assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	1	443148-443248	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|128aa|up_8|CP030138.1_435754_436138_-,NA|98aa|up_6|CP030138.1_437091_437385_-,NA|34aa|up_1|CP030138.1_442372_442474_+,NA|86aa|up_0|CP030138.1_442681_442939_-,NA|221aa|down_1|CP030138.1_444338_445001_-	NA|194aa|up_9|CP030138.1_435107_435689_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|CP030138.1_435754_436138_-	NA	NA|209aa|up_7|CP030138.1_436392_437019_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|CP030138.1_437091_437385_-	NA	NA|508aa|up_5|CP030138.1_437463_438987_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|CP030138.1_439002_439572_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|CP030138.1_440063_440819_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|CP030138.1_440899_442288_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|CP030138.1_442372_442474_+	NA	NA|86aa|up_0|CP030138.1_442681_442939_-	NA	NA|319aa|down_0|CP030138.1_443264_444221_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|CP030138.1_444338_445001_-	NA	NA|136aa|down_2|CP030138.1_445143_445551_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|CP030138.1_446063_446642_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|CP030138.1_446641_447910_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|CP030138.1_447947_449414_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|CP030138.1_449438_450980_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|CP030138.1_451047_452241_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|CP030138.1_452267_452468_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|CP030138.1_452965_453196_-	pfam12645, HTH_16, Helix-turn-helix domain
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	2	708594-708686	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_4|CP030138.1_705077_705185_+,NA|103aa|up_1|CP030138.1_707296_707605_-,NA|169aa|down_4|CP030138.1_712433_712940_+,NA|239aa|down_5|CP030138.1_713101_713818_+	NA|179aa|up_9|CP030138.1_700428_700965_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|CP030138.1_701133_701610_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|CP030138.1_701649_702945_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|CP030138.1_702972_703494_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|CP030138.1_703992_705003_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|CP030138.1_705077_705185_+	NA	NA|128aa|up_3|CP030138.1_705310_705694_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|CP030138.1_705690_707352_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|103aa|up_1|CP030138.1_707296_707605_-	NA	NA|212aa|up_0|CP030138.1_707740_708376_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|CP030138.1_708814_709642_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|CP030138.1_709789_710740_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|CP030138.1_710794_711514_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|CP030138.1_711497_712298_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|CP030138.1_712433_712940_+	NA	NA|239aa|down_5|CP030138.1_713101_713818_+	NA	NA|263aa|down_6|CP030138.1_713986_714775_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|CP030138.1_715025_715400_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|CP030138.1_716347_717277_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|CP030138.1_717471_717696_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	3	824339-824421	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|CP030138.1_810939_811146_+,NA|34aa|down_1|CP030138.1_825877_825979_+,NA|82aa|down_3|CP030138.1_827627_827873_-,NA|89aa|down_6|CP030138.1_829673_829940_+	NA|69aa|up_9|CP030138.1_810939_811146_+	NA	NA|237aa|up_8|CP030138.1_811233_811944_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|CP030138.1_811927_812932_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|CP030138.1_813405_815346_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|CP030138.1_815616_817500_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|CP030138.1_817511_819293_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|CP030138.1_819514_820492_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|CP030138.1_820484_821999_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|CP030138.1_822238_823297_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|CP030138.1_823647_824190_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|CP030138.1_824869_825787_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|CP030138.1_825877_825979_+	NA	NA|502aa|down_2|CP030138.1_826056_827562_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|CP030138.1_827627_827873_-	NA	NA|167aa|down_4|CP030138.1_827902_828403_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|CP030138.1_828422_829289_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|CP030138.1_829673_829940_+	NA	NA|133aa|down_7|CP030138.1_830089_830488_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|CP030138.1_830450_832556_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|CP030138.1_832673_833645_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	4	865393-865473	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	865419-865447|865419-865447|865419-865447|865419-865447|865419-865447|865419-865447|865419-865447|865419-865447|865419-865447	