315208_3317854_+	response regulator	NA	B5LWN0	Feldmannia_species_virus	28.1	4.4e-13
QBA15498.1|3318169_3319519_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	36.3	1.5e-62
QBA15499.1|3319515_3320295_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBA15500.1|3320286_3321189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA15501.1|3321497_3322136_+	aldo/keto reductase	NA	NA	NA	NA	NA
QBA15502.1|3322132_3322987_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
QBA15503.1|3323187_3323826_-	DNA-binding response regulator	NA	NA	NA	NA	NA
QBA15504.1|3323865_3324915_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QBA15505.1|3324914_3326300_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.7	8.3e-11
QBA15506.1|3326292_3326994_-	DNA-binding response regulator	NA	NA	NA	NA	NA
QBA16908.1|3327249_3328443_+	porin	NA	NA	NA	NA	NA
QBA15507.1|3328670_3329999_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
QBA15508.1|3330110_3330851_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
QBA15509.1|3331091_3332123_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QBA15510.1|3332363_3333695_-	MFS transporter	NA	NA	NA	NA	NA
QBA15511.1|3333964_3336409_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15512.1|3336443_3338360_+	amylosucrase	NA	NA	NA	NA	NA
QBA15513.1|3338526_3339207_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
QBA15514.1|3339359_3340622_-	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA	NA
QBA15515.1|3340621_3341713_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
QBA15516.1|3341866_3343138_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
QBA15517.1|3343137_3343776_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
QBA15518.1|3344098_3344770_+	methyltransferase	NA	NA	NA	NA	NA
QBA15519.1|3345070_3345847_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
QBA15520.1|3345907_3346834_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
QBA15521.1|3347165_3347501_+	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
QBA15522.1|3347474_3348863_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA15523.1|3348944_3349295_+	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
QBA15524.1|3349762_3350731_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	5.6e-99
QBA15525.1|3351559_3352795_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA15526.1|3353783_3355385_+	rhamnogalacturonase B	NA	NA	NA	NA	NA
QBA16909.1|3356001_3356748_-	cellulase	NA	NA	NA	NA	NA
QBA15527.1|3357220_3357979_-	cellulase	NA	NA	NA	NA	NA
QBA15528.1|3358495_3359011_-	peptide deformylase	NA	NA	NA	NA	NA
QBA15529.1|3359217_3360594_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
>prophage 23
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3378498	3447694	4982118	protease,integrase,transposase	Ralstonia_phage(31.25%)	42	3372228:3372244	3415843:3415859
3372228:3372244	attL	TCGGGGGTTCGAATCCC	NA	NA	NA	NA
QBA16910.1|3378498_3379185_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	51.8	2.3e-54
QBA16911.1|3379283_3380249_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
QBA15548.1|3380331_3380889_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15549.1|3380950_3381214_-	PAAR domain-containing protein	NA	A4JWV5	Burkholderia_virus	43.4	7.5e-06
QBA15550.1|3381210_3382890_-	DUF2875 domain-containing protein	NA	NA	NA	NA	NA
QBA15551.1|3385632_3387837_-	DUF3274 domain-containing protein	NA	A0A077K801	Ralstonia_phage	29.7	5.9e-19
QBA15552.1|3388156_3389854_-	DUF2875 domain-containing protein	NA	NA	NA	NA	NA
QBA16912.1|3389850_3392001_-	DUF3274 domain-containing protein	NA	A0A077K801	Ralstonia_phage	28.2	2.0e-27
QBA15553.1|3392068_3394792_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	30.0	4.8e-71
QBA15554.1|3395187_3395388_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15555.1|3396279_3396816_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15556.1|3397734_3398439_+	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
QBA15557.1|3398874_3399609_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	40.4	8.7e-36
QBA15558.1|3399617_3400070_-	ribonuclease HI	NA	A0A1Q2U2R0	Vibrio_phage	55.4	2.8e-40
QBA15559.1|3400097_3400754_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15560.1|3400766_3401534_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
QBA15561.1|3401530_3402709_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
QBA15562.1|3403414_3405385_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
QBA15563.1|3406216_3406489_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	64.0	2.2e-21
QBA15564.1|3406702_3409174_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.2	1.7e-224
QBA15565.1|3409317_3410604_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.9	9.0e-137
QBA15566.1|3410728_3411355_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.4	1.0e-56
QBA15567.1|3411447_3412740_-	trigger factor	NA	NA	NA	NA	NA
QBA15568.1|3416057_3416819_+	hypothetical protein	NA	NA	NA	NA	NA
3415843:3415859	attR	GGGATTCGAACCCCCGA	NA	NA	NA	NA
QBA15569.1|3416962_3417970_-	isocitrate dehydrogenase	NA	NA	NA	NA	NA
QBA15570.1|3418233_3419199_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA15571.1|3419199_3419953_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15572.1|3421772_3422504_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	37.5	1.1e-06
QBA15573.1|3422536_3423299_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15574.1|3423293_3423536_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
QBA15575.1|3424084_3424546_+	cell wall hydrolase	NA	NA	NA	NA	NA
QBA15576.1|3424522_3424804_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15577.1|3424806_3425775_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA15578.1|3428443_3429206_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15579.1|3429274_3430852_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15580.1|3431425_3432394_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16913.1|3434341_3435265_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	33.1	1.3e-36
QBA15581.1|3436010_3437330_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA15582.1|3438312_3439548_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA16914.1|3443337_3444228_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15583.1|3444841_3446077_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA15584.1|3446591_3447694_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	1.6e-41
>prophage 24
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3470144	3537431	4982118	protease,transposase	Acinetobacter_phage(15.38%)	48	NA	NA
QBA15598.1|3470144_3471110_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA15599.1|3473385_3473868_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15600.1|3474064_3474601_+	inorganic pyrophosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	53.6	3.6e-47
QBA15601.1|3474747_3475863_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
