The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	1227913	1304665	4830765	portal,protease,tail,head,integrase,capsid,terminase,holin,lysis,tRNA,transposase	Salmonella_phage(37.93%)	94	1219994:1220010	1310512:1310528
1219994:1220010	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QAZ17806.1|1227913_1228951_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAZ17807.1|1229066_1229756_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAZ17808.1|1230074_1230458_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAZ17809.1|1230519_1231107_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAZ21230.1|1231209_1232109_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ17810.1|1232126_1233461_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAZ17811.1|1233590_1234328_+|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	tRNA	NA	NA	NA	NA
QAZ17812.1|1234312_1235935_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAZ17813.1|1236019_1236199_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ17814.1|1236359_1236935_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAZ17815.1|1236966_1237617_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAZ17816.1|1237616_1238573_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAZ17817.1|1238569_1239049_+	SoxR reducing system protein RseC	NA	NA	NA	NA	NA
QAZ17818.1|1239078_1239195_+	transcriptional regulator	NA	NA	NA	NA	NA
QAZ17819.1|1239546_1240776_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.1	4.9e-233
QAZ17820.1|1240753_1241038_-	excisionase	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAZ17821.1|1241078_1241318_-	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ17822.1|1241360_1242518_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAZ17823.1|1242480_1245408_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
QAZ17824.1|1245534_1245885_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAZ17825.1|1245906_1246065_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAZ17826.1|1246521_1247184_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ17827.1|1247183_1247570_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ17828.1|1247562_1248402_-	chromosome partitioning protein ParA	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
QAZ17829.1|1248460_1248856_-	transcriptional regulator	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
QAZ17830.1|1248955_1249198_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
QAZ17831.1|1249157_1249532_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
QAZ17832.1|1249623_1250508_+	replication protein	NA	K7PGT1	Enterobacteria_phage	47.2	1.3e-46
QAZ17833.1|1250504_1251200_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
QAZ17834.1|1251213_1251912_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
QAZ17835.1|1252019_1252652_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ17836.1|1252894_1253128_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
QAZ17837.1|1253244_1253493_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
QAZ17838.1|1253527_1254130_+	hypothetical protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
QAZ17839.1|1254129_1254336_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAZ17840.1|1254338_1254950_+	protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.5	1.8e-90
QAZ17841.1|1254946_1255087_+	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAZ17842.1|1255083_1255761_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAZ17843.1|1255757_1255943_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ17844.1|1256033_1256597_+	hypothetical protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAZ17845.1|1257103_1257292_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ17846.1|1257506_1258193_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAZ21231.1|1258468_1258798_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ17847.1|1258781_1259234_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
QAZ21232.1|1259251_1259704_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAZ17848.1|1259939_1260341_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAZ17849.1|1260375_1260570_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ17850.1|1260627_1261173_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAZ17851.1|1261144_1263076_+|terminase	terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAZ17852.1|1263059_1263263_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAZ17853.1|1263259_1264840_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAZ17854.1|1264829_1266326_+	scaffolding protein	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAZ17855.1|1266338_1266686_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAZ17856.1|1266740_1267769_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAZ17857.1|1267826_1268186_+	DNA packaging protein	NA	NA	NA	NA	NA
QAZ17858.1|1268196_1268580_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAZ17859.1|1268607_1269186_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAZ17860.1|1269234_1270485_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	7.8e-218
QAZ17861.1|1270473_1270875_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAZ17862.1|1270882_1271629_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
