The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	678735	723886	4859678	head,integrase,portal,terminase,tail,capsid,holin,tRNA	Cronobacter_phage(66.67%)	53	672801:672821	722601:722621
672801:672821	attL	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
QAZ22291.1|678735_680301_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.9	1.7e-12
QAZ22292.1|680297_680945_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ22293.1|681176_681944_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QAZ22294.1|682201_683983_-	ATP-binding protein	NA	X2KLG0	Campylobacter_phage	23.2	6.4e-08
QAZ22295.1|683972_685010_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	63.9	1.5e-121
QAZ22296.1|685013_685580_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	32.2	7.5e-19
QAZ22297.1|685596_686178_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	37.2	1.2e-27
QAZ22298.1|686321_686543_+	regulator	NA	NA	NA	NA	NA
QAZ22299.1|686573_687077_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QAZ22300.1|687086_687314_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22301.1|687303_687729_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QAZ22302.1|687728_688130_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
QAZ22303.1|688197_688431_+	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
QAZ22304.1|688421_689282_+	adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	1.1e-130
QAZ22305.1|689278_691300_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.5	7.9e-297
QAZ22306.1|691419_691626_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22307.1|691599_691923_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QAZ22308.1|691919_692981_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.8	6.7e-162
QAZ22309.1|692977_694753_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
QAZ22310.1|694913_695717_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
QAZ22311.1|695778_696801_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
QAZ22312.1|696804_697506_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
QAZ22313.1|697551_698055_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QAZ22314.1|698051_698558_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
QAZ22315.1|698554_699262_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	1.3e-100
QAZ22316.1|699258_700386_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QAZ22317.1|700382_700838_+	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QAZ22318.1|700847_701141_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QAZ22319.1|701137_701479_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAZ22320.1|701478_701811_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	1.5e-35
QAZ22321.1|701782_701971_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	77.4	1.5e-21
QAZ22322.1|701957_702215_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QAZ22323.1|702402_704373_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.8	3.2e-274
QAZ22324.1|704369_704699_+	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QAZ22325.1|704695_705880_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QAZ22326.1|705866_706460_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
QAZ22327.1|706469_708704_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	7.2e-182
QAZ22328.1|708716_709271_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	2.7e-90
QAZ22329.1|709260_709986_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	53.5	3.7e-63
QAZ22330.1|709957_710503_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
QAZ22331.1|710502_712206_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	9.9e-224
QAZ22332.1|712986_713172_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22333.1|713279_713906_+	reverse transcriptase	NA	NA	NA	NA	NA
QAZ22334.1|714229_714736_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QAZ22335.1|714859_716842_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	9.0e-35
QAZ22336.1|716856_718602_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QAZ22337.1|718837_719053_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QAZ22338.1|719280_720294_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
QAZ22339.1|720197_720536_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ22340.1|720543_721155_-	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA	NA
QAZ22341.1|721261_721621_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
QAZ22342.1|721718_722540_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
QAZ22343.1|722644_723886_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.9	6.5e-92
722601:722621	attR	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
>prophage 2
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	1202917	1264651	4859678	head,integrase,portal,terminase,tail,capsid,holin,tRNA	Cronobacter_phage(76.32%)	60	1204293:1204340	1235969:1236016
QAZ22805.1|1202917_1204111_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.6	2.6e-106
1204293:1204340	attL	ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
QAZ22806.1|1204456_1205467_-|integrase	integrase	integrase	F1BUN9	Cronobacter_phage	85.7	9.5e-174
QAZ22807.1|1205466_1206033_-	Repressor protein CI	NA	F1BUN8	Cronobacter_phage	59.7	1.1e-65
QAZ22808.1|1206178_1206382_+	hypothetical protein	NA	F1BUN7	Cronobacter_phage	52.0	1.0e-10
QAZ22809.1|1206419_1206923_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	71.3	1.5e-58
QAZ22810.1|1206932_1207160_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22811.1|1207149_1207575_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QAZ22812.1|1207574_1207976_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
QAZ22813.1|1208043_1208274_+	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
QAZ22814.1|1208264_1208594_+	DUF3850 domain-containing protein	NA	Q2P9X4	Enterobacteria_phage	45.2	2.0e-11
QAZ22815.1|1208583_1209417_+	adenine methylase	NA	F1BUN1	Cronobacter_phage	68.3	1.6e-105
QAZ22816.1|1209413_1211435_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.9	1.9e-298
QAZ22817.1|1211547_1211766_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	49.1	3.6e-06
QAZ22818.1|1211739_1212063_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QAZ22819.1|1212059_1213121_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.1	6.0e-163
QAZ22820.1|1213117_1214893_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
QAZ22821.1|1215053_1215857_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
QAZ22822.1|1215918_1216941_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
QAZ22823.1|1216944_1217646_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