QBA15602.1|3476477_3479447_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.9	8.7e-42
QBA15603.1|3479492_3480386_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QBA15604.1|3480496_3482848_-	biopolymer transporter Tol	NA	NA	NA	NA	NA
QBA15605.1|3483273_3485151_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
QBA15606.1|3486427_3487429_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
QBA15607.1|3487472_3489194_+	acetolactate synthase 2 catalytic subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	32.9	6.1e-64
QBA15608.1|3489177_3489435_+	acetolactate synthase	NA	NA	NA	NA	NA
QBA15609.1|3489510_3490635_+	threonine dehydratase	NA	NA	NA	NA	NA
QBA15610.1|3490631_3492194_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	24.4	4.3e-08
QBA15611.1|3492524_3493598_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
QBA15612.1|3494414_3495062_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
QBA15613.1|3495129_3496578_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
QBA16917.1|3496698_3497583_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA15614.1|3498642_3499104_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15615.1|3499373_3500027_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16918.1|3500155_3500812_+	protein-L-isoaspartate O-methyltransferase	NA	NA	NA	NA	NA
QBA15616.1|3500832_3502212_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15617.1|3502484_3503801_-	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
QBA15618.1|3503877_3504798_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase	NA	NA	NA	NA	NA
QBA15619.1|3505031_3506366_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
QBA15620.1|3506346_3507459_-	glycosyltransferase	NA	NA	NA	NA	NA
QBA15621.1|3507468_3507666_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
QBA15622.1|3507791_3508325_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16919.1|3509829_3511206_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.4	5.0e-77
QBA15623.1|3512291_3514964_-	M1 family peptidase	NA	A0A0P0IY26	Acinetobacter_phage	28.0	2.6e-77
QBA15624.1|3515289_3516582_-	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	37.5	8.4e-74
QBA15625.1|3516919_3517105_-	DUF2065 family protein	NA	NA	NA	NA	NA
QBA15626.1|3517398_3518262_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
QBA16920.1|3518261_3519389_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
QBA15627.1|3520018_3520405_-	response regulator	NA	W8CYM9	Bacillus_phage	31.8	9.6e-10
QBA15628.1|3520644_3521544_-	J domain-containing protein	NA	A0A2L0UZR4	Agrobacterium_phage	27.7	5.9e-18
QBA15629.1|3521954_3522431_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
QBA15630.1|3522593_3523076_+	peroxiredoxin	NA	A0A1D8KSL1	Synechococcus_phage	36.2	3.1e-21
QBA15631.1|3523118_3523679_+	bacterioferritin	NA	NA	NA	NA	NA
QBA15632.1|3523812_3524775_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	2.2e-42
QBA15633.1|3525119_3526439_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA15634.1|3526509_3527046_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15635.1|3527002_3527221_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15636.1|3527546_3528494_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.5	4.9e-07
QBA15637.1|3528668_3531656_-	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15638.1|3532635_3532818_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15639.1|3532927_3533926_-	nucleoside hydrolase	NA	NA	NA	NA	NA
QBA15640.1|3534004_3536221_-	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15641.1|3536462_3537431_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
>prophage 25
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3560485	3632052	4982118	transposase,tRNA	Acidithiobacillus_phage(11.11%)	47	NA	NA
QBA15662.1|3560485_3561451_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA15663.1|3561562_3563854_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA	NA
QBA15664.1|3563981_3564656_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
QBA15665.1|3564652_3566497_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
QBA15666.1|3566493_3567360_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
QBA15667.1|3567379_3568012_+	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
QBA15668.1|3568014_3569049_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
QBA15669.1|3569063_3569354_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
QBA15670.1|3577372_3578212_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
QBA15671.1|3578822_3579980_+	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA	NA
QBA15672.1|3580015_3582178_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA15673.1|3582553_3583129_+	nicotinamide riboside transporter PnuC	NA	NA	NA	NA	NA
QBA15674.1|3583234_3583963_+	UTRA domain-containing protein	NA	NA	NA	NA	NA
QBA15675.1|3584067_3585444_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
QBA15676.1|3585898_3586738_-	glycosyltransferase	NA	NA	NA	NA	NA
QBA15677.1|3586734_3589047_-	type II secretion system protein GspD	NA	A7BJX1	Enterobacteria_phage	23.5	5.2e-10
QBA15678.1|3589043_3589853_-	general secretion pathway protein GspN	NA	NA	NA	NA	NA
QBA15679.1|3589842_3590496_-	general secretion pathway protein GspM	NA	NA	NA	NA	NA
QBA15680.1|3590479_3591601_-	general secretion pathway protein GspL	NA	NA	NA	NA	NA
QBA15681.1|3591597_3592449_-	general secretion pathway protein GspK	NA	NA	NA	NA	NA
QBA15682.1|3592445_3593081_-	type II secretion system protein J	NA	NA	NA	NA	NA
QBA15683.1|3593077_3593494_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
QBA15684.1|3593490_3594000_-	type II secretion system protein GspH	NA	NA	NA	NA	NA
QBA16923.1|3594009_3594441_-	type II secretion system protein GspG	NA	NA	NA	NA	NA
QBA15685.1|3594708_3595926_-	type II secretion system F family protein	NA	NA	NA	NA	NA
QBA15686.1|3595925_3596105_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15687.1|3596101_3597841_-	type II secretion system protein GspE	NA	NA	NA	NA	NA
QBA16924.1|3598664_3599621_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	2.4e-41
QBA15688.1|3601119_3604917_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15689.1|3605373_3605637_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15690.1|3605894_3609947_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	56.9	7.5e-121
QBA15691.1|3610345_3611143_-	DsbC family protein	NA	NA	NA	NA	NA
QBA15692.1|3611598_3612570_-	site-specific tyrosine recombinase XerD	NA	G1JX48	Mycobacterium_phage	27.9	6.4e-18
QBA15693.1|3612996_3613464_+	RDD family protein	NA	NA	NA	NA	NA
QBA16925.1|3613878_3614985_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
QBA15694.1|3614981_3616064_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
QBA15695.1|3616171_3617644_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.2	6.2e-49
QBA15696.1|3617643_3617949_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15697.1|3617989_3618415_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
