The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	335289	384336	4938997	transposase,integrase	Escherichia_phage(35.71%)	57	334426:334447	337275:337296
334426:334447	attL	CACTTTTCATCCGTCGTTGACA	NA	NA	NA	NA
QAZ84218.1|335289_335415_+|integrase	integrase	integrase	NA	NA	NA	NA
QAZ80291.1|335428_336451_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.4	4.6e-200
QAZ80292.1|336447_337230_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
QAZ80293.1|338170_338563_-	hypothetical protein	NA	NA	NA	NA	NA
337275:337296	attR	CACTTTTCATCCGTCGTTGACA	NA	NA	NA	NA
QAZ80294.1|338728_339298_-	inovirus Gp2 family protein	NA	NA	NA	NA	NA
QAZ80295.1|339948_340134_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ80296.1|340939_341218_+	AlpA family transcriptional regulator	NA	NA	NA	NA	NA
QAZ80297.1|341304_341907_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ80298.1|341812_342013_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ80299.1|341943_342129_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ80300.1|342228_343713_-	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
QAZ80301.1|344940_345813_+	GTPase family protein	NA	NA	NA	NA	NA
QAZ80302.1|346140_349260_+	autotransporter adhesin Ag43	NA	NA	NA	NA	NA
QAZ80303.1|349380_351897_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ80304.1|351972_352428_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ80305.1|352506_352740_+	DUF905 domain-containing protein	NA	NA	NA	NA	NA
QAZ80306.1|352684_352819_+	cytoplasmic protein	NA	NA	NA	NA	NA
QAZ80307.1|352839_353658_+	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	38.6	8.8e-45
QAZ80308.1|353712_354198_+	antirestriction protein	NA	A9J566	Pseudomonas_phage	31.5	2.6e-12
QAZ80309.1|354213_354690_+	DNA repair protein RadC	NA	NA	NA	NA	NA
QAZ80310.1|354752_354974_+	DUF987 domain-containing protein	NA	A0A142F0X9	Klebsiella_phage	45.8	1.4e-10
QAZ80311.1|355136_355505_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
QAZ80312.1|355594_355972_+	toxin	NA	NA	NA	NA	NA
QAZ80313.1|355968_356172_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ84219.1|356184_356298_+	DUF957 domain-containing protein	NA	NA	NA	NA	NA
QAZ84220.1|356786_356969_+	ethanolamine utilization protein	NA	NA	NA	NA	NA
QAZ80314.1|357069_357399_-	DUF496 family protein	NA	NA	NA	NA	NA
QAZ80315.1|357570_358629_-	FUSC family protein	NA	NA	NA	NA	NA
QAZ80316.1|358826_359300_-	DNA gyrase inhibitor SbmC	NA	NA	NA	NA	NA
QAZ80317.1|359418_360585_-	serine-type D-Ala-D-Ala carboxypeptidase DacD	NA	B6DZZ7	Stx2-converting_phage	99.5	5.9e-228
QAZ80318.1|360793_362221_+	exodeoxyribonuclease I	NA	NA	NA	NA	NA
QAZ80319.1|362263_362491_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ80320.1|362504_363563_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
QAZ80321.1|363741_365100_-	low-affinity putrescine importer PlaP	NA	NA	NA	NA	NA
QAZ84221.1|365089_365152_-	membrane protein YoeI	NA	NA	NA	NA	NA
QAZ80322.1|365366_366296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ80323.1|366341_367166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
QAZ80324.1|367248_367503_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
QAZ80325.1|367499_367751_-	antitoxin YefM	NA	NA	NA	NA	NA
QAZ84222.1|368033_368084_+	his operon leader peptide	NA	NA	NA	NA	NA
QAZ80326.1|368229_369129_+	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	94.7	1.8e-11
QAZ80327.1|369134_370439_+	histidinol dehydrogenase	NA	NA	NA	NA	NA
QAZ80328.1|370435_371506_+	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
QAZ80329.1|371505_372573_+	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
QAZ80330.1|372572_373163_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
QAZ80331.1|373162_373900_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
QAZ80332.1|373881_374658_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
QAZ80333.1|374651_375263_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	A0A2H4UVM0	Bodo_saltans_virus	29.3	6.0e-14
QAZ80334.1|375367_375826_-|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	32.3	1.9e-12
QAZ84223.1|375782_375986_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ80335.1|376010_376991_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA	NA
QAZ80336.1|377685_378383_-|transposase	IS1 family transposase	transposase	A0A077SLN4	Escherichia_phage	93.1	3.0e-126
QAZ80337.1|378805_379972_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	53.0	1.1e-109
QAZ80338.1|380605_381302_+|transposase	IS1 family transposase	transposase	A0A077SLN4	Escherichia_phage	93.1	3.0e-126
QAZ80339.1|381237_381423_-	hypothetical protein	NA	A0A2L1IV26	Escherichia_phage	96.2	2.4e-06
QAZ80340.1|381429_382767_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
QAZ80341.1|382929_384336_-	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	4.0e-37
>prophage 2
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	462193	471635	4938997		Enterobacteria_phage(85.71%)	10	NA	NA
QAZ80398.1|462193_463330_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
QAZ80399.1|463326_465327_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
QAZ80400.1|465451_465913_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
QAZ80401.1|465953_466424_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