QAZ22824.1|1217691_1218195_+|head	head completion protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QAZ22825.1|1218191_1218698_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
QAZ22826.1|1218694_1219402_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.9	6.8e-102
QAZ22827.1|1219398_1220526_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QAZ22828.1|1220522_1220978_+	DUF2597 domain-containing protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QAZ22829.1|1220987_1221281_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QAZ22830.1|1221277_1221619_+	hypothetical protein	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAZ22831.1|1221618_1221951_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	6.7e-36
QAZ22832.1|1221922_1222111_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	80.6	1.1e-22
QAZ22833.1|1222097_1222355_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QAZ22834.1|1222542_1224513_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	68.8	9.2e-266
QAZ22835.1|1224509_1224839_+	DUF2590 domain-containing protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QAZ22836.1|1224835_1226020_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QAZ22837.1|1226006_1226600_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.1	1.1e-89
QAZ22838.1|1226609_1228715_+|tail	phage tail protein	tail	S4TP62	Salmonella_phage	69.0	8.8e-198
QAZ26259.1|1228823_1229282_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	93.2	1.6e-75
QAZ22839.1|1229271_1229997_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.0	5.5e-67
QAZ22840.1|1229968_1230514_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
QAZ22841.1|1230513_1232217_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	4.9e-223
QAZ22842.1|1232897_1234016_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22843.1|1235641_1235890_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ26260.1|1236405_1237569_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
1235969:1236016	attR	ATTTGGTGGAGCTGGCGGGAGTTGAACCCGCGTCCGAAATTCCTACAT	NA	NA	NA	NA
QAZ22844.1|1237576_1239757_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	9.9e-19
QAZ22845.1|1239753_1241163_-	type I secretion protein TolC	NA	NA	NA	NA	NA
QAZ22846.1|1241227_1252393_-	Ig-like domain repeat protein	NA	NA	NA	NA	NA
QAZ26261.1|1253006_1253489_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
QAZ22847.1|1253638_1254115_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
QAZ22848.1|1254104_1254395_+	RnfH family protein	NA	NA	NA	NA	NA
QAZ22849.1|1254560_1254899_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QAZ22850.1|1255047_1256709_-	DNA repair protein RecN	NA	NA	NA	NA	NA
QAZ22851.1|1256794_1257673_-	NAD(+) kinase	NA	NA	NA	NA	NA
QAZ26262.1|1257604_1257799_+	molecular chaperone GrpE	NA	NA	NA	NA	NA
QAZ22852.1|1257795_1258386_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
QAZ22853.1|1258420_1259026_-	cytoplasmic protein	NA	NA	NA	NA	NA
QAZ22854.1|1259146_1260388_-	magnesium/cobalt efflux protein	NA	NA	NA	NA	NA
QAZ22855.1|1260452_1261244_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
QAZ22856.1|1261189_1261486_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ22857.1|1261409_1262771_+	signal recognition particle protein	NA	NA	NA	NA	NA
QAZ22858.1|1263023_1263272_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
QAZ22859.1|1263290_1263839_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
QAZ22860.1|1263883_1264651_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
>prophage 3
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	1291644	1398803	4859678	transposase,head,integrase,protease,portal,terminase,tail,capsid,holin,lysis,tRNA	Salmonella_phage(34.38%)	117	1283736:1283752	1374243:1374259
1283736:1283752	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QAZ22881.1|1291644_1292682_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAZ22882.1|1292797_1293487_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAZ22883.1|1293805_1294189_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAZ22884.1|1294250_1294838_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAZ26264.1|1294940_1295840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ22885.1|1295857_1297192_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAZ22886.1|1297321_1298059_+|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
QAZ22887.1|1298043_1299666_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAZ22888.1|1299750_1299930_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22889.1|1300090_1300666_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAZ22890.1|1300697_1301348_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAZ22891.1|1301347_1302304_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAZ22892.1|1302300_1302780_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
QAZ22893.1|1302809_1302926_+	transcriptional regulator	NA	NA	NA	NA	NA
QAZ22894.1|1303277_1304507_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.1	4.9e-233
QAZ22895.1|1304484_1304769_-	excisionase	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAZ22896.1|1304809_1305049_-	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ22897.1|1305091_1306249_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.2	1.5e-215
QAZ22898.1|1306211_1309139_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
QAZ22899.1|1309265_1309616_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAZ22900.1|1309637_1309796_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAZ22901.1|1310252_1310915_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ22902.1|1310914_1311301_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ22903.1|1311293_1312133_-	chromosome partitioning protein ParA	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
QAZ22904.1|1312191_1312587_-	transcriptional regulator	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
QAZ22905.1|1312686_1312929_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
QAZ22906.1|1312888_1313263_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
QAZ22907.1|1313354_1314239_+	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
QAZ22908.1|1314235_1314931_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
QAZ22909.1|1314944_1315643_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
QAZ22910.1|1315750_1316383_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22911.1|1316625_1316859_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
QAZ22912.1|1316975_1317224_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
QAZ22913.1|1317258_1317861_+	hypothetical protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