QBA15698.1|3618622_3621565_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	34.8	8.4e-130
QBA15699.1|3621572_3621875_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15700.1|3622501_3623602_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.7	1.6e-41
QBA15701.1|3623793_3624108_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
QBA15702.1|3624759_3625558_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15703.1|3627147_3628188_+	pectate lyase	NA	NA	NA	NA	NA
QBA16926.1|3628454_3630500_-	lytic murein transglycosylase	NA	A0A0H3V0Q1	Geobacillus_virus	36.7	8.2e-15
QBA15704.1|3630732_3632052_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3653074	3663700	4982118		Enterobacteria_phage(57.14%)	9	NA	NA
QBA15723.1|3653074_3654421_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.9	2.6e-33
QBA15724.1|3654466_3655870_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.6	2.5e-47
QBA15725.1|3655986_3656895_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	35.1	1.8e-27
QBA15726.1|3656891_3657449_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	47.5	2.3e-44
QBA15727.1|3657445_3658333_-	glucose-1-phosphate thymidylyltransferase	NA	I7I009	Enterobacteria_phage	58.2	2.2e-94
QBA16929.1|3658388_3659444_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.0	4.3e-84
QBA15728.1|3660414_3661356_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
QBA15729.1|3661578_3662397_+	ABC transporter permease	NA	NA	NA	NA	NA
QBA15730.1|3662386_3663700_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	3.8e-13
>prophage 27
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	3771834	3833215	4982118	integrase,transposase	Stenotrophomonas_phage(20.0%)	54	3764184:3764201	3840262:3840279
3764184:3764201	attL	CGGCATCCTGCCCGACCA	NA	NA	NA	NA
QBA15823.1|3771834_3772803_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16941.1|3773333_3773786_+	fasciclin domain-containing protein	NA	NA	NA	NA	NA
QBA15824.1|3774425_3775874_-	DUF4130 domain-containing protein	NA	NA	NA	NA	NA
QBA15825.1|3775880_3777125_-	putative DNA modification/repair radical SAM protein	NA	NA	NA	NA	NA
QBA15826.1|3777322_3778141_-	dioxygenase	NA	NA	NA	NA	NA
QBA15827.1|3778238_3778517_-	DoxX family membrane protein	NA	NA	NA	NA	NA
QBA15828.1|3778632_3779202_+	flavodoxin family protein	NA	NA	NA	NA	NA
QBA15829.1|3779341_3780337_+	aldo/keto reductase	NA	NA	NA	NA	NA
QBA15830.1|3780360_3780549_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15831.1|3780577_3781273_+	glycosyltransferase	NA	NA	NA	NA	NA
QBA16942.1|3781423_3783493_+	M13 family peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	26.9	8.4e-60
QBA15832.1|3783831_3784689_-	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
QBA16943.1|3785218_3785905_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15833.1|3786236_3787832_-	APC family permease	NA	NA	NA	NA	NA
QBA15834.1|3789311_3790643_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.0	6.1e-19
QBA15835.1|3790917_3792132_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
QBA16944.1|3792164_3792419_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15836.1|3794436_3794817_+	response regulator	NA	NA	NA	NA	NA
QBA15837.1|3794785_3795052_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15838.1|3795051_3796332_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
QBA15839.1|3796478_3796694_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15840.1|3797448_3798858_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
QBA15841.1|3798848_3799865_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
QBA15842.1|3799949_3800747_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA15843.1|3802391_3802706_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
QBA15844.1|3802715_3802937_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15845.1|3803357_3803570_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15846.1|3803896_3804646_+	DUF3348 domain-containing protein	NA	NA	NA	NA	NA
QBA15847.1|3804656_3807314_+	DUF802 domain-containing protein	NA	NA	NA	NA	NA
QBA15848.1|3807310_3807985_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15849.1|3807981_3808647_+	DUF2894 domain-containing protein	NA	NA	NA	NA	NA
QBA15850.1|3808731_3810873_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
QBA15851.1|3810962_3812231_-	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
QBA15852.1|3812230_3813667_-	DUF3526 domain-containing protein	NA	NA	NA	NA	NA
QBA15853.1|3813677_3814400_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.2e-16
QBA15854.1|3816726_3816930_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15855.1|3816926_3817316_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15856.1|3817384_3818620_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA16945.1|3820554_3820800_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15857.1|3820796_3821069_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15858.1|3821065_3821272_+	hypothetical protein	NA	NA	NA	NA	NA
QBA15859.1|3821229_3821493_+	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	71.4	7.2e-17
QBA15860.1|3821765_3822017_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15861.1|3822184_3822679_+|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	49.1	1.4e-37
QBA15862.1|3822938_3823736_-	endonuclease	NA	NA	NA	NA	NA
QBA15863.1|3823732_3825007_-	DNA cytosine methyltransferase	NA	A0A191SB20	Nostoc_phage	37.4	8.3e-58
QBA15864.1|3825087_3825498_-	DNA mismatch endonuclease Vsr	NA	I6NSG0	Burkholderia_phage	52.0	7.0e-35
QBA15865.1|3826810_3826969_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15866.1|3826965_3827268_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16946.1|3827274_3828360_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
QBA15867.1|3828617_3829097_-	hypothetical protein	NA	NA	NA	NA	NA
QBA15868.1|3829110_3829830_-	P-type DNA transfer protein VirB5	NA	NA	NA	NA	NA
QBA15869.1|3830319_3831696_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
QBA15870.1|3831838_3833215_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
3840262:3840279	attR	CGGCATCCTGCCCGACCA	NA	NA	NA	NA
>prophage 28
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4038025	4095551	4982118	transposase,tRNA	Tupanvirus(14.29%)	43	NA	NA
QBA16022.1|4038025_4039030_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QBA16965.1|4039492_4039687_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16023.1|4040437_4041013_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
QBA16024.1|4041071_4042595_-	catalase	NA	A0A2K9L0T1	Tupanvirus	48.0	2.2e-97
QBA16025.1|4043285_4043756_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBA16966.1|4043717_4043906_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16967.1|4043918_4044884_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16026.1|4044966_4045233_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16027.1|4045506_4047639_-	ATP-dependent DNA helicase DinG	NA	NA	NA	NA	NA
