assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	1	42938-43111	1,1	PILER-CR,CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	19	42991-43007|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076|43061-43076	CP030137.1_2507102-2507086|CP030137.1_207603-207618|CP030137.1_810863-810878|CP030137.1_810921-810936|CP030137.1_1336849-1336864|CP030137.1_1421713-1421728|CP030137.1_1426125-1426110|CP030137.1_1634203-1634188|CP030137.1_1735097-1735112|CP030137.1_1902154-1902169|CP030137.1_1902210-1902225|CP030137.1_2425838-2425823|CP030137.1_394105-394120|CP030137.1_821726-821741|CP030137.1_821785-821800|CP030137.1_978960-978945|CP030137.1_1158250-1158265|CP030137.1_1380063-1380078|CP030137.1_1853661-1853646	NA:NA	2,1	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|60aa|up_1|CP030137.1_39897_40077_+,NA	NA|205aa|up_9|CP030137.1_33615_34230_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|CP030137.1_34222_35473_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|CP030137.1_35488_36502_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|CP030137.1_36470_37049_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|CP030137.1_37045_37624_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|CP030137.1_37616_38321_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|CP030137.1_38317_39076_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|CP030137.1_39072_39705_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|CP030137.1_39897_40077_+	NA	NA|681aa|up_0|CP030137.1_40797_42840_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|CP030137.1_43286_44339_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|CP030137.1_44325_45198_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|CP030137.1_45194_45500_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|CP030137.1_45463_46702_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|CP030137.1_46865_47426_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|CP030137.1_48274_48937_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|CP030137.1_48953_49646_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|CP030137.1_49642_50410_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|CP030137.1_50644_51145_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|CP030137.1_51147_51624_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	2	483344-483537	1	CRT	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	8	483367-483399|483367-483399|483423-483458|483423-483458|483423-483458|483482-483514|483482-483514|483482-483514	CP030137.1_207586-207618|CP030137.1_1426142-1426110|CP030137.1_979032-978997|CP030137.1_810962-810997|CP030137.1_1158291-1158326|CP030137.1_207586-207618|CP030137.1_1336832-1336864|CP030137.1_1426142-1426110	NA	3	3	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|57aa|down_0|CP030137.1_483596_483767_-,NA|84aa|down_5|CP030137.1_486906_487158_-,NA|106aa|down_8|CP030137.1_492282_492600_-,NA|55aa|down_9|CP030137.1_492844_493009_-	NA|202aa|up_9|CP030137.1_476238_476844_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|CP030137.1_477013_478018_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|CP030137.1_478048_478555_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|CP030137.1_478556_479051_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|CP030137.1_479113_480373_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|CP030137.1_480369_480855_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|CP030137.1_480868_481315_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|CP030137.1_481320_481554_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|CP030137.1_481560_482160_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|CP030137.1_482179_483202_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|CP030137.1_483596_483767_-	NA	NA|117aa|down_1|CP030137.1_483892_484243_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|CP030137.1_484344_485556_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|CP030137.1_485548_485989_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|CP030137.1_486150_486915_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|CP030137.1_486906_487158_-	NA	NA|422aa|down_6|CP030137.1_487546_488812_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|CP030137.1_488928_492096_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|CP030137.1_492282_492600_-	NA	NA|55aa|down_9|CP030137.1_492844_493009_-	NA