QAZ22914.1|1317860_1318067_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAZ22915.1|1318069_1318681_+	protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.5	1.8e-90
QAZ22916.1|1318677_1318818_+	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAZ22917.1|1318814_1319492_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAZ22918.1|1319488_1319674_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22919.1|1319764_1320328_+	hypothetical protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAZ22920.1|1320834_1321023_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22921.1|1321237_1321924_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAZ26265.1|1322199_1322529_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ22922.1|1322512_1322965_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
QAZ26266.1|1322982_1323435_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAZ22923.1|1323670_1324072_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAZ22924.1|1324106_1324301_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22925.1|1324358_1324904_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAZ22926.1|1324875_1326807_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAZ22927.1|1326790_1326994_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAZ22928.1|1326990_1328571_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAZ22929.1|1328560_1330057_+	scaffolding protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAZ22930.1|1330069_1330417_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAZ22931.1|1330471_1331500_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAZ22932.1|1331557_1331917_+	DNA packaging protein	NA	NA	NA	NA	NA
QAZ22933.1|1331927_1332311_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAZ22934.1|1332338_1332917_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAZ22935.1|1332965_1334216_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	7.8e-218
QAZ22936.1|1334204_1334606_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAZ22937.1|1334613_1335360_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
QAZ22938.1|1335410_1335806_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAZ22939.1|1335802_1336141_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAZ22940.1|1336112_1339208_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
QAZ22941.1|1339210_1339540_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAZ22942.1|1339549_1340248_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAZ22943.1|1340254_1340992_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAZ22944.1|1340889_1341537_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAZ22945.1|1341598_1344961_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAZ22946.1|1344999_1345242_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22947.1|1345295_1347668_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAZ22948.1|1347664_1348489_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAZ22949.1|1348478_1349057_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAZ22950.1|1349153_1349381_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ22951.1|1349487_1349700_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAZ26267.1|1349762_1349828_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ22952.1|1350492_1351038_-|transposase	transposase	transposase	NA	NA	NA	NA
QAZ22953.1|1351284_1351422_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ22954.1|1351918_1353412_-	type III secretion system protein	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAZ22955.1|1353816_1355616_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAZ22956.1|1355632_1356607_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QAZ22957.1|1356880_1357561_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAZ22958.1|1357557_1358463_+	GTPase Era	NA	NA	NA	NA	NA
QAZ22959.1|1358474_1359203_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAZ22960.1|1359214_1359946_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAZ22961.1|1359945_1360326_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAZ22962.1|1360437_1360698_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
QAZ22963.1|1360735_1361662_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	1.8e-09
QAZ22964.1|1361777_1362974_+	MFS transporter	NA	NA	NA	NA	NA
QAZ22965.1|1362995_1363913_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
QAZ22966.1|1363951_1364800_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ22967.1|1364915_1365809_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QAZ22968.1|1365819_1367181_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAZ22969.1|1367184_1367820_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAZ22970.1|1367844_1368396_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
QAZ22971.1|1368446_1369991_-	lytic transglycosylase F	NA	NA	NA	NA	NA
QAZ22972.1|1369991_1370222_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ22973.1|1370246_1374134_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	8.0e-128
QAZ22974.1|1374828_1376214_+	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	1.9e-15
1374243:1374259	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
QAZ22975.1|1376215_1376980_+	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
QAZ22976.1|1376976_1378314_+	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
QAZ22977.1|1378390_1378729_+	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
QAZ22978.1|1378777_1380238_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
QAZ22979.1|1380293_1382438_-	lysine decarboxylase inducible	NA	NA	NA	NA	NA
QAZ22980.1|1382520_1383852_-	lysine:cadaverine antiporter	NA	NA	NA	NA	NA
QAZ22981.1|1384212_1385757_-	transcriptional regulator CadC	NA	NA	NA	NA	NA
QAZ22982.1|1385938_1387129_-	flavohemoprotein	NA	NA	NA	NA	NA
QAZ22983.1|1387453_1388707_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
QAZ22984.1|1388902_1390042_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
QAZ22985.1|1390036_1391314_-	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
QAZ26268.1|1391439_1392078_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
QAZ22986.1|1392068_1393055_+	nickel transporter	NA	NA	NA	NA	NA
QAZ22987.1|1393055_1394069_-	anaerobic sulfite reductase subunit AsrC	NA	NA	NA	NA	NA
QAZ22988.1|1394079_1394898_-	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
QAZ22989.1|1394901_1395945_-	anaerobic sulfite reductase subunit AsrA	NA	NA	NA	NA	NA
QAZ22990.1|1396126_1397005_-	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	6.0e-15
QAZ22991.1|1397149_1397953_-	inositol-1-monophosphatase	NA	NA	NA	NA	NA
QAZ22992.1|1398071_1398803_+|tRNA	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
>prophage 4