QAZ17863.1|1271679_1272075_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAZ17864.1|1272071_1272410_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAZ17865.1|1272381_1275477_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	6.1e-280
QAZ17866.1|1275479_1275809_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAZ17867.1|1275818_1276517_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAZ17868.1|1276523_1277261_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAZ17869.1|1277158_1277806_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAZ17870.1|1277867_1281230_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAZ17871.1|1281268_1281511_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ17872.1|1281564_1283937_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAZ17873.1|1283933_1284758_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAZ17874.1|1284747_1285326_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAZ17875.1|1285422_1285650_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ17876.1|1285756_1285969_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAZ21233.1|1286031_1286097_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ17877.1|1286761_1287307_-|transposase	transposase	transposase	NA	NA	NA	NA
QAZ17878.1|1287553_1287691_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ17879.1|1288187_1289681_-	type III secretion system protein	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAZ17880.1|1290085_1291885_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAZ17881.1|1291901_1292876_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QAZ17882.1|1293149_1293830_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAZ17883.1|1293826_1294732_+	GTPase Era	NA	NA	NA	NA	NA
QAZ17884.1|1294743_1295472_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAZ17885.1|1295483_1296215_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAZ17886.1|1296214_1296595_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAZ17887.1|1296706_1296967_-	ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.5	4.9e-18
QAZ17888.1|1297004_1297931_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	1.8e-09
QAZ17889.1|1298046_1299243_+	MFS transporter	NA	NA	NA	NA	NA
QAZ17890.1|1299264_1300182_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
QAZ17891.1|1300220_1301069_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ17892.1|1301184_1302078_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QAZ17893.1|1302088_1303450_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAZ17894.1|1303453_1304089_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAZ17895.1|1304113_1304665_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1310512:1310528	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 2
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	1748573	1757744	4830765	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAZ18294.1|1748573_1749521_+	ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
QAZ18295.1|1749504_1750236_+	ABC transporter permease	NA	NA	NA	NA	NA
QAZ18296.1|1750216_1750324_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ18297.1|1750383_1751115_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAZ18298.1|1751337_1753023_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
QAZ18299.1|1753019_1753739_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAZ18300.1|1753785_1754253_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAZ18301.1|1754309_1754840_-	lipoprotein	NA	NA	NA	NA	NA
QAZ18302.1|1755011_1755470_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAZ18303.1|1755710_1757744_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	1825835	1836342	4830765		Enterobacteria_phage(37.5%)	10	NA	NA
QAZ18358.1|1825835_1827239_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
QAZ18359.1|1827416_1828310_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAZ18360.1|1828686_1829772_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAZ18361.1|1829771_1830671_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
QAZ18362.1|1830718_1831597_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
QAZ18363.1|1831597_1832149_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
QAZ18364.1|1832154_1833129_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAZ18365.1|1833144_1833918_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAZ18366.1|1833922_1835002_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
QAZ18367.1|1835028_1836342_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 4
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	1929474	1940124	4830765		Morganella_phage(25.0%)	13	NA	NA
QAZ18456.1|1929474_1929999_-	peptidase	NA	G9L6C4	Escherichia_phage	77.7	1.3e-36
QAZ18457.1|1930645_1930936_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	50.9	1.0e-08
QAZ18458.1|1931307_1932105_-	protein MtfA	NA	NA	NA	NA	NA
QAZ18459.1|1932585_1932747_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ18460.1|1932873_1933293_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAZ18461.1|1933295_1934564_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.2	1.4e-227