QBA16968.1|4048100_4048487_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16028.1|4048488_4049340_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
QBA16029.1|4049392_4050274_+	TolB-like protein	NA	NA	NA	NA	NA
QBA16030.1|4050896_4053431_-	iron-uptake factor	NA	NA	NA	NA	NA
QBA16031.1|4053664_4054417_+	DNA/RNA non-specific endonuclease	NA	H6X497	Enterobacteria_phage	33.9	5.6e-22
QBA16032.1|4054544_4055459_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16033.1|4056731_4057724_-	porphobilinogen synthase	NA	NA	NA	NA	NA
QBA16034.1|4058388_4058847_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16035.1|4058946_4060737_-	DUF885 domain-containing protein	NA	NA	NA	NA	NA
QBA16036.1|4060945_4063183_-	S9 family peptidase	NA	NA	NA	NA	NA
QBA16037.1|4063607_4064297_-	glutathione S-transferase	NA	NA	NA	NA	NA
QBA16969.1|4064686_4067701_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA16038.1|4067884_4068586_+	peptidase	NA	NA	NA	NA	NA
QBA16039.1|4068575_4069589_+	cupin-like domain-containing protein	NA	NA	NA	NA	NA
QBA16040.1|4069599_4071165_+	tryptophan 7-halogenase	NA	E3SL43	Synechococcus_phage	28.8	7.3e-40
QBA16041.1|4071304_4072327_+	energy transducer TonB	NA	NA	NA	NA	NA
QBA16042.1|4072848_4074225_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.8	5.4e-79
QBA16043.1|4074255_4075449_-	ABC transporter permease	NA	NA	NA	NA	NA
QBA16044.1|4075445_4076192_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	5.2e-20
QBA16045.1|4076223_4077825_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QBA16046.1|4077885_4078086_-	transcriptional regulator	NA	NA	NA	NA	NA
QBA16970.1|4078082_4078670_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16047.1|4079155_4079428_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA	NA
QBA16048.1|4079492_4080488_+	cation transporter	NA	NA	NA	NA	NA
QBA16049.1|4080572_4081334_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
QBA16050.1|4081436_4082432_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.0	9.4e-25
QBA16971.1|4082449_4083241_+	ABC transporter permease	NA	NA	NA	NA	NA
QBA16051.1|4083243_4083993_+	DUF3800 domain-containing protein	NA	A0A1W6JTE9	Pseudomonas_phage	44.4	5.6e-54
QBA16972.1|4084111_4085050_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
QBA16052.1|4085049_4085232_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16053.1|4086843_4087950_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16973.1|4089010_4089976_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16054.1|4093930_4094693_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16055.1|4094753_4095551_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4104397	4172928	4982118	transposase,tRNA	Bacillus_phage(25.0%)	45	NA	NA
QBA16064.1|4104397_4104829_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
QBA16065.1|4104831_4105461_+	acyltransferase	NA	NA	NA	NA	NA
QBA16066.1|4106098_4108267_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA	NA
QBA16067.1|4108393_4110556_-	type III secretion system effector protein	NA	NA	NA	NA	NA
QBA16974.1|4111381_4112347_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16068.1|4112539_4114021_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	66.0	2.7e-100
QBA16975.1|4114457_4114823_-	L-rhamnose mutarotase	NA	NA	NA	NA	NA
QBA16069.1|4114819_4116121_-	L-fucose:H+ symporter permease	NA	NA	NA	NA	NA
QBA16070.1|4116301_4117078_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
QBA16071.1|4117554_4118139_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16976.1|4118331_4121781_-	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA	NA
QBA16072.1|4121921_4122122_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16073.1|4122528_4125171_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16977.1|4125274_4127674_-	NdvB protein	NA	NA	NA	NA	NA
QBA16074.1|4127676_4129059_-	MFS transporter	NA	NA	NA	NA	NA
QBA16075.1|4129216_4129801_+	gluconokinase	NA	NA	NA	NA	NA
QBA16076.1|4129853_4130617_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16077.1|4131533_4133288_+	polyvinylalcohol dehydrogenase	NA	A0A0M4JT37	Mollivirus	35.6	7.3e-81
QBA16078.1|4133595_4133901_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16978.1|4133803_4134244_-	3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
QBA16079.1|4134263_4134692_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16080.1|4136089_4137325_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
QBA16081.1|4137486_4138318_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16082.1|4138377_4139592_-|transposase	IS4 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	33.4	4.1e-54
QBA16083.1|4139723_4140521_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16084.1|4140560_4141324_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16085.1|4141395_4142352_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.4	2.9e-39
QBA16086.1|4143196_4144162_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16087.1|4144179_4144737_+	N-acetyltransferase	NA	NA	NA	NA	NA
QBA16088.1|4144755_4145043_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16089.1|4145427_4146222_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	1.7e-08
QBA16090.1|4146221_4146971_+	ABC transporter permease	NA	NA	NA	NA	NA
QBA16091.1|4146982_4147534_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
QBA16092.1|4147530_4148193_+	organic solvent ABC transporter	NA	NA	NA	NA	NA
QBA16093.1|4148182_4148473_+	STAS domain-containing protein	NA	NA	NA	NA	NA
QBA16094.1|4148483_4149542_+	VacJ family lipoprotein	NA	NA	NA	NA	NA
QBA16095.1|4151340_4152104_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16096.1|4152208_4153171_+|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
QBA16097.1|4153517_4154333_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	A0A127AWE5	Bacillus_phage	27.3	6.3e-19
QBA16098.1|4163651_4165556_-	GAF domain-containing protein	NA	Q6XLU9	Feldmannia_irregularis_virus	27.7	3.9e-19
QBA16099.1|4165552_4166155_-	biliverdin-producing heme oxygenase	NA	NA	NA	NA	NA
QBA16100.1|4166214_4167519_-	tetracycline resistance MFS efflux pump	NA	NA	NA	NA	NA
QBA16101.1|4168066_4170229_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
QBA16102.1|4170440_4171760_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16103.1|4171959_4172928_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
>prophage 30
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4228749	4281379	4982118	protease,transposase,tRNA	Ralstonia_phage(28.57%)	25	NA	NA
QBA16141.1|4228749_4230654_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
QBA16142.1|4231187_4232876_-	DUF2875 domain-containing protein	NA	NA	NA	NA	NA
QBA16143.1|4232872_4235074_-	DUF3274 domain-containing protein	NA	A0A077K801	Ralstonia_phage	29.7	5.9e-19
QBA16144.1|4235135_4235399_-	PAAR domain-containing protein	NA	A4JWV5	Burkholderia_virus	43.4	4.4e-06
QBA16145.1|4235395_4237087_-	DUF2875 domain-containing protein	NA	NA	NA	NA	NA
QBA16981.1|4237083_4239237_-	DUF3274 domain-containing protein	NA	A0A077K801	Ralstonia_phage	28.5	2.0e-27