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	1812304	1821475	4859678	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAZ23369.1|1812304_1813252_+	ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
QAZ23370.1|1813235_1813967_+	ABC transporter permease	NA	NA	NA	NA	NA
QAZ23371.1|1813947_1814055_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ23372.1|1814114_1814846_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAZ23373.1|1815068_1816754_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
QAZ23374.1|1816750_1817470_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAZ23375.1|1817516_1817984_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAZ23376.1|1818040_1818571_-	lipoprotein	NA	NA	NA	NA	NA
QAZ23377.1|1818742_1819201_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAZ23378.1|1819441_1821475_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 5
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	1889566	1900073	4859678		Enterobacteria_phage(37.5%)	10	NA	NA
QAZ23433.1|1889566_1890970_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
QAZ23434.1|1891147_1892041_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAZ23435.1|1892417_1893503_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAZ23436.1|1893502_1894402_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
QAZ26283.1|1894449_1895328_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
QAZ23437.1|1895328_1895880_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
QAZ23438.1|1895885_1896860_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAZ23439.1|1896875_1897649_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAZ23440.1|1897653_1898733_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
QAZ23441.1|1898759_1900073_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 6
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	1996604	2003855	4859678		Morganella_phage(33.33%)	9	NA	NA
QAZ23535.1|1996604_1997024_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAZ23536.1|1997026_1998295_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.2	1.4e-227
QAZ23537.1|1998749_1998962_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAZ26290.1|1998972_1999161_+	cold-shock protein	NA	NA	NA	NA	NA
QAZ23538.1|1999418_2000615_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	5.1e-110
QAZ23539.1|2000626_2000827_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ23540.1|2001264_2001576_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ23541.1|2001655_2002351_+	phosphohydrolase	NA	S4W232	Pandoravirus	28.0	2.8e-07
QAZ23542.1|2002424_2003855_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	2108893	2144010	4859678	tail,integrase,protease	Salmonella_phage(25.0%)	37	2110651:2110666	2125684:2125699
QAZ23656.1|2108893_2109973_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	8.7e-101
2110651:2110666	attL	CACTTCTTCTTTTTCA	NA	NA	NA	NA
QAZ23657.1|2111106_2111394_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	92.7	8.1e-38
QAZ23658.1|2112181_2112349_-	lytic enzyme	NA	NA	NA	NA	NA
QAZ23659.1|2112413_2112602_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ23660.1|2113074_2113956_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	74.9	1.4e-64
QAZ23661.1|2114052_2114253_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ23662.1|2114454_2114559_-|tail	phage tail protein	tail	NA	NA	NA	NA
QAZ23663.1|2114821_2114947_+	arsenic transporter	NA	NA	NA	NA	NA
QAZ23664.1|2115075_2115342_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ23665.1|2116094_2116709_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
QAZ23666.1|2116718_2116877_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ23667.1|2117009_2117924_-	protein PagO	NA	NA	NA	NA	NA
QAZ26295.1|2118541_2118742_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ23668.1|2119032_2119281_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ23669.1|2119218_2119587_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
QAZ23670.1|2121050_2121191_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ23671.1|2121355_2121625_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
QAZ23672.1|2121671_2121866_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ23673.1|2121994_2122414_+	N-acetyltransferase	NA	NA	NA	NA	NA
QAZ23674.1|2125486_2126500_-	acyltransferase	NA	NA	NA	NA	NA
2125684:2125699	attR	TGAAAAAGAAGAAGTG	NA	NA	NA	NA
QAZ23675.1|2127196_2127400_-	fimbrial protein	NA	NA	NA	NA	NA
QAZ23676.1|2127583_2127868_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ23677.1|2129027_2129237_+	chemotaxis protein	NA	NA	NA	NA	NA
QAZ23678.1|2129464_2129941_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ23679.1|2130256_2130652_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
QAZ23680.1|2131335_2132058_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
QAZ23681.1|2132342_2132507_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ23682.1|2132730_2133381_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	2.7e-57
QAZ23683.1|2133399_2133591_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
QAZ23684.1|2133701_2133941_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
QAZ26296.1|2134055_2135495_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
QAZ23685.1|2135572_2138212_-	MCE family protein	NA	NA	NA	NA	NA
QAZ23686.1|2138174_2139458_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ23687.1|2139499_2140084_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
QAZ23688.1|2140181_2140868_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
QAZ23689.1|2140887_2142936_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
QAZ23690.1|2143128_2144010_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 8
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	2902238	3030474	4859678	head,integrase,protease,portal,tail,holin,lysis,tRNA	Salmonella_phage(51.89%)	158	2969831:2969850	3041626:3041645
QAZ26328.1|2902238_2902559_-	hypothetical protein	NA	E5G6P3	Salmonella_phage	76.6	1.2e-08
QAZ24444.1|2902776_2903652_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA	NA
QAZ24445.1|2903873_2904554_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	9.8e-82
QAZ24446.1|2904942_2905209_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	78.4	7.3e-33
QAZ24447.1|2905265_2905913_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26329.1|2905955_2906153_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	97.0	1.4e-09
QAZ24448.1|2906778_2907171_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	8.5e-14
QAZ24449.1|2907280_2907889_-	DUF4376 domain-containing protein	NA	S5MBX6	Escherichia_phage	44.7	1.1e-31