QAZ18462.1|1935018_1935231_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAZ21255.1|1935241_1935430_+	cold-shock protein	NA	NA	NA	NA	NA
QAZ18463.1|1935687_1936884_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	5.1e-110
QAZ18464.1|1936895_1937096_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ18465.1|1937533_1937845_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ18466.1|1937924_1938620_+	phosphohydrolase	NA	S4W232	Pandoravirus	28.0	2.8e-07
QAZ18467.1|1938693_1940124_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 5
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	2045162	2080279	4830765	integrase,protease,tail	Salmonella_phage(25.0%)	37	2046920:2046935	2061953:2061968
QAZ18581.1|2045162_2046242_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	8.7e-101
2046920:2046935	attL	CACTTCTTCTTTTTCA	NA	NA	NA	NA
QAZ18582.1|2047375_2047663_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	92.7	8.1e-38
QAZ18583.1|2048450_2048618_-	lytic enzyme	NA	NA	NA	NA	NA
QAZ18584.1|2048682_2048871_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ18585.1|2049343_2050225_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	74.9	1.4e-64
QAZ18586.1|2050321_2050522_-	phage virulence factor	NA	NA	NA	NA	NA
QAZ18587.1|2050723_2050828_-|tail	phage tail protein	tail	NA	NA	NA	NA
QAZ18588.1|2051090_2051216_+	arsenic transporter	NA	NA	NA	NA	NA
QAZ18589.1|2051344_2051611_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ18590.1|2052363_2052978_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
QAZ18591.1|2052987_2053146_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ18592.1|2053278_2054193_-	protein PagO	NA	NA	NA	NA	NA
QAZ21260.1|2054810_2055011_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ18593.1|2055301_2055550_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ18594.1|2055487_2055856_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
QAZ18595.1|2057319_2057460_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ18596.1|2057624_2057894_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
QAZ18597.1|2057940_2058135_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ18598.1|2058263_2058683_+	N-acetyltransferase	NA	NA	NA	NA	NA
QAZ18599.1|2061755_2062769_-	acyltransferase	NA	NA	NA	NA	NA
2061953:2061968	attR	TGAAAAAGAAGAAGTG	NA	NA	NA	NA
QAZ18600.1|2063465_2063669_-	fimbrial protein	NA	NA	NA	NA	NA
QAZ18601.1|2063852_2064137_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ18602.1|2065296_2065506_+	chemotaxis protein	NA	NA	NA	NA	NA
QAZ18603.1|2065733_2066210_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ18604.1|2066525_2066921_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
QAZ18605.1|2067604_2068327_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
QAZ18606.1|2068611_2068776_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ18607.1|2068999_2069650_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	2.7e-57
QAZ18608.1|2069668_2069860_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
QAZ18609.1|2069970_2070210_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
QAZ21261.1|2070324_2071764_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA	NA
QAZ18610.1|2071841_2074481_-	MCE family protein	NA	NA	NA	NA	NA
QAZ18611.1|2074443_2075727_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ18612.1|2075768_2076353_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
QAZ18613.1|2076450_2077137_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
QAZ18614.1|2077156_2079205_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
QAZ18615.1|2079397_2080279_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 6
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	2838507	2966743	4830765	portal,head,protease,tail,integrase,holin,lysis,tRNA	Salmonella_phage(51.89%)	158	2906100:2906119	2977895:2977914
QAZ21292.1|2838507_2838828_-	hypothetical protein	NA	E5G6P3	Salmonella_phage	76.6	1.2e-08
QAZ19370.1|2839045_2839921_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA	NA
QAZ19371.1|2840142_2840823_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	9.8e-82
QAZ19372.1|2841211_2841478_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	78.4	7.3e-33
QAZ19373.1|2841534_2842182_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ21293.1|2842224_2842422_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	97.0	1.4e-09
QAZ19374.1|2843047_2843440_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	8.5e-14
QAZ19375.1|2843549_2844158_-	DUF4376 domain-containing protein	NA	S5MBX6	Escherichia_phage	44.7	1.1e-31
QAZ19376.1|2844220_2844406_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19377.1|2844654_2845173_-|tail	phage tail protein	tail	A0A0U2QV64	Escherichia_phage	53.8	2.0e-47
QAZ19378.1|2845187_2846720_-|tail	phage tail protein	tail	S4TP62	Salmonella_phage	66.2	1.4e-128
QAZ19379.1|2846719_2847400_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.0	5.5e-125
QAZ19380.1|2847396_2848596_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	96.7	5.5e-213
QAZ19381.1|2848596_2848950_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	95.7	3.0e-58
QAZ19382.1|2848949_2849702_-	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	69.8	9.7e-91