QAZ80402.1|466470_467190_-	DNA-binding response regulator	NA	NA	NA	NA	NA
QAZ80403.1|467186_468872_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
QAZ80404.1|469093_469825_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
QAZ80405.1|469884_469992_+	protein YohO	NA	NA	NA	NA	NA
QAZ80406.1|469972_470704_-	ABC transporter permease	NA	NA	NA	NA	NA
QAZ80407.1|470708_471635_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
>prophage 3
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	988801	996567	4938997	transposase	Escherichia_phage(66.67%)	6	NA	NA
QAZ80839.1|988801_989284_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
QAZ80840.1|990026_991256_+	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	100.0	1.5e-234
QAZ80841.1|991294_991711_+	hypothetical protein	NA	A0A1B5FPM5	Escherichia_phage	100.0	1.1e-72
QAZ80842.1|991782_993531_-	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	99.8	0.0e+00
QAZ80843.1|993532_995251_-	ATP-binding protein	NA	A0A1B5FPD5	Escherichia_phage	99.8	3.2e-307
QAZ80844.1|995404_996567_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
>prophage 4
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	1067716	1074856	4938997		Escherichia_phage(83.33%)	6	NA	NA
QAZ80914.1|1067716_1070278_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.3e-30
QAZ80915.1|1070383_1071040_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	47.9	1.1e-50
QAZ80916.1|1071090_1071858_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
QAZ80917.1|1072053_1072962_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
QAZ80918.1|1072958_1074221_+	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	1.3e-135
QAZ80919.1|1074217_1074856_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
>prophage 5
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	3187446	3252569	4938997	transposase,plate,protease,tRNA	Salmonella_phage(20.0%)	53	NA	NA
QAZ82700.1|3187446_3188799_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
QAZ82701.1|3188828_3191261_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
QAZ82702.1|3191382_3191868_+	chaperone protein Skp	NA	NA	NA	NA	NA
QAZ82703.1|3191871_3192897_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
QAZ82704.1|3193001_3193457_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
QAZ82705.1|3193460_3194249_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
QAZ82706.1|3194248_3195397_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
QAZ82707.1|3195393_3195990_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	39.9	1.0e-26
QAZ82708.1|3196026_3199509_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	2.2e-209
QAZ82709.1|3199521_3200481_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
QAZ82710.1|3200579_3202721_+	lysine decarboxylase LdcC	NA	NA	NA	NA	NA
QAZ82711.1|3202777_3203167_+	VOC family protein	NA	NA	NA	NA	NA
QAZ82712.1|3203231_3204530_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
QAZ82713.1|3204578_3204839_-	Rho-binding antiterminator	NA	NA	NA	NA	NA
QAZ82714.1|3204825_3205026_-	YaeP family protein	NA	NA	NA	NA	NA
QAZ82715.1|3205191_3205737_+	YaeQ family protein	NA	NA	NA	NA	NA
QAZ82716.1|3205733_3206156_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
QAZ82717.1|3206169_3206880_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA	NA
QAZ82718.1|3207034_3207859_-	endopeptidase	NA	NA	NA	NA	NA
QAZ82719.1|3207912_3209631_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
QAZ82720.1|3209741_3210449_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
QAZ82721.1|3210445_3210850_-	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
QAZ82722.1|3210967_3211783_-	methionine ABC transporter substrate-binding protein MetQ	NA	NA	NA	NA	NA
QAZ82723.1|3211822_3212476_-	methionine ABC transporter	NA	NA	NA	NA	NA
QAZ82724.1|3212468_3213500_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.2	7.2e-36
QAZ82725.1|3213687_3214263_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
QAZ82726.1|3220329_3221592_+|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
QAZ82727.1|3221915_3223061_+	class C beta-lactamase CMY-2	NA	NA	NA	NA	NA
QAZ82728.1|3223339_3224143_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	36.1	1.6e-38
QAZ82729.1|3224139_3225054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ82730.1|3225294_3226095_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
QAZ82731.1|3226172_3226943_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QAZ82732.1|3226990_3228349_-	murein transglycosylase D	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.0	5.8e-09
QAZ82733.1|3228420_3229176_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
QAZ82734.1|3229209_3229932_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QAZ82735.1|3229928_3230396_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	62.4	2.3e-50
QAZ82736.1|3230460_3231192_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.0	3.4e-40
QAZ82737.1|3231730_3232516_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ82738.1|3232652_3233132_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ82739.1|3233141_3234056_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ82740.1|3234099_3234582_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
QAZ82741.1|3234605_3235958_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ84322.1|3235968_3239403_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