QAZ24450.1|2907951_2908137_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24451.1|2908385_2908904_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	53.8	2.0e-47
QAZ24452.1|2908918_2910451_-|tail	phage tail protein	tail	S4TP62	Salmonella_phage	66.2	1.4e-128
QAZ24453.1|2910450_2911131_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.0	5.5e-125
QAZ24454.1|2911127_2912327_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	96.7	5.5e-213
QAZ24455.1|2912327_2912681_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	95.7	3.0e-58
QAZ24456.1|2912680_2913433_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	69.8	9.7e-91
QAZ24457.1|2913551_2914007_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24458.1|2914090_2914423_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.1	1.7e-23
QAZ24459.1|2914419_2915487_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	91.5	2.0e-174
QAZ24460.1|2915489_2915792_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
QAZ24461.1|2915791_2916367_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
QAZ24462.1|2916366_2918376_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	95.2	0.0e+00
QAZ26330.1|2918365_2918542_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	72.9	4.7e-12
QAZ24463.1|2918553_2919006_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	78.7	1.3e-61
QAZ24464.1|2919009_2919453_-	DUF3277 domain-containing protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	1.0e-55
QAZ24465.1|2919465_2920611_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.3	1.2e-164
QAZ24466.1|2920614_2921178_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	78.7	2.1e-82
QAZ24467.1|2921152_2921542_-|head,tail	head-tail adaptor	head,tail	A0A0M3ULK0	Salmonella_phage	98.4	2.1e-68
QAZ24468.1|2921528_2922083_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.4e-94
QAZ24469.1|2922079_2922487_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	3.0e-70
QAZ24470.1|2922452_2922842_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	62.0	4.0e-32
QAZ24471.1|2922883_2923825_-	hypothetical protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	3.1e-179
QAZ24472.1|2923836_2924334_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
QAZ24473.1|2924338_2925571_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.3	3.7e-228
QAZ26331.1|2925574_2926114_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	91.0	4.5e-82
QAZ24474.1|2926205_2927675_-	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.3e-280
QAZ24475.1|2927674_2929297_-	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	99.4	0.0e+00
QAZ24476.1|2929299_2929929_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.1	1.5e-108
QAZ26332.1|2930429_2930885_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	76.8	1.3e-53
QAZ24477.1|2931202_2931742_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	74.1	4.0e-78
QAZ26333.1|2931719_2932022_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAZ24478.1|2932224_2932413_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24479.1|2932805_2933384_-	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
QAZ24480.1|2933380_2933674_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
QAZ24481.1|2933670_2934267_-	DUF1367 domain-containing protein	NA	H9C173	Pectobacterium_phage	73.7	1.5e-81
QAZ24482.1|2934335_2934527_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24483.1|2934710_2935049_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
QAZ24484.1|2935048_2935219_-	methyltransferase	NA	I6S1S6	Salmonella_phage	87.5	6.3e-06
QAZ24485.1|2935215_2935818_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.7e-98
QAZ24486.1|2935810_2936059_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24487.1|2936062_2936743_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24488.1|2936780_2938169_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	47.1	1.2e-105
QAZ24489.1|2938165_2939146_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	80.6	2.3e-44
QAZ24490.1|2939148_2939373_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
QAZ24491.1|2939395_2939842_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	5.5e-25
QAZ26334.1|2939776_2939992_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24492.1|2939906_2940140_-	XRE family transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	48.6	6.2e-12
QAZ24493.1|2940238_2940703_+	transcriptional regulator	NA	A0A0U2QW76	Escherichia_phage	51.7	2.7e-35
QAZ24494.1|2941387_2941711_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24495.1|2941718_2941964_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
QAZ24496.1|2941993_2944258_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	34.7	1.5e-102
QAZ24497.1|2944254_2944809_+	hypothetical protein	NA	H9C156	Pectobacterium_phage	59.3	1.3e-47
QAZ24498.1|2944811_2944994_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24499.1|2945043_2945241_+	hypothetical protein	NA	H9C154	Pectobacterium_phage	58.5	8.3e-10
QAZ24500.1|2945206_2945431_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
QAZ24501.1|2945431_2946451_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	53.5	1.2e-91
QAZ24502.1|2947038_2947698_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
QAZ24503.1|2947784_2948114_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAZ24504.1|2948110_2948392_-	acylphosphatase	NA	NA	NA	NA	NA
QAZ24505.1|2948440_2949220_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ24506.1|2949245_2949794_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAZ24507.1|2950008_2951220_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAZ24508.1|2951277_2951595_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAZ24509.1|2951639_2952056_-	CoA-binding protein	NA	NA	NA	NA	NA
QAZ24510.1|2952226_2952889_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24511.1|2952983_2953442_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAZ24512.1|2953477_2955532_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	1.1e-19
QAZ24513.1|2955655_2956102_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAZ24514.1|2956120_2958274_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAZ24515.1|2958260_2958866_-	DNA transformation protein	NA	NA	NA	NA	NA
QAZ24516.1|2959082_2959592_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAZ24517.1|2959948_2961001_+	porin OmpA	NA	NA	NA	NA	NA
QAZ24518.1|2961072_2961525_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAZ24519.1|2961710_2963471_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAZ24520.1|2963539_2964058_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAZ24521.1|2964157_2964325_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAZ24522.1|2964580_2965144_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24523.1|2965140_2966781_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