QAZ19383.1|2849820_2850276_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19384.1|2850359_2850692_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.1	1.7e-23
QAZ19385.1|2850688_2851756_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	91.5	2.0e-174
QAZ19386.1|2851758_2852061_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	100.0	4.2e-53
QAZ19387.1|2852060_2852636_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	100.0	2.4e-97
QAZ19388.1|2852635_2854645_-	lytic transglycosylase	NA	A0A0M4REK7	Salmonella_phage	95.2	0.0e+00
QAZ21294.1|2854634_2854811_-	NTP pyrophosphohydrolase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	72.9	4.7e-12
QAZ19389.1|2854822_2855275_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	78.7	1.3e-61
QAZ19390.1|2855278_2855722_-	DUF3277 domain-containing protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	1.0e-55
QAZ19391.1|2855734_2856880_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	75.3	1.2e-164
QAZ19392.1|2856883_2857447_-	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	78.7	2.1e-82
QAZ19393.1|2857421_2857811_-|head,tail	head-tail adaptor	head,tail	A0A0M3ULK0	Salmonella_phage	98.4	2.1e-68
QAZ19394.1|2857797_2858352_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.4e-94
QAZ19395.1|2858348_2858756_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	96.3	3.0e-70
QAZ19396.1|2858721_2859111_-	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	62.0	4.0e-32
QAZ19397.1|2859152_2860094_-	hypothetical protein	NA	A0A0M3ULD3	Salmonella_phage	99.7	3.1e-179
QAZ19398.1|2860105_2860603_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	8.7e-88
QAZ19399.1|2860607_2861840_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	99.3	3.7e-228
QAZ21295.1|2861843_2862383_-|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	91.0	4.5e-82
QAZ19400.1|2862474_2863944_-	hypothetical protein	NA	A0A0M4S6U1	Salmonella_phage	99.2	1.3e-280
QAZ19401.1|2863943_2865566_-	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	99.4	0.0e+00
QAZ19402.1|2865568_2866198_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.1	1.5e-108
QAZ21296.1|2866698_2867154_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	76.8	1.3e-53
QAZ19403.1|2867471_2868011_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	74.1	4.0e-78
QAZ21297.1|2867988_2868291_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAZ19404.1|2868493_2868682_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19405.1|2869074_2869653_-	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
QAZ19406.1|2869649_2869943_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
QAZ19407.1|2869939_2870536_-	DUF1367 domain-containing protein	NA	H9C173	Pectobacterium_phage	73.7	1.5e-81
QAZ19408.1|2870604_2870796_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19409.1|2870979_2871318_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
QAZ19410.1|2871317_2871488_-	methyltransferase	NA	I6S1S6	Salmonella_phage	87.5	6.3e-06
QAZ19411.1|2871484_2872087_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.7e-98
QAZ19412.1|2872079_2872328_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19413.1|2872331_2873012_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19414.1|2873049_2874438_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	47.1	1.2e-105
QAZ19415.1|2874434_2875415_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	80.6	2.3e-44
QAZ19416.1|2875417_2875642_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
QAZ19417.1|2875664_2876111_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	5.5e-25
QAZ21298.1|2876045_2876261_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19418.1|2876175_2876409_-	XRE family transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	48.6	6.2e-12
QAZ19419.1|2876507_2876972_+	transcriptional regulator	NA	A0A0U2QW76	Escherichia_phage	51.7	2.7e-35
QAZ19420.1|2877656_2877980_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19421.1|2877987_2878233_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
QAZ19422.1|2878262_2880527_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	34.7	1.5e-102
QAZ19423.1|2880523_2881078_+	hypothetical protein	NA	H9C156	Pectobacterium_phage	59.3	1.3e-47
QAZ19424.1|2881080_2881263_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19425.1|2881312_2881510_+	hypothetical protein	NA	H9C154	Pectobacterium_phage	58.5	8.3e-10
QAZ19426.1|2881475_2881700_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
QAZ19427.1|2881700_2882720_+|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	53.5	1.2e-91
QAZ19428.1|2883307_2883967_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
QAZ19429.1|2884053_2884383_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAZ19430.1|2884379_2884661_-	acylphosphatase	NA	NA	NA	NA	NA
QAZ19431.1|2884709_2885489_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ19432.1|2885514_2886063_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAZ19433.1|2886277_2887489_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAZ19434.1|2887546_2887864_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAZ19435.1|2887908_2888325_-	CoA-binding protein	NA	NA	NA	NA	NA
QAZ19436.1|2888495_2889158_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19437.1|2889252_2889711_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAZ19438.1|2889746_2891801_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	1.1e-19
