assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004136075.1_ASM413607v1	CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	1	974710-975957	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,WYL,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGN,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,30,29	0	0	NA	NA	I-E:I-E:I-E	20,20,17	20	Orphan	cas3,WYL,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	NA,NA|57aa|down_2|CP025232.1_977230_977401_+,NA|81aa|down_6|CP025232.1_981935_982178_-	NA|179aa|up_9|CP025232.1_963254_963791_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|CP025232.1_963787_964258_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|CP025232.1_964272_964779_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|CP025232.1_964798_965572_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|CP025232.1_965584_968284_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|CP025232.1_968363_968951_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP025232.1_969559_970360_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP025232.1_970587_972225_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP025232.1_972307_973606_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP025232.1_973741_974413_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP025232.1_976054_976852_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP025232.1_976939_977302_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP025232.1_977230_977401_+	NA	NA|600aa|down_3|CP025232.1_977725_979525_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP025232.1_979524_981237_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP025232.1_981312_982047_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_6|CP025232.1_981935_982178_-	NA	NA|318aa|down_7|CP025232.1_982259_983213_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|349aa|down_8|CP025232.1_985815_986862_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_9|CP025232.1_987112_988021_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD
GCA_004136075.1_ASM413607v1	CP025232	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1925 chromosome, complete genome	2	983901-985801	2,2,2,3,3	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder,CRT	no		cas3,WYL,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	31,29,29,29,29	31	Orphan	cas3,WYL,csa3,cas14j,DEDDh,DinG,c2c9_V-U4	NA|57aa|up_5|CP025232.1_977230_977401_+,NA|81aa|up_1|CP025232.1_981935_982178_-,NA	NA|433aa|up_9|CP025232.1_972307_973606_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_8|CP025232.1_973741_974413_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_7|CP025232.1_976054_976852_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_6|CP025232.1_976939_977302_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|up_5|CP025232.1_977230_977401_+	NA	NA|600aa|up_4|CP025232.1_977725_979525_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|CP025232.1_979524_981237_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|CP025232.1_981312_982047_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|up_1|CP025232.1_981935_982178_-	NA	NA|318aa|up_0|CP025232.1_982259_983213_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|349aa|down_0|CP025232.1_985815_986862_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP025232.1_987112_988021_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP025232.1_988030_989470_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP025232.1_989456_990062_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP025232.1_990079_990436_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP025232.1_990626_990938_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP025232.1_990956_991667_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP025232.1_991666_992146_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP025232.1_992142_993192_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP025232.1_993172_993934_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