QAZ24524.1|2966785_2968039_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ24525.1|2968053_2969961_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
2969831:2969850	attL	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
QAZ24526.1|2969973_2972082_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAZ24527.1|2972180_2973290_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24528.1|2973286_2973829_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAZ24529.1|2973994_2975005_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAZ24530.1|2975212_2977825_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	4.8e-20
QAZ24531.1|2978251_2978443_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAZ24532.1|2978713_2979400_+	virulence protein	NA	NA	NA	NA	NA
QAZ24533.1|2979384_2979684_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24534.1|2979752_2980379_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAZ24535.1|2981026_2981995_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
QAZ24536.1|2982470_2983052_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAZ24537.1|2983051_2985490_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
QAZ24538.1|2985543_2985786_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24539.1|2985824_2989175_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QAZ24540.1|2989246_2989951_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
QAZ24541.1|2989848_2990586_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAZ24542.1|2990595_2991291_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAZ24543.1|2991380_2991914_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAZ24544.1|2992030_2992528_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAZ24545.1|2992626_2992959_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
QAZ26335.1|2992955_2995943_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
QAZ24546.1|2996022_2996352_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
QAZ24547.1|2996348_2996747_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
QAZ24548.1|2996792_2997542_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
QAZ24549.1|2997553_2997955_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
QAZ24550.1|2997951_2998518_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
QAZ24551.1|2998498_2998798_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
QAZ24552.1|2998790_2999114_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
QAZ26337.1|2999204_3001286_-	peptidase S14	NA	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
QAZ26336.1|3001209_3002727_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
QAZ24553.1|3002753_3002960_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
QAZ24554.1|3002956_3005095_-	DNA packaging protein	NA	A5LH27	Enterobacteria_phage	72.6	3.4e-290
QAZ24555.1|3005051_3005585_-	DNA breaking-rejoining protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
QAZ26339.1|3005792_3006272_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
QAZ24556.1|3006289_3006742_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
QAZ26338.1|3006725_3007055_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ24557.1|3007330_3008017_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAZ24558.1|3008377_3008827_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24559.1|3008962_3009088_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24560.1|3009261_3009579_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24561.1|3009645_3010443_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
QAZ24562.1|3010432_3010579_-	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
QAZ24563.1|3010575_3011187_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
QAZ24564.1|3011189_3011396_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
QAZ24565.1|3011395_3011998_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
QAZ24566.1|3012080_3012302_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24567.1|3012413_3012647_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
QAZ24568.1|3012938_3013229_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24569.1|3013306_3013618_-	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
QAZ24570.1|3013614_3013962_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
QAZ24571.1|3013972_3014722_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAZ24572.1|3014724_3015708_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAZ24573.1|3015792_3016167_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAZ24574.1|3016132_3016372_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
QAZ24575.1|3016491_3016902_+	transcriptional regulator	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
QAZ24576.1|3016951_3017212_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24577.1|3017204_3017363_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
QAZ24578.1|3017384_3017684_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
QAZ24579.1|3017810_3020696_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	97.3	0.0e+00
QAZ24580.1|3020658_3021816_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
QAZ24581.1|3021858_3022098_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ24582.1|3022138_3022387_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAZ24583.1|3022431_3023724_+|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	1.0e-252
QAZ24584.1|3023918_3025121_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAZ24585.1|3025201_3026635_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAZ24586.1|3026880_3028095_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
QAZ24587.1|3028181_3028415_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24588.1|3028411_3028873_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ24589.1|3029073_3030474_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
3041626:3041645	attR	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
>prophage 9
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	3094904	3102218	4859678	integrase,protease	Ralstonia_phage(16.67%)	8	3089779:3089793	3100954:3100968
3089779:3089793	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
QAZ24638.1|3094904_3095282_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	42.7	5.9e-20
QAZ24639.1|3095443_3095641_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ24640.1|3095854_3098131_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAZ24641.1|3098161_3098482_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAZ24642.1|3098805_3099027_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAZ24643.1|3098981_3099176_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ24644.1|3099156_3101103_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