CP030138.1_404699-404671|CP030138.1_1861430-1861402|CP030138.1_281745-281717|CP030138.1_915326-915354|CP030138.1_998347-998375|CP030138.1_1197024-1196996|CP030138.1_1674836-1674864|CP030138.1_2071076-2071104|CP030138.1_2740763-2740735	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|CP030138.1_856306_856411_+,NA|36aa|up_5|CP030138.1_857843_857951_+,NA|45aa|down_5|CP030138.1_870774_870909_-	NA|191aa|up_9|CP030138.1_852747_853320_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|CP030138.1_853733_856265_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|CP030138.1_856306_856411_+	NA	NA|370aa|up_6|CP030138.1_856579_857690_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|CP030138.1_857843_857951_+	NA	NA|280aa|up_4|CP030138.1_858098_858938_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|CP030138.1_859111_859762_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|CP030138.1_859758_859995_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|CP030138.1_860263_862249_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|CP030138.1_862256_865103_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|CP030138.1_865709_866642_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|CP030138.1_866647_867487_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|CP030138.1_867494_867980_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|CP030138.1_867987_869427_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|CP030138.1_869493_870429_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|45aa|down_5|CP030138.1_870774_870909_-	NA	NA|304aa|down_6|CP030138.1_871252_872164_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_7|CP030138.1_872160_873156_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_8|CP030138.1_873265_874210_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_9|CP030138.1_874782_875370_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	5	915260-915341	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	915284-915317|915284-915317	CP030138.1_1406579-1406546|CP030138.1_1495732-1495765	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|38aa|up_1|CP030138.1_914162_914276_+,NA|38aa|down_0|CP030138.1_915574_915688_+	NA|206aa|up_9|CP030138.1_909017_909635_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|CP030138.1_909789_910284_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|CP030138.1_910682_911105_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|CP030138.1_911252_911969_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|CP030138.1_912051_912591_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|CP030138.1_912740_913061_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|CP030138.1_913204_913561_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|CP030138.1_913718_914099_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|CP030138.1_914162_914276_+	NA	NA|293aa|up_0|CP030138.1_914277_915156_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_0|CP030138.1_915574_915688_+	NA	NA|129aa|down_1|CP030138.1_915897_916284_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_2|CP030138.1_916276_916573_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_3|CP030138.1_916822_917848_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_4|CP030138.1_917840_918536_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_5|CP030138.1_918553_919375_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_6|CP030138.1_919518_920739_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_7|CP030138.1_920826_921555_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_8|CP030138.1_921578_922307_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_9|CP030138.1_922481_923216_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	6	978677-978959	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	3	8	978707-978732|978707-978732|978707-978732|978707-978732|978821-978846|978821-978846|978877-978929|978877-978929	CP030138.1_870846-870821|CP030138.1_978651-978676|CP030138.1_833811-833836|CP030138.1_833923-833948|CP030138.1_2060377-2060352|CP030138.1_404537-404562|CP030138.1_246070-246122|CP030138.1_2854320-2854268	NA	4	4	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|CP030138.1_967565_969062_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|CP030138.1_969054_969384_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|CP030138.1_969395_969824_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|CP030138.1_969816_972222_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|CP030138.1_972352_972736_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|CP030138.1_972799_973393_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|CP030138.1_973808_974186_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|CP030138.1_974547_975675_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|CP030138.1_975982_977173_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|CP030138.1_977281_978526_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|CP030138.1_979028_979958_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|CP030138.1_980199_981579_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|CP030138.1_981568_982774_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|CP030138.1_983124_984456_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|CP030138.1_984780_985356_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|CP030138.1_985360_985885_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|CP030138.1_985900_986476_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|CP030138.1_986635_990112_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|CP030138.1_990112_993766_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|CP030138.1_993931_994834_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	