QAZ82742.1|3239511_3240924_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
QAZ82743.1|3240928_3241672_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
QAZ82744.1|3241668_3244476_-	type VI secretion system ATPase TssH	NA	H6X3M6	Enterobacteria_phage	28.1	4.0e-81
QAZ82745.1|3244484_3245246_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
QAZ82746.1|3245250_3246582_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
QAZ82747.1|3246584_3247109_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
QAZ82748.1|3247105_3248386_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
QAZ82749.1|3248410_3249493_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
QAZ82750.1|3249653_3250866_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	57.1	8.3e-100
QAZ82751.1|3250859_3252569_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 6
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	3285149	3383610	4938997	holin,tail,head,integrase,capsid,terminase,portal,lysis	Enterobacteria_phage(41.54%)	96	3289006:3289052	3337667:3337713
QAZ82781.1|3285149_3286205_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	61.1	9.1e-119
QAZ82782.1|3286492_3287596_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
QAZ82783.1|3287607_3288861_+	gamma-glutamyl-phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	5.8e-96
3289006:3289052	attL	ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAT	NA	NA	NA	NA
QAZ82784.1|3289065_3290229_-|integrase	integrase	integrase	U5P434	Shigella_phage	99.2	1.5e-228
QAZ82785.1|3290105_3290540_-	DNA-binding protein	NA	U5P4J3	Shigella_phage	99.3	2.4e-78
QAZ82786.1|3290455_3290761_-	hypothetical protein	NA	U5P0J0	Shigella_phage	97.0	2.2e-49
QAZ82787.1|3290760_3291123_-	hypothetical protein	NA	K7PH61	Enterobacteria_phage	98.3	4.4e-65
QAZ82788.1|3291113_3291650_-	HD family hydrolase	NA	U5P0T3	Shigella_phage	98.3	4.8e-100
QAZ82789.1|3291777_3292602_-	DUF2303 family protein	NA	U5P439	Shigella_phage	100.0	6.0e-150
QAZ82790.1|3292667_3293030_-	hypothetical protein	NA	Q8SBF8	Shigella_phage	100.0	8.6e-61
QAZ82791.1|3293500_3294016_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ82792.1|3294230_3294905_-	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	100.0	1.2e-132
QAZ82793.1|3294995_3295196_+	transcriptional regulator	NA	U5P445	Shigella_phage	100.0	7.9e-32
QAZ82794.1|3295239_3295791_+	hypothetical protein	NA	K7PGU3	Enterobacteria_phage	94.5	1.3e-97
QAZ82795.1|3295787_3296624_+	ash family protein	NA	Q8SBF3	Shigella_phage	99.3	2.1e-150
QAZ84324.1|3296628_3296853_+	hypothetical protein	NA	A0A291AX25	Escherichia_phage	97.3	3.5e-36
QAZ82796.1|3296849_3297668_+	helix-turn-helix domain-containing protein	NA	Q8SBF1	Shigella_phage	99.6	8.9e-122
QAZ82797.1|3297664_3298159_+	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	99.4	2.5e-87
QAZ82798.1|3298158_3298812_+	phage N-6-adenine-methyltransferase	NA	A0A0P0ZCC0	Stx2-converting_phage	99.5	4.3e-127
QAZ82799.1|3298808_3299135_+	LexA family transcriptional regulator	NA	A0A0N7KZF7	Stx2-converting_phage	100.0	9.2e-54
QAZ82800.1|3299131_3299521_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0ZD39	Stx2-converting_phage	99.2	1.6e-68
QAZ82801.1|3299540_3300350_+	KilA-N domain-containing protein	NA	Q8SBE6	Shigella_phage	98.5	8.2e-152
QAZ82802.1|3300357_3301347_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	98.2	1.5e-192
QAZ82803.1|3301361_3301730_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	86.7	2.7e-54
QAZ82804.1|3301758_3303090_-	NTPase	NA	R9TRQ8	Vibrio_phage	29.4	3.2e-20
QAZ82805.1|3303361_3303556_+	TrmB family transcriptional regulator	NA	Q8SBE3	Shigella_phage	100.0	1.8e-28
QAZ82806.1|3303705_3304758_+	site-specific DNA-methyltransferase	NA	A5LH81	Enterobacteria_phage	98.9	2.6e-206
QAZ82807.1|3304825_3305041_+|holin	holin	holin	A5LH82	Enterobacteria_phage	100.0	9.0e-34
QAZ82808.1|3305040_3305538_+	lysozyme	NA	M1FJA0	Enterobacteria_phage	97.6	7.1e-90
QAZ82809.1|3305534_3305993_+|lysis	lysis protein	lysis	K7PJW6	Enterobacteria_phage	95.4	6.2e-72
QAZ82810.1|3306194_3306692_+	DNA-binding protein	NA	A0A220NRM9	Escherichia_phage	100.0	1.1e-93
QAZ82811.1|3306688_3306946_+	hypothetical protein	NA	A0A0P0ZBT1	Stx2-converting_phage	100.0	5.0e-39
QAZ82812.1|3307232_3307643_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
QAZ82813.1|3307699_3307933_-	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	96.3	2.5e-21
QAZ82814.1|3307948_3308206_-	hypothetical protein	NA	A0A0K2FJC5	Escherichia_phage	97.1	8.9e-12
QAZ82815.1|3308321_3308867_+|terminase	terminase small subunit	terminase	A0A0K2FIG2	Enterobacteria_phage	99.4	4.7e-95
QAZ82816.1|3308841_3310767_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.2	0.0e+00
QAZ82817.1|3310763_3310970_+|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
QAZ82818.1|3310966_3312568_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.2	4.9e-310
QAZ82819.1|3312548_3313868_+	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	98.2	3.4e-232
QAZ82820.1|3313877_3314210_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	99.1	6.5e-55
QAZ82821.1|3314265_3315291_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	97.7	1.8e-188