3100954:3100968	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
QAZ24645.1|3101099_3102218_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.8e-08
>prophage 10
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	4453924	4498700	4859678	tail,plate,tRNA	Burkholderia_phage(40.91%)	48	NA	NA
QAZ25848.1|4453924_4454923_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAZ25849.1|4455010_4456321_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAZ25850.1|4456567_4457083_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAZ25851.1|4457182_4457392_-	CsbD family protein	NA	NA	NA	NA	NA
QAZ26399.1|4457413_4457527_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ25852.1|4457523_4458849_-	MATE family efflux transporter	NA	NA	NA	NA	NA
QAZ25853.1|4459027_4459636_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAZ25854.1|4459744_4460113_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAZ25855.1|4460283_4462704_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAZ25856.1|4462802_4463675_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAZ25857.1|4463688_4464186_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAZ25858.1|4464366_4465284_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAZ25859.1|4465447_4466806_-	maltoporin	NA	NA	NA	NA	NA
QAZ25860.1|4466894_4468004_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAZ25861.1|4468365_4469556_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAZ25862.1|4469687_4471232_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAZ25863.1|4471246_4472137_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAZ25864.1|4472302_4472713_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAZ25865.1|4472855_4474952_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAZ25866.1|4474951_4475689_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ25867.1|4475685_4476324_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAZ25868.1|4476387_4476630_-	outer membrane protein	NA	NA	NA	NA	NA
QAZ25869.1|4477073_4478723_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAZ25870.1|4479067_4480417_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAZ25871.1|4480547_4480895_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAZ25872.1|4481472_4481760_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QAZ25873.1|4481762_4482368_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAZ25874.1|4482380_4482695_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAZ25875.1|4482854_4483310_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ25876.1|4483306_4483504_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAZ25877.1|4483493_4484921_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.8e-194
QAZ25878.1|4484920_4485445_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAZ25879.1|4485496_4485814_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAZ25880.1|4485773_4485902_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAZ25881.1|4485998_4488353_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.8	2.8e-67
QAZ25882.1|4488352_4489306_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAZ25883.1|4489305_4489515_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAZ25884.1|4489502_4490546_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	3.2e-76
QAZ25885.1|4490555_4491278_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	2.3e-12
QAZ25886.1|4491286_4491526_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ25887.1|4491601_4491964_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
QAZ25888.1|4491960_4492890_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
QAZ25889.1|4492889_4494437_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	30.4	1.6e-50
QAZ25890.1|4494600_4494960_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAZ25891.1|4494950_4496066_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	5.3e-101
QAZ25892.1|4496058_4496691_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
QAZ25893.1|4496693_4498175_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	1.6e-52
QAZ25894.1|4498184_4498700_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	40.7	1.3e-33
>prophage 11
CP025241	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 chromosome, complete genome	4859678	4647535	4683253	4859678	head,plate,integrase,portal,terminase,tail,capsid,holin	Salmonella_phage(45.24%)	48	4647328:4647374	4678307:4678353
4647328:4647374	attL	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAZ26013.1|4647535_4647952_+	hypothetical protein	NA	S4TTB4	Salmonella_phage	52.3	1.8e-33
QAZ26014.1|4647986_4648205_-	transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
QAZ26015.1|4648282_4649452_-	hypothetical protein	NA	S4TRX8	Salmonella_phage	95.6	1.4e-205
QAZ26016.1|4649448_4649934_-|tail	phage tail protein	tail	S4TUC3	Salmonella_phage	94.4	5.9e-81
QAZ26017.1|4649945_4652387_-|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	93.1	0.0e+00
QAZ26018.1|4652379_4652535_-|tail	GpE family phage tail protein	tail	Q6K1G8	Salmonella_virus	98.0	8.8e-23
QAZ26019.1|4652531_4652867_-|tail	phage tail assembly protein	tail	A0A0M4S5P8	Salmonella_phage	100.0	1.8e-52
QAZ26020.1|4652929_4653448_-|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	99.4	1.4e-93
QAZ26021.1|4653463_4654651_-|tail	phage tail protein	tail	Q6K1H0	Salmonella_virus	100.0	2.0e-223
QAZ26022.1|4654785_4655355_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.8	3.0e-92
QAZ26023.1|4655354_4657097_-	hypothetical protein	NA	A0A0M3ULF6	Salmonella_phage	97.1	1.5e-267
QAZ26024.1|4657107_4657638_-|tail	phage tail protein I	tail	A0A0M4R4W9	Salmonella_phage	100.0	1.9e-104
QAZ26025.1|4657630_4658539_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	98.7	1.7e-158
QAZ26026.1|4658545_4658893_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	98.3	2.1e-56
QAZ26027.1|4658889_4659531_-|plate	phage baseplate assembly protein V	plate	Q6K1H6	Salmonella_virus	85.0	2.4e-98
QAZ26028.1|4659607_4660984_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
QAZ26029.1|4660988_4661456_-	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	67.8	9.8e-49
QAZ26030.1|4661448_4661916_-|tail	phage tail protein	tail	U5N0S7	Enterobacteria_phage	69.0	2.2e-56
QAZ26031.1|4661878_4662124_-|holin	holin	holin	S4TNY4	Salmonella_phage	73.1	5.5e-27
QAZ26032.1|4662023_4662437_-	protein lysB	NA	O80310	Escherichia_phage	59.9	8.4e-36
QAZ26033.1|4662433_4662943_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	82.6	4.6e-76