7	1112350-1112437	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|40aa|up_0|CP030138.1_1112226_1112346_+,NA|45aa|down_0|CP030138.1_1112446_1112581_-,NA|432aa|down_1|CP030138.1_1112732_1114028_+,NA|68aa|down_2|CP030138.1_1114048_1114252_-	NA|730aa|up_9|CP030138.1_1100804_1102994_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|CP030138.1_1102972_1104457_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|CP030138.1_1104449_1105478_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|CP030138.1_1105480_1106047_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|CP030138.1_1106061_1107540_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|CP030138.1_1107561_1108809_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|CP030138.1_1109073_1109880_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|CP030138.1_1109872_1111273_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|CP030138.1_1111287_1111863_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|CP030138.1_1112226_1112346_+	NA	NA|45aa|down_0|CP030138.1_1112446_1112581_-	NA	NA|432aa|down_1|CP030138.1_1112732_1114028_+	NA	NA|68aa|down_2|CP030138.1_1114048_1114252_-	NA	NA|391aa|down_3|CP030138.1_1114452_1115625_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|CP030138.1_1115678_1116221_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|CP030138.1_1116374_1116641_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|CP030138.1_1116643_1118362_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|CP030138.1_1118598_1118832_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|CP030138.1_1119029_1120391_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|CP030138.1_1120387_1121407_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	8	1192689-1192990	2,1	CRT,PILER-CR	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGCAAGTTGGNGNGGNNCCNA,TCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATAGGAAC	21,54	4	7	1192710-1192744|1192823-1192857|1192935-1192969|1192935-1192969|1192935-1192969|1192935-1192969|1192840-1192857	CP030138.1_1192654-1192688|CP030138.1_1192654-1192688|CP030138.1_2178308-2178274|CP030138.1_824321-824355|CP030138.1_870891-870857|CP030138.1_2854365-2854331|CP030138.1_1192671-1192688	NA:NA	5,2	5	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|56aa|up_6|CP030138.1_1188426_1188594_+,NA|31aa|up_4|CP030138.1_1189433_1189526_-,NA|169aa|up_2|CP030138.1_1190558_1191065_+,NA|62aa|down_0|CP030138.1_1193145_1193331_-,NA|73aa|down_1|CP030138.1_1193540_1193759_-,NA|78aa|down_2|CP030138.1_1193952_1194186_-,NA|49aa|down_4|CP030138.1_1196490_1196637_+,NA|75aa|down_5|CP030138.1_1196593_1196818_+	NA|267aa|up_9|CP030138.1_1186403_1187204_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|CP030138.1_1187215_1187803_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|CP030138.1_1187795_1188299_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|CP030138.1_1188426_1188594_+	NA	NA|110aa|up_5|CP030138.1_1188787_1189117_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|31aa|up_4|CP030138.1_1189433_1189526_-	NA	NA|134aa|up_3|CP030138.1_1189485_1189887_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|CP030138.1_1190558_1191065_+	NA	NA|166aa|up_1|CP030138.1_1191323_1191821_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|CP030138.1_1191974_1192325_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|CP030138.1_1193145_1193331_-	NA	NA|73aa|down_1|CP030138.1_1193540_1193759_-	NA	NA|78aa|down_2|CP030138.1_1193952_1194186_-	NA	NA|391aa|down_3|CP030138.1_1194750_1195923_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|down_4|CP030138.1_1196490_1196637_+	NA	NA|75aa|down_5|CP030138.1_1196593_1196818_+	NA	NA|239aa|down_6|CP030138.1_1197318_1198035_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|CP030138.1_1198142_1198868_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|CP030138.1_1198962_1199688_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|CP030138.1_1200125_1201127_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	9	1197058-1197143	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1197088-1197113|1197088-1197113|1197088-1197113|1197088-1197113|1197088-1197113	CP030138.1_281585-281610|CP030138.1_833867-833892|CP030138.1_870846-870821|CP030138.1_833811-833836|CP030138.1_833923-833948	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_8|CP030138.1_1190558_1191065_+,NA|62aa|up_5|CP030138.1_1193145_1193331_-,NA|73aa|up_4|CP030138.1_1193540_1193759_-,NA|78aa|up_3|CP030138.1_1193952_1194186_-,NA|49aa|up_1|CP030138.1_1196490_1196637_+,NA|75aa|up_0|CP030138.1_1196593_1196818_+,NA|76aa|down_6|CP030138.1_1204117_1204345_+	NA|134aa|up_9|CP030138.1_1189485_1189887_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|CP030138.1_1190558_1191065_+	NA	NA|166aa|up_7|CP030138.1_1191323_1191821_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|CP030138.1_1191974_1192325_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|CP030138.1_1193145_1193331_-	