QAZ82822.1|3315332_3315728_+	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	96.2	5.2e-59
QAZ82823.1|3315739_3316093_+|tail	phage tail protein	tail	A0A2R9YJJ5	Escherichia_phage	97.4	6.4e-61
QAZ82824.1|3316104_3316683_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	99.5	5.9e-80
QAZ82825.1|3316679_3317075_+|tail	phage tail protein	tail	A0A2R9YJI2	Escherichia_phage	98.5	8.5e-70
QAZ82826.1|3317082_3317823_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	96.7	1.2e-128
QAZ82827.1|3317838_3318261_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	85.0	5.0e-60
QAZ82828.1|3318242_3318677_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
QAZ82829.1|3318669_3321225_+|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	93.9	0.0e+00
QAZ82830.1|3321221_3321551_+|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
QAZ82831.1|3321550_3322249_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.3	4.7e-132
QAZ82832.1|3322254_3322998_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	96.8	7.3e-147
QAZ82833.1|3322934_3323567_+|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	100.0	5.9e-97
QAZ82834.1|3327194_3327794_+	Ail/Lom family protein	NA	A5LH44	Enterobacteria_phage	97.0	6.3e-109
QAZ82835.1|3327858_3330930_+|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	82.1	1.9e-68
QAZ82836.1|3330929_3331514_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.8	1.6e-104
QAZ82837.1|3337875_3339054_+	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	62.6	1.7e-145
3337667:3337713	attR	ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAT	NA	NA	NA	NA
QAZ82838.1|3339055_3340252_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
QAZ82839.1|3340255_3342259_+	RNA-directed DNA polymerase	NA	A0A0H4TEY7	Erysipelothrix_phage	26.4	2.2e-25
QAZ82840.1|3342707_3342980_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ82841.1|3342981_3343536_-	phage polarity suppression protein	NA	NA	NA	NA	NA
QAZ82842.1|3343532_3344285_-	septation initiation protein	NA	NA	NA	NA	NA
QAZ82843.1|3344531_3344744_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ82844.1|3345188_3345449_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	65.1	1.3e-23
QAZ82845.1|3345445_3345994_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	56.9	1.0e-25
QAZ82846.1|3345993_3346218_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ82847.1|3346214_3346538_+	DNA replication protein	NA	NA	NA	NA	NA
QAZ82848.1|3346552_3348886_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	72.4	0.0e+00
QAZ82849.1|3348979_3350077_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ82850.1|3350606_3351017_-	transcriptional regulator	NA	NA	NA	NA	NA
QAZ82851.1|3350995_3351952_-	XdhC family protein	NA	NA	NA	NA	NA
QAZ82852.1|3351961_3354160_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	25.8	2.5e-38
QAZ82853.1|3355110_3355800_-	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
QAZ82854.1|3357077_3357407_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
QAZ82855.1|3357719_3358430_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ82856.1|3358398_3360042_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ82857.1|3360031_3362557_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
QAZ82858.1|3362582_3363251_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ82859.1|3363308_3363896_-	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA	NA
QAZ82860.1|3363970_3364513_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ82861.1|3365335_3365563_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ82862.1|3365597_3365738_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
QAZ84325.1|3365737_3366001_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
QAZ82863.1|3366363_3366465_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ82864.1|3367580_3371834_+	intimin-like adhesin FdeC	NA	NA	NA	NA	NA
QAZ82865.1|3371954_3372812_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QAZ82866.1|3373060_3373927_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.7	9.3e-53
QAZ82867.1|3374090_3374684_-	protein RclC	NA	NA	NA	NA	NA
QAZ82868.1|3374695_3374932_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
QAZ82869.1|3375040_3376366_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	1.1e-113
QAZ82870.1|3376591_3377446_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAZ82871.1|3378015_3378687_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
QAZ82872.1|3378697_3380125_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
QAZ82873.1|3380117_3380813_+	lactate utilization protein C	NA	NA	NA	NA	NA
QAZ82874.1|3381939_3383610_-|holin	oxygen-dependent choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.7e-61
>prophage 7
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	3880704	3975535	4938997	transposase,tail,head,integrase,plate,capsid,terminase,portal,lysis	Salmonella_phage(64.15%)	96	3900390:3900405	3978612:3978627
QAZ83287.1|3880704_3881685_+|transposase	IS110-like element IS621 family transposase	transposase	NA	NA	NA	NA
QAZ83288.1|3881944_3882427_-	NADAR family protein	NA	A0A0H3TLU0	Faustovirus	52.7	1.5e-36
QAZ83289.1|3882546_3884697_+	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	26.0	7.4e-43
QAZ83290.1|3884724_3885687_+	DNA-binding protein YbiB	NA	NA	NA	NA	NA
QAZ83291.1|3885827_3886913_+	dehydrogenase	NA	NA	NA	NA	NA