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	3	586531-586681	2	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_3|CP030137.1_583891_583984_-,NA|35aa|up_0|CP030137.1_586094_586199_+,NA|364aa|down_0|CP030137.1_586698_587790_-,NA|77aa|down_5|CP030137.1_591578_591809_+	NA|145aa|up_9|CP030137.1_574610_575045_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_8|CP030137.1_575056_577189_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_7|CP030137.1_577223_578762_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_6|CP030137.1_579442_581248_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|CP030137.1_581479_582262_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|CP030137.1_582329_583187_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|CP030137.1_583891_583984_-	NA	NA|379aa|up_2|CP030137.1_584271_585408_+	pfam02037, SAP, SAP domain	NA|68aa|up_1|CP030137.1_585466_585670_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|35aa|up_0|CP030137.1_586094_586199_+	NA	NA|364aa|down_0|CP030137.1_586698_587790_-	NA	NA|327aa|down_1|CP030137.1_588055_589036_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|CP030137.1_589037_589358_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|CP030137.1_589509_590175_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|CP030137.1_590609_591548_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|CP030137.1_591578_591809_+	NA	NA|458aa|down_6|CP030137.1_592480_593854_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|CP030137.1_594311_594725_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|CP030137.1_594924_595368_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|CP030137.1_595488_596199_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	4	1634217-1634403	2	CRT	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TCTATGTTGGGGCCCCGCC	19	3	23	1634236-1634272|1634236-1634272|1634236-1634272|1634236-1634272|1634236-1634272|1634236-1634272|1634236-1634272|1634236-1634272|1634236-1634272|1634292-1634328|1634292-1634328|1634292-1634328|1634292-1634328|1634292-1634328|1634292-1634328|1634292-1634328|1634292-1634328|1634292-1634328|1634348-1634384|1634348-1634384|1634348-1634384|1634348-1634384|1634348-1634384	CP030137.1_820292-820256|CP030137.1_1336930-1336894|CP030137.1_1426044-1426080|CP030137.1_2034222-2034258|CP030137.1_2035228-2035192|CP030137.1_2151053-2151089|CP030137.1_2650194-2650230|CP030137.1_317277-317241|CP030137.1_1708924-1708888|CP030137.1_1426102-1426138|CP030137.1_1735120-1735084|CP030137.1_2425815-2425851|CP030137.1_207626-207590|CP030137.1_821749-821713|CP030137.1_1158273-1158237|CP030137.1_1336872-1336836|CP030137.1_821808-821772|CP030137.1_1634180-1634216|CP030137.1_978992-979028|CP030137.1_291958-291994|CP030137.1_811002-810966|CP030137.1_1158331-1158295|CP030137.1_1902503-1902467	NA	3	3	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|76aa|up_6|CP030137.1_1626975_1627203_-,NA|75aa|down_0|CP030137.1_1634558_1634783_-,NA|49aa|down_1|CP030137.1_1634739_1634886_-,NA|78aa|down_3|CP030137.1_1636994_1637228_+,NA|73aa|down_4|CP030137.1_1637421_1637640_+,NA|62aa|down_5|CP030137.1_1637849_1638035_+,NA|47aa|down_6|CP030137.1_1638346_1638487_-,NA|169aa|down_9|CP030137.1_1640116_1640623_-	NA|45aa|up_9|CP030137.1_1624240_1624375_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|CP030137.1_1625286_1625475_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|CP030137.1_1625723_1626671_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|CP030137.1_1626975_1627203_-	NA	NA|502aa|up_5|CP030137.1_1627510_1629016_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|CP030137.1_1629238_1630171_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|CP030137.1_1630193_1631195_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|CP030137.1_1631632_1632358_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|CP030137.1_1632452_1633178_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|CP030137.1_1633285_1634002_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|CP030137.1_1634558_1634783_-	NA	NA|49aa|down_1|CP030137.1_1634739_1634886_-	NA	NA|320aa|down_2|CP030137.1_1635558_1636518_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|CP030137.1_1636994_1637228_+	NA	NA|73aa|down_4|CP030137.1_1637421_1637640_+	NA	NA|62aa|down_5|CP030137.1_1637849_1638035_+	NA	NA|47aa|down_6|CP030137.1_1638346_1638487_-	NA	NA|117aa|down_7|CP030137.1_1638856_1639207_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_8|CP030137.1_1639360_1639858_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_9|CP030137.1_1640116_1640623_-	NA
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	5	1638253-1638497	3	CRT	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCCCGCCAACTTGCANNNT	19	1	1	1638442-1638478	CP030137.1_1638498-1638534	NA	4	4	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|75aa|up_5|CP030137.1_1634558_1634783_-,NA|49aa|up_4|CP030137.1_1634739_1634886_-,NA|78aa|up_2|CP030137.1_1636994_1637228_+,NA|73aa|up_1|CP030137.1_1637421_1637640_+,NA|62aa|up_0|CP030137.1_1637849_1638035_+,NA|169aa|down_2|CP030137.1_1640116_1640623_-,NA|31aa|down_4|CP030137.1_1641655_1641748_+,NA|56aa|down_6|CP030137.1_1642587_1642755_-	NA|334aa|up_9|CP030137.1_1630193_1631195_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_8|CP030137.1_1631632_1632358_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_7|CP030137.1_1632452_1633178_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_6|CP030137.1_1633285_1634002_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_5|CP030137.1_1634558_1634783_-	