QAZ19439.1|2891924_2892371_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAZ19440.1|2892389_2894543_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAZ19441.1|2894529_2895135_-	DNA transformation protein	NA	NA	NA	NA	NA
QAZ19442.1|2895351_2895861_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAZ19443.1|2896217_2897270_+	porin OmpA	NA	NA	NA	NA	NA
QAZ19444.1|2897341_2897794_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAZ19445.1|2897979_2899740_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAZ19446.1|2899808_2900327_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAZ19447.1|2900426_2900594_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAZ19448.1|2900849_2901413_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19449.1|2901409_2903050_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
QAZ19450.1|2903054_2904308_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
QAZ19451.1|2904322_2906230_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
2906100:2906119	attL	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
QAZ19452.1|2906242_2908351_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAZ19453.1|2908449_2909559_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19454.1|2909555_2910098_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAZ19455.1|2910263_2911274_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAZ19456.1|2911481_2914094_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	4.8e-20
QAZ19457.1|2914520_2914712_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAZ19458.1|2914982_2915669_+	virulence protein	NA	NA	NA	NA	NA
QAZ19459.1|2915653_2915953_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19460.1|2916021_2916648_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAZ19461.1|2917295_2918264_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	100.0	7.1e-195
QAZ19462.1|2918739_2919321_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAZ19463.1|2919320_2921759_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
QAZ19464.1|2921812_2922055_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19465.1|2922093_2925444_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QAZ19466.1|2925515_2926220_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
QAZ19467.1|2926117_2926855_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAZ19468.1|2926864_2927560_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAZ19469.1|2927649_2928183_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAZ19470.1|2928299_2928797_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAZ19471.1|2928895_2929228_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
QAZ21299.1|2929224_2932212_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
QAZ19472.1|2932291_2932621_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
QAZ19473.1|2932617_2933016_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
QAZ19474.1|2933061_2933811_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
QAZ19475.1|2933822_2934224_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
QAZ19476.1|2934220_2934787_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
QAZ19477.1|2934767_2935067_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
QAZ19478.1|2935059_2935383_-	recombinase RecA	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
QAZ21301.1|2935473_2937555_-	peptidase S14	NA	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
QAZ21300.1|2937478_2938996_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
QAZ19479.1|2939022_2939229_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
QAZ19480.1|2939225_2941364_-	DNA packaging protein	NA	A5LH27	Enterobacteria_phage	72.6	3.4e-290
QAZ19481.1|2941320_2941854_-	DNA breaking-rejoining protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
QAZ21303.1|2942061_2942541_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
QAZ19482.1|2942558_2943011_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
QAZ21302.1|2942994_2943324_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAZ19483.1|2943599_2944286_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAZ19484.1|2944646_2945096_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19485.1|2945231_2945357_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19486.1|2945530_2945848_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19487.1|2945914_2946712_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
QAZ19488.1|2946701_2946848_-	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
QAZ19489.1|2946844_2947456_-	protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
QAZ19490.1|2947458_2947665_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
QAZ19491.1|2947664_2948267_-	hypothetical protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
QAZ19492.1|2948349_2948571_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19493.1|2948682_2948916_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
QAZ19494.1|2949207_2949498_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19495.1|2949575_2949887_-	hypothetical protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