QAZ83292.1|3887193_3888174_-|transposase	IS110-like element IS621 family transposase	transposase	NA	NA	NA	NA
QAZ83293.1|3888443_3888704_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
QAZ83294.1|3888968_3889235_-	DksA/TraR family C4-type zinc finger protein	NA	E5G6L7	Salmonella_phage	45.6	6.9e-07
QAZ83295.1|3889308_3889986_-	Fe2+-dependent dioxygenase	NA	Q5GQB0	Synechococcus_phage	30.1	1.2e-18
QAZ83296.1|3890027_3892310_-	catecholate siderophore receptor Fiu	NA	NA	NA	NA	NA
QAZ83297.1|3892573_3892834_-	DUF1471 domain-containing protein	NA	A0A1B2ICL8	Erwinia_phage	51.0	1.6e-05
QAZ83298.1|3893028_3894036_+	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA	NA
QAZ83299.1|3894032_3896258_-	moderate conductance mechanosensitive channel YbiO	NA	NA	NA	NA	NA
QAZ83300.1|3896374_3897097_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	41.8	2.5e-35
QAZ83301.1|3897093_3897753_-	glutamine ABC transporter permease	NA	NA	NA	NA	NA
QAZ83302.1|3897891_3898638_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAZ83303.1|3899041_3899545_-	DNA starvation/stationary phase protection protein	NA	A0A222YYG6	Streptomyces_phage	29.0	4.9e-06
QAZ83304.1|3899840_3900728_-	threonine/homoserine exporter RhtA	NA	NA	NA	NA	NA
3900390:3900405	attL	CAGCGCCACCGCCAGT	NA	NA	NA	NA
QAZ84337.1|3900962_3901028_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ83305.1|3901080_3901596_+	outer membrane protein X	NA	H6WZM8	Escherichia_phage	33.8	1.1e-16
QAZ83306.1|3901644_3903228_-	phosphoethanolamine transferase OpgE	NA	NA	NA	NA	NA
QAZ83307.1|3903499_3903628_-	manganase accumulation protein MntS	NA	NA	NA	NA	NA
QAZ83308.1|3903813_3904281_+	transcriptional regulator MntR	NA	NA	NA	NA	NA
QAZ83309.1|3904277_3905396_+	anion transporter	NA	NA	NA	NA	NA
QAZ83310.1|3905454_3906375_-	transpeptidase	NA	NA	NA	NA	NA
QAZ83311.1|3906593_3908186_+	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	28.7	6.9e-62
QAZ83312.1|3908197_3908473_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ83313.1|3908464_3909445_+|transposase	IS110-like element IS621 family transposase	transposase	NA	NA	NA	NA
QAZ83314.1|3910087_3911300_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	57.1	8.3e-100
QAZ83315.1|3912374_3913190_-	HAD family hydrolase	NA	NA	NA	NA	NA
QAZ83316.1|3913335_3915768_-	glycyl radical protein	NA	A0A076YHZ7	Citrobacter_phage	43.5	6.1e-09
QAZ83317.1|3915773_3916673_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
QAZ83318.1|3916803_3917466_+	fructose-6-phosphate aldolase	NA	C7BV14	Synechococcus_phage	32.7	9.7e-26
QAZ83319.1|3917644_3918394_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
QAZ83320.1|3918393_3919629_-	molybdopterin molybdotransferase	NA	NA	NA	NA	NA
QAZ83321.1|3919832_3920798_+	beta-aspartyl-peptidase	NA	NA	NA	NA	NA
QAZ84338.1|3920784_3922656_+	glutathione import ATP-binding protein GsiA	NA	G9BWD6	Planktothrix_phage	29.7	4.0e-16
QAZ83322.1|3922675_3924214_+	glutathione ABC transporter substrate-binding protein GsiB	NA	NA	NA	NA	NA
QAZ83323.1|3924231_3925152_+	glutathione ABC transporter permease	NA	NA	NA	NA	NA
QAZ83324.1|3925154_3926066_+	glutathione ABC transporter permease	NA	NA	NA	NA	NA
QAZ83325.1|3926243_3928592_+	EAL domain-containing protein	NA	NA	NA	NA	NA
QAZ83326.1|3929103_3930078_-|transposase	IS30-like element ISApl1 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.1	2.3e-52
QAZ83327.1|3931046_3932372_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
QAZ83328.1|3932584_3932968_+	biofilm regulator BssR	NA	NA	NA	NA	NA
QAZ83329.1|3934189_3934816_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
QAZ83330.1|3935062_3936265_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	48.0	8.2e-100
QAZ83331.1|3936311_3937070_-	DNA-binding transcriptional repressor DeoR	NA	NA	NA	NA	NA
QAZ83332.1|3937127_3937724_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
QAZ83333.1|3938008_3939241_+	multidrug efflux MFS transporter MdfA	NA	NA	NA	NA	NA
QAZ83334.1|3939281_3939566_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ83335.1|3939651_3940467_-	HAD family hydrolase	NA	NA	NA	NA	NA
QAZ83336.1|3940466_3941675_-	MFS transporter	NA	NA	NA	NA	NA
QAZ83337.1|3941758_3942295_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
QAZ83338.1|3942398_3943121_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ83339.1|3943131_3944163_-|integrase	integrase	integrase	A0A218M4I3	Erwinia_phage	56.7	5.6e-105
QAZ83340.1|3944349_3944541_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	68.2	4.0e-09
QAZ83341.1|3944556_3945123_-	phage repressor protein	NA	A0A1S6KZZ7	Salmonella_phage	41.3	9.7e-35
QAZ83342.1|3945248_3945470_+	regulator	NA	NA	NA	NA	NA
QAZ83343.1|3945502_3946027_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.8	2.1e-84
QAZ83344.1|3946020_3946221_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
QAZ83345.1|3946184_3946526_+	hypothetical protein	NA	E5G6L5	Salmonella_phage	99.1	4.6e-56
QAZ83346.1|3946593_3946827_+	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	93.5	5.0e-30
QAZ83347.1|3946826_3947054_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
QAZ83348.1|3947050_3947908_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.4	1.6e-158
QAZ83349.1|3947904_3950319_+	replication endonuclease	NA	E5G6L9	Salmonella_phage	98.3	0.0e+00