QBA16146.1|4239304_4242028_-	type VI secretion system tip protein VgrG	NA	A0A2H4JCD4	uncultured_Caudovirales_phage	30.0	4.8e-71
QBA16147.1|4242432_4243809_-|transposase	IS5-like element ISXoo4 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	2.7e-78
QBA16148.1|4244381_4246268_-	arginine decarboxylase	NA	NA	NA	NA	NA
QBA16149.1|4246505_4247363_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	31.5	2.9e-14
QBA16150.1|4247779_4248391_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16151.1|4248583_4249396_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16152.1|4250315_4252301_-	beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
QBA16982.1|4252913_4253252_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
QBA16153.1|4253441_4253720_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16154.1|4253736_4255257_+|protease	ATP-dependent protease	protease	NA	NA	NA	NA
QBA16155.1|4255413_4256733_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16156.1|4263877_4266994_+	DUF3416 domain-containing protein	NA	NA	NA	NA	NA
QBA16157.1|4266990_4270341_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
QBA16158.1|4270352_4272536_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
QBA16159.1|4273358_4273886_+	xylosidase	NA	NA	NA	NA	NA
QBA16160.1|4273861_4273957_+	xylosidase	NA	NA	NA	NA	NA
QBA16161.1|4276558_4277941_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	53.7	4.7e-75
QBA16983.1|4278179_4278977_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16984.1|4280413_4281379_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4316088	4343624	4982118	holin,transposase	Ralstonia_phage(50.0%)	25	NA	NA
QBA16179.1|4316088_4317045_-|transposase	IS30 family transposase IS1112a	transposase	Q9MBM9	Staphylococcus_prophage	35.2	2.1e-42
QBA16180.1|4317846_4318245_-	host attachment protein	NA	NA	NA	NA	NA
QBA16181.1|4318336_4319029_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16182.1|4319198_4319669_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
QBA16183.1|4319680_4319863_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16184.1|4321135_4321447_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16185.1|4321701_4322649_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.7	6.6e-44
QBA16186.1|4322789_4323848_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
QBA16187.1|4323986_4324268_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16188.1|4324308_4324581_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16189.1|4324672_4324858_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16190.1|4324971_4325922_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.9	3.0e-97
QBA16191.1|4326628_4327516_+	TIGR01777 family protein	NA	NA	NA	NA	NA
QBA16192.1|4327821_4328139_+	ATP-binding protein	NA	NA	NA	NA	NA
QBA16193.1|4328598_4329450_-	histidine biosynthesis protein HisIE	NA	NA	NA	NA	NA
QBA16194.1|4329691_4331128_+	Do family serine endopeptidase	NA	W5SAB9	Pithovirus	30.7	1.5e-10
QBA16195.1|4331244_4331607_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16196.1|4331610_4332096_+|holin	phage holin family protein	holin	NA	NA	NA	NA
QBA16197.1|4332092_4332476_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16988.1|4333033_4334662_-	type III secretion system effector XopAE	NA	NA	NA	NA	NA
QBA16198.1|4335537_4337910_-	serine kinase	NA	NA	NA	NA	NA
QBA16199.1|4338345_4339581_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA16200.1|4339951_4340935_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	61.2	7.5e-99
QBA16201.1|4341123_4342443_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16202.1|4342655_4343624_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	8.7e-100
>prophage 32
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4364855	4435435	4982118	transposase,tRNA	Ralstonia_phage(42.86%)	52	NA	NA
QBA16224.1|4364855_4365824_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16225.1|4366286_4366706_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16226.1|4367081_4367645_+	lytic transglycosylase	NA	A0A0K2QQJ4	Ralstonia_phage	38.5	4.4e-11
QBA16227.1|4368108_4369662_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16228.1|4371877_4372219_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16990.1|4372403_4374962_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
QBA16229.1|4374980_4375241_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16230.1|4375300_4376063_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16231.1|4376070_4377795_-	AarF/ABC1/UbiB kinase family protein	NA	A0A0P0CRE2	Ostreococcus_lucimarinus_virus	28.7	1.7e-34
QBA16232.1|4377805_4378018_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16233.1|4378035_4378977_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
QBA16234.1|4379169_4380534_+	glycoside hydrolase family 10 protein	NA	NA	NA	NA	NA
QBA16235.1|4380530_4382159_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
QBA16236.1|4382632_4384216_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
QBA16237.1|4384212_4386447_+	glycogen-branching enzyme	NA	NA	NA	NA	NA
QBA16238.1|4386449_4388207_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
QBA16991.1|4388263_4390153_+	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
QBA16239.1|4392773_4392959_+	DUF2934 domain-containing protein	NA	NA	NA	NA	NA
QBA16240.1|4393073_4395236_+	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
QBA16241.1|4395252_4395885_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
QBA16242.1|4396686_4397733_-	methylamine utilization protein	NA	NA	NA	NA	NA
QBA16243.1|4397780_4399169_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16244.1|4399390_4399591_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16245.1|4399587_4400553_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16246.1|4402224_4403601_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	56.5	9.2e-79
QBA16247.1|4404202_4404895_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.2	4.4e-05
QBA16248.1|4405666_4406986_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16249.1|4407069_4407822_-	HAD family hydrolase	NA	NA	NA	NA	NA
QBA16250.1|4407859_4408300_-	EF-hand domain-containing protein	NA	NA	NA	NA	NA
QBA16992.1|4408506_4408848_-	EF-hand domain-containing protein	NA	NA	NA	NA	NA
QBA16251.1|4409073_4409451_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16993.1|4409661_4409859_-	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA	NA
QBA16252.1|4410165_4410912_-	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA	NA
QBA16253.1|4411004_4411811_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
QBA16994.1|4412034_4413447_+	NlpC-P60 family protein	NA	NA	NA	NA	NA
QBA16254.1|4413443_4414541_+	dipeptide epimerase	NA	NA	NA	NA	NA
QBA16255.1|4414695_4415494_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16256.1|4415547_4416346_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16257.1|4416565_4417528_+|transposase	IS1595-like element ISXo2 family transposase	transposase	NA	NA	NA	NA