QAZ19496.1|2949883_2950231_-	DNA-binding protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
QAZ19497.1|2950241_2950991_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAZ19498.1|2950993_2951977_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAZ19499.1|2952061_2952436_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAZ19500.1|2952401_2952641_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
QAZ19501.1|2952760_2953171_+	transcriptional regulator	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
QAZ19502.1|2953220_2953481_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19503.1|2953473_2953632_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
QAZ19504.1|2953653_2953953_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	84.5	8.1e-49
QAZ19505.1|2954079_2956965_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	97.2	0.0e+00
QAZ19506.1|2956927_2958085_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
QAZ19507.1|2958127_2958367_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAZ19508.1|2958407_2958656_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAZ19509.1|2958700_2959993_+|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	1.0e-252
QAZ19510.1|2960187_2961390_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAZ19511.1|2961470_2962904_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAZ19512.1|2963149_2964364_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
QAZ19513.1|2964450_2964684_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19514.1|2964680_2965142_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ19515.1|2965342_2966743_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
2977895:2977914	attR	GTGGATTTCCCGGCGCCGTT	NA	NA	NA	NA
>prophage 7
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	3031173	3038487	4830765	integrase,protease	Ralstonia_phage(16.67%)	8	3026048:3026062	3037223:3037237
3026048:3026062	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
QAZ19563.1|3031173_3031551_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	42.7	5.9e-20
QAZ19564.1|3031712_3031910_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ19565.1|3032123_3034400_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAZ19566.1|3034430_3034751_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAZ19567.1|3035074_3035296_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAZ19568.1|3035250_3035445_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ19569.1|3035425_3037372_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
3037223:3037237	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
QAZ19570.1|3037368_3038487_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.8e-08
>prophage 8
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	4390195	4434971	4830765	plate,tail,tRNA	Burkholderia_phage(40.91%)	48	NA	NA
QAZ20776.1|4390195_4391194_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAZ20777.1|4391281_4392592_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAZ20778.1|4392838_4393354_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAZ21362.1|4393453_4393663_-	CsbD family protein	NA	NA	NA	NA	NA
QAZ21363.1|4393684_4393798_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ20779.1|4393794_4395120_-	MATE family efflux transporter	NA	NA	NA	NA	NA
QAZ20780.1|4395298_4395907_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAZ20781.1|4396015_4396384_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAZ20782.1|4396554_4398975_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAZ20783.1|4399073_4399946_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAZ20784.1|4399959_4400457_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAZ20785.1|4400637_4401555_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAZ20786.1|4401718_4403077_-	maltoporin	NA	NA	NA	NA	NA
QAZ20787.1|4403165_4404275_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAZ20788.1|4404636_4405827_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAZ20789.1|4405958_4407503_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAZ20790.1|4407517_4408408_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAZ20791.1|4408573_4408984_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAZ20792.1|4409126_4411223_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAZ20793.1|4411222_4411960_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ20794.1|4411956_4412595_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAZ20795.1|4412658_4412901_-	outer membrane protein	NA	NA	NA	NA	NA
QAZ20796.1|4413344_4414994_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAZ20797.1|4415338_4416688_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAZ20798.1|4416818_4417166_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAZ20799.1|4417743_4418031_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QAZ20800.1|4418033_4418639_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAZ20801.1|4418651_4418966_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAZ20802.1|4419125_4419581_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ20803.1|4419577_4419775_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAZ20804.1|4419764_4421192_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.8e-194