QAZ84339.1|3950472_3950661_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	98.4	5.5e-27
QAZ83350.1|3950599_3950905_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
QAZ83351.1|3951064_3951490_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ83352.1|3952283_3952910_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ83353.1|3952994_3954062_-|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	88.0	1.0e-170
QAZ83354.1|3954061_3955828_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.3	0.0e+00
QAZ83355.1|3955970_3956804_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	90.3	4.3e-124
QAZ83356.1|3956820_3957879_+|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	93.4	2.9e-181
QAZ83357.1|3957882_3958533_+	hypothetical protein	NA	E5G6M7	Salmonella_phage	95.8	1.5e-111
QAZ83358.1|3958628_3959093_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	89.6	2.2e-77
QAZ83359.1|3959092_3959296_+|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	92.5	1.4e-31
QAZ83360.1|3959299_3959515_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	80.3	1.8e-26
QAZ83361.1|3959495_3960011_+	lysozyme	NA	E5G6N1	Salmonella_phage	93.6	1.9e-90
QAZ83362.1|3960007_3960436_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	92.2	8.6e-60
QAZ83363.1|3960365_3960569_+	hypothetical protein	NA	A0A1S6KZX6	Salmonella_phage	79.1	4.7e-24
QAZ83364.1|3960531_3960963_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.7	1.3e-71
QAZ83365.1|3960955_3961402_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	78.4	4.3e-54
QAZ83366.1|3961475_3963251_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
QAZ83367.1|3964106_3964466_+|plate	baseplate assembly protein	plate	A0A1S6KZZ4	Salmonella_phage	87.4	2.5e-52
QAZ83368.1|3964452_3965361_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	91.4	2.2e-145
QAZ83369.1|3965353_3965959_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	92.5	5.2e-111
QAZ83370.1|3965955_3967875_+|tail	phage tail protein	tail	A0A0F7LDR4	Escherichia_phage	47.4	8.0e-81
QAZ83371.1|3967874_3968288_+|tail	phage tail protein	tail	U5P0S4	Shigella_phage	73.0	1.5e-21
QAZ83372.1|3968394_3969561_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	89.5	8.9e-200
QAZ83373.1|3969570_3970086_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	95.9	5.6e-90
QAZ83374.1|3970140_3970443_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	89.0	5.3e-40
QAZ83375.1|3970457_3970577_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.8e-13
QAZ83376.1|3970569_3973647_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	62.8	0.0e+00
QAZ83377.1|3973643_3974129_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	80.6	1.8e-66
QAZ83378.1|3974125_3975226_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.3	2.9e-176
QAZ84340.1|3975316_3975535_+	transcriptional regulator	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
3978612:3978627	attR	ACTGGCGGTGGCGCTG	NA	NA	NA	NA
>prophage 8
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	4007961	4018561	4938997	protease	Vibrio_phage(33.33%)	6	NA	NA
QAZ83410.1|4007961_4009908_+	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
QAZ83411.1|4009980_4010205_-	cold-shock protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
QAZ83412.1|4010527_4010848_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
QAZ83413.1|4010878_4013155_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	1.9e-166
QAZ83414.1|4014347_4015331_+	type I-F CRISPR-associated endonuclease Cas1	NA	A0A2D0YFC9	Vibrio_phage	35.2	2.9e-42
QAZ83415.1|4015327_4018561_+	type I-F CRISPR-associated helicase Cas3	NA	A0A2I7RCU8	Vibrio_phage	28.8	2.8e-62
>prophage 9
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	4754374	4786939	4938997	tail,protease,terminase,portal,lysis	Enterobacteria_phage(56.67%)	36	NA	NA
QAZ84026.1|4754374_4754956_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.3	2.5e-102
QAZ84027.1|4754955_4758486_-	short-chain fatty acid transporter	NA	X2KTY7	Enterobacteria_phage	35.5	1.9e-11
QAZ84028.1|4758550_4759150_-	Ail/Lom family protein	NA	H6WZM8	Escherichia_phage	94.0	1.2e-104
QAZ84029.1|4759218_4762698_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	90.7	0.0e+00
QAZ84030.1|4762758_4763406_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	96.7	2.5e-111
QAZ84031.1|4763303_4764047_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	95.5	5.0e-148
QAZ84032.1|4764052_4764751_-|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	99.6	2.3e-134
QAZ84033.1|4764760_4765090_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	99.1	5.1e-60
QAZ84034.1|4765089_4768155_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	97.2	0.0e+00
QAZ84035.1|4768126_4768456_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
QAZ84374.1|4768464_4768851_-|tail	phage minor tail protein G	tail	A0A291AWW5	Escherichia_phage	100.0	1.6e-65
QAZ84036.1|4768911_4769655_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	100.0	7.8e-133
QAZ84037.1|4769666_4770068_-|tail	phage tail protein	tail	A0A291AWY2	Escherichia_phage	100.0	8.3e-73
QAZ84038.1|4770064_4770643_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	99.5	7.2e-102
QAZ84039.1|4770654_4770930_-	DNA breaking-rejoining protein	NA	K7PH43	Enterobacteria_phage	98.9	8.6e-45