QBA16258.1|4417975_4418739_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16259.1|4419020_4419797_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16260.1|4419793_4421110_+	amino acid permease	NA	NA	NA	NA	NA
QBA16261.1|4421626_4422862_+|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA16262.1|4423455_4423737_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16263.1|4424297_4424735_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16264.1|4424737_4425706_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16265.1|4426066_4427245_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA	NA
QBA16266.1|4427280_4427607_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16267.1|4428240_4429203_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
QBA16268.1|4431536_4433708_-	beta-glucosidase	NA	NA	NA	NA	NA
QBA16269.1|4433935_4434292_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
QBA16270.1|4434370_4435435_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	56.6	4.3e-100
>prophage 33
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4459456	4504945	4982118	transposase	Acinetobacter_phage(33.33%)	34	NA	NA
QBA16290.1|4459456_4460422_+|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16291.1|4460434_4460905_-	bacterioferritin	NA	NA	NA	NA	NA
QBA16996.1|4461247_4461463_-	bacterioferritin	NA	NA	NA	NA	NA
QBA16292.1|4461543_4462161_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
QBA16293.1|4462709_4463102_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
QBA16294.1|4463105_4463534_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
QBA16997.1|4463719_4464373_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
QBA16295.1|4464627_4464942_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
QBA16296.1|4465102_4465897_-	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA	NA
QBA16297.1|4466034_4466727_+	CRP-like protein Clp	NA	NA	NA	NA	NA
QBA16298.1|4467047_4467764_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
QBA16299.1|4467756_4468554_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	52.9	7.5e-65
QBA16300.1|4468690_4469728_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	44.1	7.2e-76
QBA16301.1|4469845_4470475_-	flavin reductase family protein	NA	NA	NA	NA	NA
QBA16302.1|4470471_4470630_-	molybdopterin biosynthesis protein	NA	NA	NA	NA	NA
QBA16303.1|4470626_4471208_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	59.3	3.2e-65
QBA16304.1|4471913_4472735_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16305.1|4472634_4473736_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.5	1.1e-39
QBA16306.1|4474340_4476572_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
QBA16998.1|4476761_4478474_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16307.1|4478622_4479999_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	56.5	3.7e-80
QBA16308.1|4482206_4483005_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16309.1|4483989_4484958_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.0	4.3e-99
QBA16310.1|4486368_4487340_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.9	7.2e-38
QBA16311.1|4487532_4488717_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.8	5.0e-41
QBA16312.1|4489184_4490000_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	35.8	7.4e-36
QBA16313.1|4490758_4492075_-	amidohydrolase	NA	NA	NA	NA	NA
QBA16314.1|4492334_4493579_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QBA16315.1|4493671_4496920_+	acriflavine resistance protein B	NA	NA	NA	NA	NA
QBA16316.1|4497053_4500194_+	AcrB/AcrD/AcrF family protein	NA	NA	NA	NA	NA
QBA16317.1|4500483_4501851_-	VOC family protein	NA	NA	NA	NA	NA
QBA16318.1|4501860_4502070_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16319.1|4502595_4503561_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
QBA16320.1|4503979_4504945_-|transposase	IS1595-like element ISXo5 family transposase	transposase	NA	NA	NA	NA
>prophage 34
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4517654	4592555	4982118	integrase,transposase,tRNA	Leptospira_phage(18.18%)	50	4532380:4532399	4546263:4546282
QBA16332.1|4517654_4518131_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
QBA16333.1|4518157_4518619_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16334.1|4519004_4519325_+	DUF4156 domain-containing protein	NA	NA	NA	NA	NA
QBA16335.1|4519426_4520443_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
QBA16336.1|4520514_4521678_+	Fic family protein	NA	NA	NA	NA	NA
QBA16337.1|4521674_4523306_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	37.5	1.7e-63
QBA16338.1|4523307_4525809_+	helicase SNF2	NA	NA	NA	NA	NA
QBA16339.1|4525805_4526708_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
QBA16340.1|4526929_4527313_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
QBA16341.1|4527631_4529302_+	peptide synthase	NA	NA	NA	NA	NA
QBA16342.1|4529530_4530541_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A0E3FNQ3	Synechococcus_phage	32.6	1.5e-14
QBA16343.1|4530605_4530764_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
QBA16344.1|4530998_4532375_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	55.1	5.0e-77
4532380:4532399	attL	GGTTTTTCAGGGGCGACTAT	NA	NA	NA	NA
QBA16345.1|4532385_4532919_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16346.1|4533347_4534607_-	HD-GYP domain-containing protein	NA	NA	NA	NA	NA
QBA16347.1|4534745_4536053_-	MFS transporter	NA	NA	NA	NA	NA
QBA17000.1|4538137_4539172_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	32.8	8.0e-43
QBA16348.1|4539522_4540068_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
QBA17001.1|4540093_4540360_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
QBA16349.1|4540534_4542373_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
QBA16350.1|4542603_4543479_-|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	48.5	5.3e-56
QBA16351.1|4544964_4546200_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA17002.1|4546621_4546885_-	xanthomonadin biosynthesis protein	NA	NA	NA	NA	NA
4546263:4546282	attR	GGTTTTTCAGGGGCGACTAT	NA	NA	NA	NA
QBA16352.1|4549176_4550076_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
QBA16353.1|4551021_4553823_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	30.4	2.4e-65
QBA16354.1|4553899_4554190_+	DUF2782 domain-containing protein	NA	NA	NA	NA	NA
QBA16355.1|4554547_4555575_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	39.4	3.9e-42
QBA16356.1|4556826_4557081_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16357.1|4557287_4558256_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16358.1|4558739_4561427_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
QBA16359.1|4564487_4565456_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16360.1|4569914_4570115_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16361.1|4571537_4572050_-	hypothetical protein	NA	Q8W6R2	Burkholderia_virus	68.8	1.6e-44