NA	NA|49aa|up_4|CP030137.1_1634739_1634886_-	NA	NA|320aa|up_3|CP030137.1_1635558_1636518_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|up_2|CP030137.1_1636994_1637228_+	NA	NA|73aa|up_1|CP030137.1_1637421_1637640_+	NA	NA|62aa|up_0|CP030137.1_1637849_1638035_+	NA	NA|117aa|down_0|CP030137.1_1638856_1639207_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|CP030137.1_1639360_1639858_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|CP030137.1_1640116_1640623_-	NA	NA|134aa|down_3|CP030137.1_1641294_1641696_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_4|CP030137.1_1641655_1641748_+	NA	NA|110aa|down_5|CP030137.1_1642064_1642394_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_6|CP030137.1_1642587_1642755_-	NA	NA|168aa|down_7|CP030137.1_1642882_1643386_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_8|CP030137.1_1643378_1643966_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_9|CP030137.1_1643977_1644778_-	PRK00865, PRK00865, glutamate racemase; Provisional
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	6	1902483-1902564	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1902507-1902540|1902507-1902540	CP030137.1_1336877-1336910|CP030137.1_1426097-1426064	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|38aa|up_0|CP030137.1_1902079_1902193_-,NA|38aa|down_1|CP030137.1_1903547_1903661_-	NA|436aa|up_9|CP030137.1_1894266_1895574_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|CP030137.1_1895671_1896433_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_7|CP030137.1_1896760_1897612_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_6|CP030137.1_1897844_1898039_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_5|CP030137.1_1898392_1899214_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_4|CP030137.1_1899231_1899927_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_3|CP030137.1_1899919_1900945_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_2|CP030137.1_1901194_1901491_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_1|CP030137.1_1901483_1901870_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|38aa|up_0|CP030137.1_1902079_1902193_-	NA	NA|293aa|down_0|CP030137.1_1902667_1903546_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|CP030137.1_1903547_1903661_-	NA	NA|127aa|down_2|CP030137.1_1903724_1904105_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|CP030137.1_1904262_1904619_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|CP030137.1_1904762_1905083_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|CP030137.1_1905232_1905772_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|CP030137.1_1905854_1906571_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|CP030137.1_1906718_1907141_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|CP030137.1_1907539_1908034_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|CP030137.1_1908188_1908806_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	7	1980504-1980596	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|153aa|up_6|CP030137.1_1972033_1972492_-,NA|70aa|down_6|CP030137.1_1987713_1987923_+	NA|791aa|up_9|CP030137.1_1968471_1970844_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|CP030137.1_1970877_1971618_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|CP030137.1_1971733_1971967_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|CP030137.1_1972033_1972492_-	NA	NA|435aa|up_5|CP030137.1_1972831_1974136_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|CP030137.1_1974265_1975783_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|CP030137.1_1975785_1976547_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|CP030137.1_1976668_1977859_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|CP030137.1_1977997_1979008_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|CP030137.1_1979060_1980074_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|CP030137.1_1980833_1981463_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|CP030137.1_1982165_1983068_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|CP030137.1_1983310_1983898_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|CP030137.1_1984470_1985415_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|CP030137.1_1985524_1986520_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|CP030137.1_1986516_1987428_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|70aa|down_6|CP030137.1_1987713_1987923_+	NA	NA|312aa|down_7|CP030137.1_1988249_1989185_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_8|CP030137.1_1989251_1990691_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|150aa|down_9|CP030137.1_1990698_1991148_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	8	1987664-1987888	2,5	PILER-CR,CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	TCTG-----TGTTGGGGCCCC,AAAGTCAGCTTACAATAATGTGCAAGTTGG	21,30	3	12	