QAZ84040.1|4770922_4771246_-	DUF2190 family protein	NA	A5LH31	Enterobacteria_phage	100.0	8.5e-52
QAZ84041.1|4771332_4773360_-|protease	Clp protease ClpP	protease	A5LH30	Enterobacteria_phage	99.4	0.0e+00
QAZ84042.1|4773304_4774813_-|portal	phage portal protein	portal	K7PJP3	Enterobacteria_phage	99.6	3.5e-289
QAZ84043.1|4774812_4775025_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	100.0	1.1e-31
QAZ84044.1|4775021_4777124_-|terminase	phage terminase large subunit family protein	terminase	A0A291AWY5	Escherichia_phage	97.4	0.0e+00
QAZ84045.1|4777123_4777618_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	100.0	9.9e-84
QAZ84046.1|4778189_4778882_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ84047.1|4779050_4779587_-	hypothetical protein	NA	K7PHH7	Enterobacteria_phage	83.5	1.1e-72
QAZ84048.1|4779583_4780126_-	lysozyme	NA	Q08J98	Stx2-converting_phage	87.2	3.4e-93
QAZ84049.1|4780231_4780504_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ84050.1|4780469_4780814_-	DUF1327 domain-containing protein	NA	K7PGU6	Enterobacteria_phage	95.2	2.2e-37
QAZ84051.1|4780818_4781034_-|lysis	lysis protein S	lysis	A5LH82	Enterobacteria_phage	95.8	5.9e-33
QAZ84375.1|4781285_4781660_-	tolA family protein	NA	NA	NA	NA	NA
QAZ84052.1|4781831_4782260_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
QAZ84053.1|4782626_4782758_-	DUF3927 domain-containing protein	NA	H6WZJ7	Escherichia_phage	100.0	3.7e-06
QAZ84054.1|4782793_4783120_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ84055.1|4783658_4784480_-	antitermination protein	NA	K7PKS8	Enterobacteria_phage	54.0	5.9e-81
QAZ84056.1|4784476_4784851_-	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	62.7	1.1e-34
QAZ84057.1|4785913_4786192_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	9.7e-12
QAZ84058.1|4786258_4786510_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ84059.1|4786726_4786939_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	94.3	1.1e-26
>prophage 10
CP034399	Escherichia coli strain CRE1 chromosome, complete genome	4938997	4790914	4806738	4938997		Salmonella_phage(20.0%)	21	NA	NA
QAZ84065.1|4790914_4791880_-	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	1.3e-55
QAZ84066.1|4791860_4792382_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ84067.1|4792365_4792593_-	transcriptional regulator	NA	NA	NA	NA	NA
QAZ84068.1|4792670_4793078_+	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	46.2	3.3e-24
QAZ84069.1|4793270_4793426_+	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
QAZ84070.1|4793585_4793804_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ84376.1|4793807_4793972_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ84071.1|4794371_4794560_+	division inhibition protein DicB	NA	NA	NA	NA	NA
QAZ84072.1|4794556_4794748_+	DUF1482 family protein	NA	NA	NA	NA	NA
QAZ84073.1|4794840_4797312_+	exonuclease	NA	A0A192Y6E0	Salmonella_phage	56.7	8.5e-59
QAZ84377.1|4797399_4797636_+	DNA-binding protein	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
QAZ84074.1|4797670_4798951_+	DUF3596 domain-containing protein	NA	B6DZ48	Enterobacteria_phage	62.3	1.9e-155
QAZ84075.1|4798952_4799081_-	transporter	NA	NA	NA	NA	NA
QAZ84076.1|4799138_4800158_-	starvation-sensing protein RspB	NA	E3SJ82	Synechococcus_phage	25.9	9.7e-17
QAZ84077.1|4800169_4801384_-	D-galactonate dehydratase family protein	NA	Q6A202	Oenococcus_phage	29.0	1.1e-46
QAZ84078.1|4801589_4801916_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
QAZ84079.1|4802050_4802392_+	DUF1283 family protein	NA	NA	NA	NA	NA
QAZ84080.1|4802426_4802987_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
QAZ84081.1|4802989_4803700_-	YnfC family lipoprotein	NA	NA	NA	NA	NA
QAZ84378.1|4803807_4804113_+	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
QAZ84082.1|4804311_4806738_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.2	1.3e-213
>prophage 1
CP034396	Escherichia coli strain CRE1 plasmid pCRE1.1, complete sequence	134635	1967	49345	134635	protease,transposase	Enterobacteria_phage(30.77%)	46	NA	NA
QAZ79695.1|1967_2672_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAZ79696.1|2683_3109_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAZ79697.1|3258_4119_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
QAZ79698.1|5467_6304_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
QAZ79699.1|6303_7107_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
QAZ79700.1|7167_7983_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	3.5e-09
QAZ79701.1|8290_9142_-	replication protein	NA	NA	NA	NA	NA
QAZ79702.1|9897_10602_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAZ79703.1|10638_11766_-	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
QAZ79704.1|11816_12062_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ79705.1|12067_12259_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ79706.1|12740_13283_-	tunicamycin resistance protein	NA	NA	NA	NA	NA
QAZ79707.1|13295_14156_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
QAZ79708.1|15370_16291_+|transposase	IS4 family transposase	transposase	A4KWT9	Enterobacteria_phage	100.0	2.7e-175
QAZ79709.1|16324_17029_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAZ79821.1|16999_17239_+	hypothetical protein	NA	Q1MVP4	Enterobacteria_phage	100.0	1.6e-18