QBA16362.1|4572046_4572274_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16363.1|4572557_4573004_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16364.1|4573122_4575129_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
QBA16365.1|4575125_4575557_+	ATP-binding protein	NA	NA	NA	NA	NA
QBA16366.1|4575553_4575973_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
QBA16367.1|4576458_4577223_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
QBA16368.1|4577433_4578024_-	nitroreductase family protein	NA	NA	NA	NA	NA
QBA17003.1|4578157_4579105_+	nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA	NA
QBA16369.1|4580000_4580501_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16370.1|4583588_4584149_+	VUT family protein	NA	A0A2I7SAW6	Vibrio_phage	29.6	2.1e-13
QBA16371.1|4584244_4587070_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
QBA16372.1|4587231_4587750_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16373.1|4587749_4588670_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
QBA16374.1|4589098_4589722_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16375.1|4589731_4589917_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16376.1|4590019_4590640_-	hypothetical protein	NA	NA	NA	NA	NA
QBA17004.1|4591589_4592555_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 35
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4670080	4815552	4982118	tail,transposase,tRNA	Arthrobacter_phage(16.67%)	96	NA	NA
QBA16422.1|4670080_4671046_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
QBA16423.1|4671146_4671572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16424.1|4671614_4672377_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16425.1|4672439_4673471_+|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	42.9	2.0e-70
QBA16426.1|4674831_4676088_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
QBA16427.1|4676084_4676975_+	allantoinase PuuE	NA	NA	NA	NA	NA
QBA16428.1|4676971_4677367_+	DUF3225 domain-containing protein	NA	NA	NA	NA	NA
QBA17018.1|4677386_4677965_+	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA	NA
QBA16429.1|4677850_4678708_+	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
QBA16430.1|4678640_4680029_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16431.1|4684814_4686899_-	S9 family peptidase	NA	NA	NA	NA	NA
QBA16432.1|4686998_4689026_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
QBA16433.1|4689268_4690879_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	51.5	1.1e-19
QBA16434.1|4690889_4692053_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA	NA
QBA16435.1|4692181_4692802_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16436.1|4693132_4693321_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16437.1|4693363_4693699_-	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
QBA16438.1|4695323_4695635_-	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
QBA16439.1|4696753_4697272_+	cytochrome c5 family protein	NA	NA	NA	NA	NA
QBA16440.1|4697542_4699261_+	nuclease	NA	NA	NA	NA	NA
QBA16441.1|4699351_4699738_-	MerC domain-containing protein	NA	NA	NA	NA	NA
QBA16442.1|4699799_4701125_+	GTP-binding protein	NA	NA	NA	NA	NA
QBA16443.1|4701239_4702553_-	type III effector protein XopR	NA	NA	NA	NA	NA
QBA16444.1|4702651_4703377_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
QBA16445.1|4704333_4705428_+	cell division protein ZapE	NA	NA	NA	NA	NA
QBA16446.1|4706932_4709692_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	35.9	3.5e-146
QBA16447.1|4709944_4711534_-	sulfotransferase family protein	NA	NA	NA	NA	NA
QBA16448.1|4711533_4713771_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
QBA16449.1|4714059_4714968_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
QBA16450.1|4715057_4716872_+	type II/IV secretion system protein	NA	NA	NA	NA	NA
QBA16451.1|4717257_4726041_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16452.1|4726181_4726979_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16453.1|4726893_4727124_-	hypothetical protein	NA	NA	NA	NA	NA
QBA17019.1|4727151_4727388_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16454.1|4727523_4728276_+	glutamine amidotransferase	NA	NA	NA	NA	NA
QBA16455.1|4728335_4729235_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16456.1|4729386_4730142_-	twin-arginine translocase subunit TatC	NA	NA	NA	NA	NA
QBA16457.1|4730138_4730774_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
QBA16458.1|4730789_4731017_-	twin-arginine translocase subunit TatA	NA	NA	NA	NA	NA
QBA16459.1|4731089_4731992_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16460.1|4732146_4733112_+	ferrochelatase	NA	NA	NA	NA	NA
QBA16461.1|4733209_4733965_+	alpha/beta hydrolase	NA	G1DB77	Mycobacterium_phage	35.2	9.7e-06
QBA16462.1|4734045_4734504_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16463.1|4734774_4735560_-	M48 family peptidase	NA	NA	NA	NA	NA
QBA16464.1|4735731_4736700_+|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16465.1|4737346_4738252_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	32.9	4.1e-43
QBA16466.1|4738315_4739233_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	62.5	3.1e-83
QBA16467.1|4739323_4739833_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16468.1|4741398_4742466_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QBA16469.1|4742641_4744837_+	alpha-glucuronidase	NA	NA	NA	NA	NA
QBA16470.1|4744833_4746798_+	9-O-acetylesterase	NA	NA	NA	NA	NA
QBA16471.1|4746809_4748069_+	D-galactonate dehydratase family protein	NA	Q6A202	Oenococcus_phage	26.0	3.5e-40
QBA17020.1|4748068_4749769_+	glycoside hydrolase family 43 protein	NA	NA	NA	NA	NA
QBA16472.1|4749771_4752486_+	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA	NA
QBA16473.1|4752708_4754181_+	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	32.1	4.5e-47
QBA16474.1|4755158_4756214_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16475.1|4756441_4757860_-	glucuronate isomerase	NA	NA	NA	NA	NA
QBA16476.1|4757900_4758878_-	endo-1,4-beta-xylanase	NA	NA	NA	NA	NA
QBA16477.1|4760294_4761776_-	MFS transporter	NA	NA	NA	NA	NA
QBA17021.1|4762117_4764991_+	TonB-dependent receptor	NA	NA	NA	NA	NA
QBA16478.1|4765089_4766577_+	MFS transporter	NA	NA	NA	NA	NA
QBA16479.1|4766608_4767643_+	alpha-N-arabinofuranosidase	NA	NA	NA	NA	NA
QBA16480.1|4768059_4768857_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA17022.1|4769733_4769871_-	hypothetical protein	NA	NA	NA	NA	NA
QBA17023.1|4770163_4771120_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
QBA16481.1|4771847_4772610_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16482.1|4772627_4773728_+	EAL domain-containing protein	NA	NA	NA	NA	NA
QBA16483.1|4774923_4776018_-	ferredoxin reductase	NA	NA	NA	NA	NA
QBA16484.1|4776092_4776773_+	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
QBA16485.1|4776805_4777604_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16486.1|4777732_4779052_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