1987680-1987721|1987680-1987721|1987680-1987721|1987680-1987721|1987680-1987721|1987680-1987721|1987680-1987721|1987794-1987833|1987833-1987858|1987833-1987858|1987833-1987858|1987833-1987858	CP030137.1_1336778-1336819|CP030137.1_1426196-1426155|CP030137.1_1708830-1708871|CP030137.1_291994-291953|CP030137.1_820315-820356|CP030137.1_1158295-1158336|CP030137.1_1980472-1980513|CP030137.1_821772-821811|CP030137.1_1634233-1634208|CP030137.1_2024830-2024805|CP030137.1_1853691-1853666|CP030137.1_2024774-2024749	NA:NA	3,1	3	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|254aa|up_9|CP030137.1_1975785_1976547_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|CP030137.1_1976668_1977859_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|CP030137.1_1977997_1979008_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|CP030137.1_1979060_1980074_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|CP030137.1_1980833_1981463_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|CP030137.1_1982165_1983068_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|CP030137.1_1983310_1983898_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|CP030137.1_1984470_1985415_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|CP030137.1_1985524_1986520_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|CP030137.1_1986516_1987428_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|CP030137.1_1988249_1989185_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|CP030137.1_1989251_1990691_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|150aa|down_2|CP030137.1_1990698_1991148_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|CP030137.1_1991155_1991995_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|CP030137.1_1992000_1992933_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|CP030137.1_1993539_1996386_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|CP030137.1_1996393_1998379_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|CP030137.1_1998647_1998884_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|CP030137.1_1998880_1999531_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|CP030137.1_1999704_2000544_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	9	1993170-1993250	6	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	8	1993196-1993224|1993196-1993224|1993196-1993224|1993196-1993224|1993196-1993224|1993196-1993224|1993196-1993224|1993196-1993224	CP030137.1_979025-978997|CP030137.1_2425679-2425651|CP030137.1_2425734-2425706|CP030137.1_291991-291963|CP030137.1_810969-810997|CP030137.1_1158298-1158326|CP030137.1_1834138-1834166|CP030137.1_1902470-1902498	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA|70aa|up_5|CP030137.1_1987713_1987923_+,NA|36aa|down_5|CP030137.1_2000691_2000799_-,NA|35aa|down_7|CP030137.1_2002231_2002336_-	NA|196aa|up_9|CP030137.1_1983310_1983898_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_8|CP030137.1_1984470_1985415_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_7|CP030137.1_1985524_1986520_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_6|CP030137.1_1986516_1987428_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|70aa|up_5|CP030137.1_1987713_1987923_+	NA	NA|312aa|up_4|CP030137.1_1988249_1989185_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|CP030137.1_1989251_1990691_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|150aa|up_2|CP030137.1_1990698_1991148_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|CP030137.1_1991155_1991995_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|CP030137.1_1992000_1992933_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|CP030137.1_1993539_1996386_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|CP030137.1_1996393_1998379_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|CP030137.1_1998647_1998884_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|CP030137.1_1998880_1999531_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|CP030137.1_1999704_2000544_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|CP030137.1_2000691_2000799_-	NA	NA|370aa|down_6|CP030137.1_2000952_2002063_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|CP030137.1_2002231_2002336_-	NA	NA|844aa|down_8|CP030137.1_2002377_2004909_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|CP030137.1_2005322_2005895_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	10	2087105-2087203	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCCCTTTTAATTTATTAATTAGGGGCTCTT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|100aa|up_5|CP030137.1_2083124_2083424_-,NA|230aa|up_2|CP030137.1_2084593_2085283_+,NA|39aa|down_2|CP030137.1_2089058_2089175_-	NA|228aa|up_9|CP030137.1_2080694_2081378_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|153aa|up_8|CP030137.1_2081380_2081839_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_7|CP030137.1_2081840_2082407_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_6|CP030137.1_2082502_2083045_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_5|CP030137.1_2083124_2083424_-	NA	