QAZ20805.1|4421191_4421716_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAZ20806.1|4421767_4422085_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAZ20807.1|4422044_4422173_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAZ20808.1|4422269_4424624_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.8	2.8e-67
QAZ20809.1|4424623_4425577_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAZ20810.1|4425576_4425786_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAZ20811.1|4425773_4426817_+	phage protein D	NA	Q6QIA2	Burkholderia_phage	45.1	3.2e-76
QAZ20812.1|4426826_4427549_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	2.3e-12
QAZ20813.1|4427557_4427797_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ20814.1|4427872_4428235_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
QAZ20815.1|4428231_4429161_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
QAZ20816.1|4429160_4430708_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	30.4	1.6e-50
QAZ20817.1|4430871_4431231_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAZ20818.1|4431221_4432337_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	5.3e-101
QAZ20819.1|4432329_4432962_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
QAZ20820.1|4432964_4434446_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.7	1.6e-52
QAZ20821.1|4434455_4434971_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	40.7	1.3e-33
>prophage 9
CP025237	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1928 chromosome, complete genome	4830765	4583803	4652182	4830765	portal,head,plate,tail,integrase,capsid,terminase,holin,lysis	Salmonella_phage(38.46%)	89	4614573:4614619	4649392:4649438
QAZ20940.1|4583803_4584220_+	hypothetical protein	NA	S4TTB4	Salmonella_phage	52.3	1.8e-33
QAZ20941.1|4584254_4584473_-	transcriptional regulator	NA	S4TNZ3	Salmonella_phage	100.0	4.7e-38
QAZ20942.1|4584550_4585720_-	hypothetical protein	NA	S4TRX8	Salmonella_phage	95.6	1.4e-205
QAZ20943.1|4585716_4586202_-|tail	phage tail protein	tail	S4TUC3	Salmonella_phage	94.4	5.9e-81
QAZ20944.1|4586213_4588655_-|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	93.1	0.0e+00
QAZ20945.1|4588647_4588803_-|tail	GpE family phage tail protein	tail	Q6K1G8	Salmonella_virus	98.0	8.8e-23
QAZ20946.1|4588799_4589135_-|tail	phage tail assembly protein	tail	A0A0M4S5P8	Salmonella_phage	100.0	1.8e-52
QAZ20947.1|4589197_4589716_-|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	99.4	1.4e-93
QAZ20948.1|4589731_4590919_-|tail	phage tail protein	tail	Q6K1H0	Salmonella_virus	100.0	2.0e-223
QAZ20949.1|4591053_4591623_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.8	3.0e-92
QAZ20950.1|4591622_4593365_-	hypothetical protein	NA	A0A0M3ULF6	Salmonella_phage	97.1	1.5e-267
QAZ20951.1|4593375_4593906_-|tail	phage tail protein I	tail	A0A0M4R4W9	Salmonella_phage	100.0	1.9e-104
QAZ20952.1|4593898_4594807_-|plate	baseplate assembly protein	plate	A0A1J0I2M3	Salmonella_phage	98.7	1.7e-158
QAZ20953.1|4594813_4595161_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	98.3	2.1e-56
QAZ20954.1|4595157_4595799_-|plate	phage baseplate assembly protein V	plate	Q6K1H6	Salmonella_virus	85.0	2.4e-98
QAZ20955.1|4595875_4597252_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
QAZ20956.1|4597256_4597724_-	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	67.8	9.8e-49
QAZ20957.1|4597716_4598184_-|tail	phage tail protein	tail	U5N0S7	Enterobacteria_phage	69.0	2.2e-56
QAZ20958.1|4598146_4598392_-|holin	holin	holin	S4TNY4	Salmonella_phage	73.1	5.5e-27
QAZ20959.1|4598291_4598705_-	protein lysB	NA	O80310	Escherichia_phage	59.9	8.4e-36
QAZ20960.1|4598701_4599211_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	82.6	4.6e-76
QAZ20961.1|4599194_4599416_-	primosomal protein	NA	A0A218M4L5	Erwinia_phage	71.2	8.7e-24
QAZ20962.1|4599406_4599610_-|tail	phage tail protein	tail	U5N3E7	Enterobacteria_phage	76.1	8.9e-23
QAZ20963.1|4599609_4600110_-|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	68.5	3.8e-59
QAZ20964.1|4600207_4600966_-|terminase	terminase	terminase	Q94MJ2	Enterobacteria_phage	67.1	2.7e-80
QAZ20965.1|4600969_4602130_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	62.5	2.8e-129
QAZ20966.1|4602161_4603025_-|capsid	capsid scaffolding protein	capsid	A0A218M4L9	Erwinia_phage	64.8	4.5e-100
QAZ20967.1|4603189_4604959_+	oxidoreductase	NA	Q9T0R3	Escherichia_phage	81.0	3.2e-286
QAZ20968.1|4604958_4605996_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	78.7	7.7e-163
QAZ20969.1|4606516_4606708_-	hypothetical protein	NA	S4TRZ0	Salmonella_phage	100.0	1.1e-27
QAZ20970.1|4606706_4607138_+	hypothetical protein	NA	S4TUD6	Salmonella_phage	100.0	1.1e-75
QAZ20971.1|4607271_4608312_+	cell filamentation protein Fic	NA	S4TP71	Salmonella_phage	100.0	6.3e-197
QAZ20972.1|4608308_4608506_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ21369.1|4608684_4610961_-	replication endonuclease	NA	S4TTC1	Salmonella_phage	88.0	0.0e+00
QAZ20973.1|4610950_4611226_-	hypothetical protein	NA	M1TAP2	Escherichia_phage	72.5	7.0e-31
QAZ20974.1|4611222_4611447_-	hypothetical protein	NA	A0A0F7LDG9	Escherichia_phage	75.7	2.0e-23
QAZ20975.1|4611748_4611973_-	DUF2732 domain-containing protein	NA	Q7Y4C2	Escherichia_virus	78.4	3.4e-23