QBA16487.1|4779154_4780111_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	36.0	1.4e-41
QBA16488.1|4781577_4782036_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16489.1|4782137_4782566_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
QBA16490.1|4782812_4783676_-	DUF2884 family protein	NA	NA	NA	NA	NA
QBA16491.1|4786852_4787119_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16492.1|4787280_4787529_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QBA16493.1|4787737_4788496_-	hypothetical protein	NA	NA	NA	NA	NA
QBA17024.1|4788492_4789188_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16494.1|4789286_4789619_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16495.1|4790090_4790525_-	PAAR domain-containing protein	NA	NA	NA	NA	NA
QBA16496.1|4790640_4790886_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16497.1|4790886_4791081_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16498.1|4791221_4791554_+	hypothetical protein	NA	NA	NA	NA	NA
QBA17025.1|4791802_4791901_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16499.1|4794325_4794616_-	addiction module antidote protein, HigA family	NA	M9MUN2	Rhodococcus_phage	53.8	1.5e-15
QBA16500.1|4794633_4794915_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	40.7	3.1e-10
QBA16501.1|4795009_4797262_-	exodeoxyribonuclease V subunit alpha	NA	A0A0K2FLP8	Brevibacillus_phage	21.9	1.8e-10
QBA16502.1|4797313_4801522_-	exodeoxyribonuclease V subunit beta	NA	S5MMD7	Bacillus_phage	22.5	4.3e-10
QBA16503.1|4801518_4804932_-	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA	NA
QBA16504.1|4805337_4807992_+	ATPase	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	26.7	1.1e-48
QBA16505.1|4812234_4812477_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16506.1|4812762_4813308_+	microcystin-dependent protein	NA	A0A0U4JXW2	Arthrobacter_phage	32.9	1.9e-11
QBA16507.1|4813376_4813904_+|tail	phage tail protein	tail	A0A218M5J0	Arthrobacter_phage	33.1	1.2e-15
QBA16508.1|4813962_4814499_+	microcystin-dependent protein	NA	A0A0U4JYA4	Arthrobacter_phage	32.1	1.2e-10
QBA16509.1|4814586_4815552_+|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 36
CP031698	Xanthomonas oryzae pv. oryzae strain PXO142 chromosome, complete genome	4982118	4858721	4925642	4982118	protease,transposase	Staphylococcus_phage(25.0%)	59	NA	NA
QBA16532.1|4858721_4859690_-|transposase	IS5-like element ISXo1 family transposase	transposase	A0A077K814	Ralstonia_phage	60.3	8.7e-100
QBA16533.1|4860237_4861340_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.4	2.5e-42
QBA16534.1|4862020_4862323_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16535.1|4862468_4863272_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	34.3	4.7e-35
QBA16536.1|4863333_4864362_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
QBA16537.1|4864500_4865472_-	aldo/keto reductase	NA	NA	NA	NA	NA
QBA16538.1|4865704_4866559_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
QBA17033.1|4866651_4867224_+	pseudouridine synthase	NA	NA	NA	NA	NA
QBA16539.1|4867245_4867440_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16540.1|4867546_4867987_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16541.1|4868149_4870651_-	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	25.4	6.0e-20
QBA16542.1|4871339_4871813_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	48.7	2.1e-35
QBA16543.1|4872125_4873445_-	L-fuconate dehydratase	NA	NA	NA	NA	NA
QBA16544.1|4873968_4874826_-	FAA hydrolase family protein	NA	NA	NA	NA	NA
QBA16545.1|4874996_4875767_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
QBA16546.1|4875763_4876636_-	amidohydrolase	NA	NA	NA	NA	NA
QBA16547.1|4876632_4877643_-	aldo/keto reductase	NA	NA	NA	NA	NA
QBA16548.1|4877639_4877861_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16549.1|4877955_4879053_+	xylosidase	NA	NA	NA	NA	NA
QBA16550.1|4879186_4879390_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16551.1|4880069_4880273_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16552.1|4880269_4880971_-	DNA-binding response regulator	NA	NA	NA	NA	NA
QBA16553.1|4881232_4883176_-	acetyl-coenzyme A synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	38.2	1.3e-83
QBA16554.1|4883473_4883827_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16555.1|4883823_4884873_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16556.1|4884959_4885277_+	DUF485 domain-containing protein	NA	NA	NA	NA	NA
QBA16557.1|4885273_4887001_+	cation acetate symporter	NA	NA	NA	NA	NA
QBA16558.1|4887608_4888310_-	ROK family protein	NA	NA	NA	NA	NA
QBA16559.1|4888666_4889446_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
QBA16560.1|4889442_4889880_+	GFA family protein	NA	NA	NA	NA	NA
QBA16561.1|4889941_4890193_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
QBA16562.1|4890319_4890916_+	4-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
QBA16563.1|4890934_4892506_-	alkaline phosphatase	NA	NA	NA	NA	NA
QBA17034.1|4892682_4894311_-	alkaline phosphatase	NA	NA	NA	NA	NA
QBA17035.1|4894533_4895172_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
QBA16564.1|4896240_4896600_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16565.1|4896784_4897021_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
QBA16566.1|4897034_4897202_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
QBA16567.1|4897634_4898102_-	amidohydrolase	NA	NA	NA	NA	NA
QBA16568.1|4898098_4899334_-|transposase	ISL3-like element ISXoo13 family transposase	transposase	NA	NA	NA	NA
QBA17036.1|4899973_4900147_-	4-oxalomesaconate hydratase	NA	NA	NA	NA	NA
QBA16569.1|4900205_4901261_-	4-oxalomesaconate tautomerase	NA	NA	NA	NA	NA
QBA16570.1|4901253_4901925_-	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA	NA
QBA16571.1|4902022_4903330_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QBA16572.1|4903346_4904765_+	cardiolipin synthase	NA	NA	NA	NA	NA
QBA16573.1|4905335_4906730_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA	NA
QBA16574.1|4906729_4907068_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16575.1|4907077_4909264_+	DNA helicase II	NA	A7KV33	Bacillus_phage	36.7	2.2e-111
QBA16576.1|4909439_4909664_-	hypothetical protein	NA	NA	NA	NA	NA
QBA17037.1|4910244_4911210_-|transposase	IS1595 family transposase	transposase	NA	NA	NA	NA
QBA17038.1|4911385_4912801_-	amino acid permease	NA	NA	NA	NA	NA
QBA16577.1|4913017_4913227_+	hypothetical protein	NA	NA	NA	NA	NA
QBA16578.1|4913291_4915616_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
QBA17039.1|4916021_4916384_+	hypothetical protein	NA	NA	NA	NA	NA
QBA17040.1|4916761_4917307_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	33.9	2.6e-16
QBA16579.1|4917366_4918164_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
QBA16580.1|4921411_4922539_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
QBA16581.1|4923393_4924734_-	hypothetical protein	NA	NA	NA	NA	NA
QBA16582.1|4924949_4925642_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