QAZ26034.1|4662926_4663148_-	primosomal protein	NA	A0A218M4L5	Erwinia_phage	71.2	8.7e-24
QAZ26035.1|4663138_4663342_-|tail	phage tail protein	tail	U5N3E7	Enterobacteria_phage	76.1	8.9e-23
QAZ26036.1|4663341_4663842_-|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	68.5	3.8e-59
QAZ26037.1|4663939_4664698_-|terminase	terminase	terminase	Q94MJ2	Enterobacteria_phage	67.1	2.7e-80
QAZ26038.1|4664701_4665862_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	62.5	2.8e-129
QAZ26039.1|4665893_4666757_-|capsid	capsid scaffolding protein	capsid	A0A218M4L9	Erwinia_phage	64.8	4.5e-100
QAZ26040.1|4666921_4668691_+	oxidoreductase	NA	Q9T0R3	Escherichia_phage	81.0	3.2e-286
QAZ26041.1|4668690_4669728_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	78.7	7.7e-163
QAZ26042.1|4670248_4670440_-	hypothetical protein	NA	S4TRZ0	Salmonella_phage	100.0	1.1e-27
QAZ26043.1|4670438_4670870_+	hypothetical protein	NA	S4TUD6	Salmonella_phage	100.0	1.1e-75
QAZ26044.1|4671003_4672044_+	cell filamentation protein Fic	NA	S4TP71	Salmonella_phage	100.0	6.3e-197
QAZ26045.1|4672040_4672238_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ26405.1|4672416_4674693_-	replication endonuclease	NA	S4TTC1	Salmonella_phage	88.0	0.0e+00
QAZ26046.1|4674682_4674958_-	hypothetical protein	NA	M1TAP2	Escherichia_phage	72.5	7.0e-31
QAZ26047.1|4674954_4675179_-	hypothetical protein	NA	A0A0F7LDG9	Escherichia_phage	75.7	2.0e-23
QAZ26048.1|4675480_4675705_-	DUF2732 domain-containing protein	NA	Q7Y4C2	Escherichia_virus	78.4	3.4e-23
QAZ26049.1|4675768_4676269_-	replication protein B	NA	M1SV55	Escherichia_phage	91.0	1.8e-85
QAZ26050.1|4676438_4676711_-	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	87.8	1.0e-42
QAZ26051.1|4676847_4677141_+	XRE family transcriptional regulator	NA	Q1JS45	Enterobacteria_phage	75.3	1.6e-36
QAZ26052.1|4677210_4678191_+|integrase	integrase	integrase	S4TP66	Salmonella_phage	96.0	1.5e-179
QAZ26053.1|4678375_4678876_-	stress adaptor protein CpxP	NA	NA	NA	NA	NA
4678307:4678353	attR	GATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTGTC	NA	NA	NA	NA
QAZ26054.1|4679026_4679725_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
QAZ26055.1|4679721_4681095_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
QAZ26056.1|4681142_4681346_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ26057.1|4681466_4681862_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
QAZ26058.1|4681873_4682626_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAZ26059.1|4682632_4683253_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
>prophage 1
CP025242	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929 plasmid pSNE1-1929, complete sequence	98400	18849	64419	98400	head,tail,transposase	Escherichia_phage(33.33%)	52	NA	NA
QAZ26446.1|18849_19554_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAZ26447.1|20104_20809_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAZ26448.1|20842_21334_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ26449.1|21440_22178_+	resolvase	NA	NA	NA	NA	NA
QAZ26450.1|22174_22399_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26451.1|22609_24103_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAZ26452.1|24133_25018_+	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
QAZ26453.1|25234_26449_+	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	3.2e-19
QAZ26454.1|26476_26782_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ26455.1|27048_28248_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
QAZ26456.1|28326_29004_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ26457.1|29035_29278_-	relaxase	NA	NA	NA	NA	NA
QAZ26458.1|29583_30420_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
QAZ26459.1|30419_31223_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
QAZ26460.1|31283_32099_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
QAZ26461.1|32405_32717_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26462.1|32890_33676_+	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	26.4	6.1e-11
QAZ26463.1|33679_34861_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	28.7	2.4e-11
QAZ26464.1|34909_35182_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26465.1|35234_35870_-	restriction endonuclease subunit M	NA	NA	NA	NA	NA
QAZ26466.1|36431_36809_+	hypothetical protein	NA	A0A2H4P7P5	Pseudomonas_phage	49.6	1.7e-22
QAZ26467.1|36801_37083_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26468.1|37057_37732_+	thymidylate kinase	NA	NA	NA	NA	NA
QAZ26535.1|37799_38231_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26469.1|38215_38548_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26470.1|38556_39057_+	hypothetical protein	NA	I3UMJ0	Colwellia_phage	38.4	9.5e-18
QAZ26471.1|39060_40488_+	DNA cytosine methyltransferase	NA	NA	NA	NA	NA
QAZ26472.1|40487_41144_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26473.1|41199_41817_+|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
QAZ26474.1|41817_42024_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26475.1|42028_42328_+	RNA-binding protein	NA	A0A0K1LLW2	Caulobacter_phage	55.4	3.6e-20
QAZ26476.1|42418_42907_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ26477.1|42921_45114_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	29.4	9.9e-43
QAZ26478.1|45113_45347_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ26479.1|45328_45946_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ26480.1|46113_49086_+	conjugal transfer protein TraI	NA	NA	NA	NA	NA
QAZ26481.1|49082_50948_+	conjugal transfer protein	NA	NA	NA	NA	NA
QAZ26482.1|50958_51543_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26483.1|51499_52129_+	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
QAZ26484.1|52138_52585_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26485.1|52594_52972_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26486.1|52971_53634_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26487.1|53957_54335_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ26488.1|54479_54761_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
QAZ26489.1|54757_55384_+	pilus assembly protein	NA	NA	NA	NA	NA
QAZ26490.1|55367_56285_+	conjugal transfer protein TraK	NA	NA	NA	NA	NA
QAZ26491.1|56281_57598_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
QAZ26492.1|57594_58173_+	type IV conjugative transfer system protein TraV	NA	NA	NA	NA	NA
QAZ26493.1|58176_58569_+	conjugal transfer protein TraA	NA	NA	NA	NA	NA
QAZ26494.1|60510_61218_-	disulfide isomerase	NA	NA	NA	NA	NA
QAZ26495.1|62947_63652_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAZ26496.1|63714_64419_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