QAZ20976.1|4612036_4612537_-	replication protein B	NA	M1SV55	Escherichia_phage	91.0	1.8e-85
QAZ20977.1|4612706_4612979_-	hypothetical protein	NA	Q1JS36	Enterobacteria_phage	87.8	1.0e-42
QAZ20978.1|4613115_4613409_+	XRE family transcriptional regulator	NA	Q1JS45	Enterobacteria_phage	75.3	1.6e-36
QAZ20979.1|4613478_4614459_+|integrase	integrase	integrase	S4TP66	Salmonella_phage	96.0	1.5e-179
4614573:4614619	attL	TTGATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTG	NA	NA	NA	NA
QAZ20980.1|4614731_4614989_-	transcriptional regulator	NA	NA	NA	NA	NA
QAZ20981.1|4615034_4616165_-	hypothetical protein	NA	A0A0A7NQ97	Enterobacteria_phage	79.8	2.3e-160
QAZ20982.1|4616323_4617511_+|tail	phage tail sheath family protein	tail	A0A0A7NV69	Enterobacteria_phage	81.7	1.1e-184
QAZ20983.1|4617511_4618024_+|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	68.0	7.6e-63
QAZ21370.1|4618099_4618423_+|tail	phage tail protein	tail	A0A0A7NPZ0	Enterobacteria_phage	55.1	1.2e-16
QAZ20984.1|4618422_4618587_+|tail	GpE family phage tail protein	tail	A0A0A7NQ96	Enterobacteria_phage	79.6	1.4e-15
QAZ20985.1|4618573_4621534_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	51.2	2.1e-253
QAZ20986.1|4621547_4622036_+	oxidoreductase	NA	A0A0A7NV65	Enterobacteria_phage	79.5	1.5e-71
QAZ20987.1|4622055_4622430_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	6.2e-14
QAZ20988.1|4622539_4623211_-|tail	phage tail protein	tail	S5MBX6	Escherichia_phage	63.8	2.2e-78
QAZ20989.1|4623222_4625214_-|tail	phage tail protein	tail	Q6K1H2	Salmonella_virus	48.7	1.3e-169
QAZ20990.1|4625219_4625747_-|tail	phage tail protein I	tail	A0A0A7NPV1	Enterobacteria_phage	61.2	1.1e-56
QAZ20991.1|4625739_4626636_-|plate	baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	69.1	8.9e-107
QAZ20992.1|4626622_4626991_-|plate	baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	71.3	2.9e-40
QAZ20993.1|4626987_4627578_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	69.9	1.7e-69
QAZ21371.1|4627574_4628201_-	phage virion morphogenesis protein	NA	A0A0A7NV60	Enterobacteria_phage	59.9	8.4e-64
QAZ20994.1|4628206_4628683_-|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	49.7	9.3e-39
QAZ20995.1|4628669_4629161_-|lysis	lysis protein	lysis	S4TNN7	Salmonella_phage	56.2	1.3e-32
QAZ20996.1|4629167_4629611_-	lysozyme	NA	A0A075B8L0	Enterobacteria_phage	63.9	1.1e-44
QAZ21372.1|4629607_4629946_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
QAZ20997.1|4629975_4630176_-|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	80.0	1.3e-21
QAZ20998.1|4630175_4630670_-|capsid	capsid assembly protein	capsid	A0A0A7NPU2	Enterobacteria_phage	60.1	2.9e-51
QAZ20999.1|4630771_4631602_-|terminase	terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	65.5	1.4e-90
QAZ21000.1|4631648_4632734_-|capsid	phage major capsid protein, P2 family	capsid	A0A0A7NQ82	Enterobacteria_phage	68.4	9.9e-137
QAZ21001.1|4632757_4633594_-|capsid	phage capsid protein	capsid	A0A0A7NRY7	Enterobacteria_phage	65.5	5.7e-100
QAZ21002.1|4633750_4635484_+	oxidoreductase	NA	A0A0A7NV54	Enterobacteria_phage	75.0	3.8e-263
QAZ21003.1|4635483_4636533_+|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	73.6	3.9e-154
QAZ21004.1|4636811_4637039_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ21005.1|4637001_4639206_-	peptidase S8	NA	NA	NA	NA	NA
QAZ21006.1|4639202_4640285_-	AAA family ATPase	NA	R4TQL5	Phaeocystis_globosa_virus	29.1	3.2e-18
QAZ21007.1|4640422_4642795_-	replication endonuclease	NA	A0A0M4RTM8	Salmonella_phage	80.8	0.0e+00
QAZ21008.1|4642791_4643826_-	DNA cytosine methyltransferase	NA	A0A0M3ULA1	Salmonella_phage	61.9	5.6e-129
QAZ21009.1|4643826_4644024_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ21010.1|4644023_4644905_-	adenine methylase	NA	A0A0M4QWR0	Salmonella_phage	82.3	6.6e-131
QAZ21011.1|4644906_4645119_-	hypothetical protein	NA	A0A0M4R514	Salmonella_phage	95.7	6.4e-32
QAZ21012.1|4645161_4645344_-	DUF3927 domain-containing protein	NA	NA	NA	NA	NA
QAZ21013.1|4645343_4645778_-	tellurite resistance protein	NA	Q1MVI3	Enterobacteria_phage	91.0	5.1e-68
QAZ21014.1|4645872_4646103_-	hypothetical protein	NA	A0A0M4S6M9	Salmonella_phage	76.0	1.2e-28
QAZ21015.1|4646092_4646299_-	DUF4761 domain-containing protein	NA	A0A0M5M1I3	Salmonella_phage	100.0	4.3e-33
QAZ21016.1|4646309_4646513_-	hypothetical protein	NA	A0A0M3ULI0	Salmonella_phage	98.5	1.2e-30
QAZ21373.1|4646523_4646805_-	regulator	NA	A0A0M4RCW1	Salmonella_phage	100.0	1.4e-50
QAZ21017.1|4646943_4647399_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ21018.1|4647349_4647811_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ21019.1|4647882_4648236_+	XRE family transcriptional regulator	NA	A0A0M5M1I9	Salmonella_phage	100.0	1.2e-59
QAZ21020.1|4648305_4649286_+|integrase	integrase	integrase	A0A0M4RTQ0	Salmonella_phage	100.0	3.8e-188
QAZ21021.1|4649462_4649963_-	stress adaptor protein CpxP	NA	NA	NA	NA	NA
4649392:4649438	attR	TTGATAAAAAAAACCCCCACATCATGTGGGGGAAGACAGGGATGGTG	NA	NA	NA	NA
QAZ21022.1|4650113_4650812_+	DNA-binding response regulator	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
QAZ21023.1|4650808_4652182_+	two-component system sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