QAZ79710.1|17421_18282_+	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
QAZ79711.1|18558_19869_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
QAZ79712.1|20153_20486_-	mRNA interferase PemK	NA	NA	NA	NA	NA
QAZ79713.1|20487_20745_-	antitoxin PemI	NA	NA	NA	NA	NA
QAZ79714.1|20837_21491_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAZ79715.1|21680_22067_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ79716.1|22429_23287_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
QAZ79822.1|23279_23354_-	RepA leader peptide Tap	NA	NA	NA	NA	NA
QAZ79717.1|23437_23575_+	replication protein RepA	NA	NA	NA	NA	NA
QAZ79718.1|23715_25257_+|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.3e-129
QAZ79719.1|26161_26416_-	replication regulatory protein RepA	NA	NA	NA	NA	NA
QAZ79720.1|26712_26847_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA	NA
QAZ79721.1|27717_27930_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ79722.1|28060_28621_-	fertility inhibition protein FinO	NA	NA	NA	NA	NA
QAZ79723.1|28675_29422_-	type-F conjugative transfer system pilin acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	30.9	3.2e-09
QAZ79724.1|29441_34712_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
QAZ79725.1|34711_36910_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
QAZ79726.1|36906_37686_-	hypothetical protein	NA	NA	NA	NA	NA
QAZ79727.1|37888_38620_-	complement resistance protein TraT	NA	NA	NA	NA	NA
QAZ79728.1|38651_39149_-	entry exclusion protein	NA	NA	NA	NA	NA
QAZ79729.1|39167_41987_-	conjugal transfer protein TraG	NA	NA	NA	NA	NA
QAZ79730.1|41983_43357_-	conjugal transfer protein TraH	NA	NA	NA	NA	NA
QAZ79731.1|43343_43769_-	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
QAZ79732.1|43716_44064_-	conjugal transfer protein TrbJ	NA	NA	NA	NA	NA
QAZ79733.1|43993_44539_-	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA	NA
QAZ79734.1|44525_44810_-	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA	NA
QAZ79735.1|44936_45257_-	conjugal transfer protein TrbA	NA	NA	NA	NA	NA
QAZ79736.1|47012_47417_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	100.0	3.0e-70
QAZ79737.1|47413_47761_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	2.6e-62
QAZ79738.1|47809_49345_+|transposase	IS66-like element ISEc22 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	99.4	3.5e-289
>prophage 2
CP034396	Escherichia coli strain CRE1 plasmid pCRE1.1, complete sequence	134635	104987	115552	134635		Escherichia_phage(44.44%)	9	NA	NA
QAZ79796.1|104987_108104_-	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	24.0	2.9e-27
QAZ79797.1|108225_109509_-	restriction endonuclease subunit S	NA	F2Y1N5	Organic_Lake_phycodnavirus	26.5	2.2e-10
QAZ79798.1|109505_111062_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.5	7.1e-104
QAZ79799.1|111244_111466_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A222YXU1	Escherichia_phage	100.0	6.7e-32
QAZ79800.1|111465_111846_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A077SK56	Escherichia_phage	100.0	1.1e-63
QAZ79801.1|111850_112030_+	PdcA protein	NA	Q71TH5	Escherichia_phage	96.6	3.5e-23
QAZ79802.1|112057_112417_+	pdcB	NA	A0A077SLM1	Escherichia_phage	98.9	5.0e-45
QAZ79803.1|113549_114527_+	repFIB replication protein A	NA	J9Q7H0	Salmonella_phage	59.2	1.4e-100
QAZ79804.1|114811_115552_-	site-specific recombinase	NA	I3WFA4	Macacine_betaherpesvirus	57.6	2.0e-24
>prophage 1
CP034398	Escherichia coli strain CRE1 plasmid pCRE1.4, complete sequence	41185	0	6444	41185		Vibrio_phage(33.33%)	9	NA	NA
QAZ79949.1|29_815_-	sprT domain-containing protein	NA	NA	NA	NA	NA
QAZ79950.1|994_1417_+	ArdB protein	NA	NA	NA	NA	NA
QAZ79992.1|1533_1725_+	hypothetical protein	NA	A0A2I7QQE5	Vibrio_phage	52.4	3.8e-07
QAZ79951.1|1728_2259_+	antirestriction protein ArdR	NA	NA	NA	NA	NA
QAZ79952.1|3434_4226_+	hypothetical protein	NA	A0A2H4PB09	Aphanizomenon_phage	55.7	4.4e-09
QAZ79953.1|4394_4664_+	cobalamin biosynthesis protein CbiX	NA	NA	NA	NA	NA
QAZ79954.1|4705_4906_+	hypothetical protein	NA	NA	NA	NA	NA
QAZ79955.1|4960_5458_+	ROS/MUCR transcriptional regulator domain protein	NA	NA	NA	NA	NA
QAZ79956.1|6237_6444_+	DUF905 domain-containing protein	NA	A0A192Y879	Salmonella_phage	45.6	6.9e-07
>prophage 2
CP034398	Escherichia coli strain CRE1 plasmid pCRE1.4, complete sequence	41185	11137	19709	41185	transposase	Cedratvirus(25.0%)	5	NA	NA
QAZ79960.1|11137_14344_+	conjugative relaxase	NA	A0A2R8FDQ9	Cedratvirus	30.5	2.4e-05
QAZ79961.1|14606_17504_-|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
QAZ79962.1|17598_18204_+	DNA resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
QAZ79963.1|18208_18577_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAZ79964.1|18589_19709_+|transposase	IS3-like element ISSen4 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	1.7e-51
>prophage 3
CP034398	Escherichia coli strain CRE1 plasmid pCRE1.4, complete sequence	41185	24713	25241	41185		Wolbachia_phage(100.0%)	1	NA	NA
QAZ79971.1|24713_25241_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	38.7	1.1e-24
>prophage 4
CP034398	Escherichia coli strain CRE1 plasmid pCRE1.4, complete sequence	41185	37222	37408	41185		Clostridium_phage(100.0%)	1	NA	NA
QAZ79986.1|37222_37408_+	ribbon-helix-helix domain-containing protein	NA	A0A0A7RUX5	Clostridium_phage	57.8	2.6e-05