NA	NA|73aa|up_4|CP030138.1_1193540_1193759_-	NA	NA|78aa|up_3|CP030138.1_1193952_1194186_-	NA	NA|391aa|up_2|CP030138.1_1194750_1195923_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|up_1|CP030138.1_1196490_1196637_+	NA	NA|75aa|up_0|CP030138.1_1196593_1196818_+	NA	NA|239aa|down_0|CP030138.1_1197318_1198035_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|CP030138.1_1198142_1198868_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|CP030138.1_1198962_1199688_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|CP030138.1_1200125_1201127_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|CP030138.1_1201149_1202082_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|CP030138.1_1202304_1203810_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|CP030138.1_1204117_1204345_+	NA	NA|316aa|down_7|CP030138.1_1204649_1205597_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|CP030138.1_1205845_1206034_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|CP030138.1_1206945_1207080_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	10	2425243-2425393	8	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|43aa|up_9|CP030138.1_2414464_2414593_+,NA|77aa|up_5|CP030138.1_2420114_2420345_-,NA|364aa|up_0|CP030138.1_2424133_2425225_+,NA|35aa|down_0|CP030138.1_2425724_2425829_-,NA|31aa|down_3|CP030138.1_2427940_2428033_+	NA|43aa|up_9|CP030138.1_2414464_2414593_+	NA	NA|227aa|up_8|CP030138.1_2415866_2416547_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_7|CP030138.1_2416667_2417111_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|458aa|up_6|CP030138.1_2418069_2419443_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|CP030138.1_2420114_2420345_-	NA	NA|313aa|up_4|CP030138.1_2420375_2421314_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|CP030138.1_2421748_2422414_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|CP030138.1_2422565_2422886_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|CP030138.1_2422887_2423868_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|CP030138.1_2424133_2425225_+	NA	NA|35aa|down_0|CP030138.1_2425724_2425829_-	NA	NA|68aa|down_1|CP030138.1_2426253_2426457_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|379aa|down_2|CP030138.1_2426515_2427652_-	pfam02037, SAP, SAP domain	NA|31aa|down_3|CP030138.1_2427940_2428033_+	NA	NA|261aa|down_4|CP030138.1_2429505_2430288_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|CP030138.1_2430519_2432325_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|CP030138.1_2433005_2434544_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|CP030138.1_2434578_2436711_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|CP030138.1_2436722_2437157_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|CP030138.1_2437156_2438263_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCA_004136255.1_ASM413625v1	CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	11	2549375-2549568	3	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	15	2549398-2549430|2549398-2549430|2549398-2549430|2549398-2549430|2549398-2549430|2549454-2549489|2549454-2549489|2549454-2549489|2549454-2549489|2549454-2549489|2549513-2549545|2549513-2549545|2549513-2549545|2549513-2549545|2549513-2549545	CP030138.1_1197077-1197045|CP030138.1_1406533-1406501|CP030138.1_1495778-1495810|CP030138.1_2060332-2060364|CP030138.1_2820119-2820151|CP030138.1_1197024-1196989|CP030138.1_1861430-1861395|CP030138.1_281745-281710|CP030138.1_1674836-1674871|CP030138.1_2071076-2071111|CP030138.1_870801-870833|CP030138.1_1197077-1197045|CP030138.1_1406533-1406501|CP030138.1_2060332-2060364|CP030138.1_2820119-2820151	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|CP030138.1_2539902_2540067_+,NA|106aa|up_8|CP030138.1_2540311_2540629_+,NA|84aa|up_5|CP030138.1_2545753_2546005_+,NA|57aa|up_0|CP030138.1_2549144_2549315_+,NA	NA|55aa|up_9|CP030138.1_2539902_2540067_+	NA	NA|106aa|up_8|CP030138.1_2540311_2540629_+	NA	NA|1056aa|up_7|CP030138.1_2540815_2543983_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|CP030138.1_2544099_2545365_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|CP030138.1_2545753_2546005_+	NA	NA|255aa|up_4|CP030138.1_2545996_2546761_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|CP030138.1_2546922_2547363_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|CP030138.1_2547355_2548567_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|CP030138.1_2548668_2549019_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|CP030138.1_2549144_2549315_+	NA	NA|341aa|down_0|CP030138.1_2549709_2550732_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|CP030138.1_2550751_2551351_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|CP030138.1_2551357_2551591_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|CP030138.1_2551596_2552043_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|CP030138.1_2552056_2552542_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|CP030138.1_2552538_2553798_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|CP030138.1_2553860_2554355_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|CP030138.1_2554356_2554863_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|CP030138.1_2554893_2555898_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|CP030138.1_2556067_2556673_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