NA|132aa|up_4|CP030137.1_2083561_2083957_-	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|148aa|up_3|CP030137.1_2084023_2084467_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_2|CP030137.1_2084593_2085283_+	NA	NA|163aa|up_1|CP030137.1_2085381_2085870_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|up_0|CP030137.1_2085866_2087087_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|CP030137.1_2087287_2088154_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|CP030137.1_2088269_2088914_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|CP030137.1_2089058_2089175_-	NA	NA|158aa|down_3|CP030137.1_2089266_2089740_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|CP030137.1_2089739_2090456_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|CP030137.1_2090645_2091005_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|717aa|down_6|CP030137.1_2091150_2093301_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|CP030137.1_2093997_2094642_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|CP030137.1_2095002_2095800_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|CP030137.1_2096387_2097395_-	pfam01384, PHO4, Phosphate transporter family
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	11	2150136-2150229	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	GGCTTTTATGCAGTTGCTGCACAAACAA	28	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|CP030137.1_2144963_2145680_-,NA|169aa|up_4|CP030137.1_2145841_2146348_-,NA|103aa|down_1|CP030137.1_2151115_2151424_+,NA|36aa|down_4|CP030137.1_2153535_2153643_-	NA|75aa|up_9|CP030137.1_2141086_2141311_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|CP030137.1_2141505_2142435_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|CP030137.1_2143382_2143757_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|CP030137.1_2144007_2144796_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|CP030137.1_2144963_2145680_-	NA	NA|169aa|up_4|CP030137.1_2145841_2146348_-	NA	NA|267aa|up_3|CP030137.1_2146483_2147284_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|CP030137.1_2147267_2147987_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|CP030137.1_2148041_2148992_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|CP030137.1_2149139_2149967_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|CP030137.1_2150344_2150980_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|103aa|down_1|CP030137.1_2151115_2151424_+	NA	NA|554aa|down_2|CP030137.1_2151368_2153030_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_3|CP030137.1_2153026_2153410_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_4|CP030137.1_2153535_2153643_-	NA	NA|337aa|down_5|CP030137.1_2153717_2154728_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_6|CP030137.1_2155226_2155748_-	pfam08741, YwhD, YwhD family	NA|432aa|down_7|CP030137.1_2155775_2157071_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_8|CP030137.1_2157110_2157587_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_9|CP030137.1_2157755_2158292_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]
GCA_004136235.1_ASM413623v1	CP030137	Staphylococcus aureus strain M51 chromosome, complete genome	12	2387092-2387193	9	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|80aa|up_9|CP030137.1_2376661_2376901_+,NA|179aa|up_6|CP030137.1_2378709_2379246_+,NA|86aa|down_0|CP030137.1_2387400_2387658_+,NA|34aa|down_1|CP030137.1_2387865_2387967_-,NA|98aa|down_6|CP030137.1_2392963_2393257_+,NA|128aa|down_8|CP030137.1_2394210_2394594_+	NA|80aa|up_9|CP030137.1_2376661_2376901_+	NA	NA|91aa|up_8|CP030137.1_2376941_2377214_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_7|CP030137.1_2377612_2378317_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_6|CP030137.1_2378709_2379246_+	NA	NA|514aa|up_5|CP030137.1_2379358_2380900_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_4|CP030137.1_2380924_2382391_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_3|CP030137.1_2382428_2383697_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_2|CP030137.1_2383696_2384275_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_1|CP030137.1_2384787_2385195_+	pfam11181, YflT, Heat induced stress protein YflT	NA|319aa|up_0|CP030137.1_2386118_2387075_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|86aa|down_0|CP030137.1_2387400_2387658_+	NA	NA|34aa|down_1|CP030137.1_2387865_2387967_-	NA	NA|466aa|down_2|CP030137.1_2388051_2389449_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|CP030137.1_2389529_2390285_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|CP030137.1_2390776_2391346_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|CP030137.1_2391361_2392885_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_6|CP030137.1_2392963_2393257_+	NA	NA|209aa|down_7|CP030137.1_2393329_2393956_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_8|CP030137.1_2394210_2394594_+	NA	NA|194aa|down_9|CP030137.1_2394659_2395241_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
