The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033350	Salmonella enterica subsp. enterica strain CFSA231 chromosome, complete genome	4834547	642280	752212	4834547	integrase,transposase,tRNA	Escherichia_phage(31.58%)	111	717976:718035	742485:743305
QAX44485.1|642280_642985_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAX44486.1|643331_643631_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAX44487.1|644194_646021_+	OLD family endonuclease	NA	NA	NA	NA	NA
QAX44488.1|646189_646540_-	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	61.4	8.1e-16
QAX44489.1|646687_647119_-	silver-binding protein SilE	NA	NA	NA	NA	NA
QAX44490.1|647363_648845_-	Cu(+)/Ag(+) sensor histidine kinase	NA	W8CYF6	Bacillus_phage	30.1	1.8e-27
QAX44491.1|648837_649518_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.0	2.7e-31
QAX44492.1|649707_651093_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
QAX44493.1|651120_651474_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAX44494.1|651587_652880_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
QAX44495.1|652890_656037_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA	NA
QAX44496.1|656123_656564_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44497.1|656691_659139_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.4	2.9e-83
QAX44498.1|659179_659377_+	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
QAX44499.1|659410_660148_-	peptidase	NA	A8ATH6	Listeria_phage	41.0	1.0e-12
QAX44500.1|660436_660886_-	copper resistance protein	NA	NA	NA	NA	NA
QAX44501.1|661120_662938_+	multicopper oxidase PcoA	NA	NA	NA	NA	NA
QAX44502.1|662937_663834_+	copper resistance protein B	NA	NA	NA	NA	NA
QAX44503.1|663873_664254_+	copper resistance system chaperone PcoC	NA	NA	NA	NA	NA
QAX44504.1|664258_665188_+	copper resistance protein D	NA	NA	NA	NA	NA
QAX44505.1|665242_665923_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
QAX44506.1|665919_667320_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.6	3.2e-18
QAX44507.1|667537_667972_+	copper-binding protein	NA	NA	NA	NA	NA
QAX44508.1|668350_669169_+	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
QAX44509.1|669165_670371_+	ATP/GTP-binding protein	NA	NA	NA	NA	NA
QAX44510.1|670434_670638_-	hypothetical protein	NA	NA	NA	NA	NA
QAX44511.1|670650_671970_-	DUF1173 family protein	NA	NA	NA	NA	NA
QAX44512.1|672220_673648_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	52.3	3.4e-100
QAX44513.1|673862_674378_+	thermonuclease family protein	NA	A0A1X6WF84	Pacmanvirus	38.6	2.1e-07
QAX44514.1|674380_675277_+	hypothetical protein	NA	NA	NA	NA	NA
QAX48327.1|675498_675732_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44515.1|675777_676032_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44516.1|676069_676357_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44517.1|676393_676624_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44518.1|676960_677422_+	hypothetical protein	NA	A0A2H4IBJ0	Erwinia_phage	37.9	7.7e-14
QAX44519.1|677451_677859_+	hypothetical protein	NA	NA	NA	NA	NA
QAX48328.1|677909_678227_-	hypothetical protein	NA	NA	NA	NA	NA
QAX48329.1|678603_678954_-	hypothetical protein	NA	NA	NA	NA	NA
QAX48330.1|680818_681211_+	cysteine hydrolase	NA	NA	NA	NA	NA
QAX44520.1|681348_682233_+	EamA family transporter	NA	NA	NA	NA	NA
QAX44521.1|682264_683464_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
QAX44522.1|683542_684220_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QAX44523.1|684251_684494_-	relaxase	NA	NA	NA	NA	NA
QAX44524.1|686131_686836_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX44525.1|686781_687342_-	hypothetical protein	NA	NA	NA	NA	NA
QAX44526.1|687724_688381_-	quinolone resistance pentapeptide repeat protein QnrS2	NA	NA	NA	NA	NA
QAX44527.1|688937_689642_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX44528.1|689933_690281_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QAX44529.1|690503_690956_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA	NA
QAX44530.1|691040_691673_-	type B-3 chloramphenicol O-acetyltransferase CatB3	NA	A0A2R8FE91	Brazilian_cedratvirus	41.2	4.1e-26
QAX48331.1|691810_692641_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
QAX48332.1|692771_693326_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
QAX44531.1|693469_694174_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX44532.1|694287_695064_+	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA	NA
QAX44533.1|695084_695306_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44534.1|695292_696318_+	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA	NA
QAX44535.1|696739_697492_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	38.7	2.4e-33
QAX44536.1|699302_699788_+	phenol hydroxylase	NA	NA	NA	NA	NA
QAX44537.1|699984_701075_-|transposase	IS4 family transposase ISAba1	transposase	NA	NA	NA	NA
QAX44538.1|701164_701980_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
QAX44539.1|702066_702369_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
QAX44540.1|702262_702514_-	hypothetical protein	NA	NA	NA	NA	NA
QAX44541.1|702544_704038_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAX44542.1|704149_704455_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAX44543.1|704482_705697_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	1.2e-18
QAX44544.1|705913_706798_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
QAX44545.1|707722_708427_+|transposase	IS6 family transposase IS1006	transposase	A0A077SL39	Escherichia_phage	85.8	1.9e-120
QAX48333.1|708511_708913_-	hypothetical protein	NA	NA	NA	NA	NA
QAX44546.1|708921_711873_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.5	0.0e+00
QAX48334.1|711875_712037_-	hypothetical protein	NA	NA	NA	NA	NA
QAX44547.1|712013_712718_+|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAX44548.1|712819_713299_+	transcriptional regulator	NA	NA	NA	NA	NA
QAX44549.1|713368_716521_-	multidrug efflux RND transporter permease subunit OqxB	NA	NA	NA	NA	NA
QAX44550.1|716544_717720_-	multidrug efflux RND transporter periplasmic adaptor subunit OqxA	NA	NA	NA	NA	NA
717976:718035	attL	TGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCT	NA	NA	NA	NA
QAX44551.1|718039_718744_+|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAX44552.1|719078_719471_+	NimC/NimA family protein	NA	NA	NA	NA	NA
QAX44553.1|719790_720177_-	bleomycin binding protein	NA	NA	NA	NA	NA
QAX44554.1|720215_720425_+	hypothetical protein	NA	Q1MVP5	Enterobacteria_phage	89.5	8.9e-10
QAX44555.1|722464_722629_-	cupin domain-containing protein	NA	NA	NA	NA	NA
QAX44556.1|722809_723649_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA	NA
QAX44557.1|723578_723758_-	hypothetical protein	NA	NA	NA	NA	NA
QAX44558.1|723776_723980_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44559.1|724204_724909_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX44560.1|725555_725846_-	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
QAX44561.1|725957_726455_-	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
QAX44562.1|726859_727564_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX44563.1|727753_728569_-	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
QAX44564.1|728719_729424_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX44565.1|729631_729817_+	hypothetical protein	NA	NA	NA	NA	NA
QAX44566.1|730671_731463_-	sulfonamide-resistant dihydropteroate synthase Sul3	NA	NA	NA	NA	NA
QAX44567.1|731931_732177_-	hypothetical protein	NA	NA	NA	NA	NA
QAX44568.1|732214_733078_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
QAX44569.1|733308_734013_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX44570.1|734059_734401_-	quaternary ammonium compound efflux SMR transporter QacL	NA	E5E3Y9	Acinetobacter_phage	35.3	1.2e-08
QAX44571.1|734570_735362_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
QAX44572.1|735454_736714_-	chloramphenicol efflux MFS transporter CmlA1	NA	S4TR35	Salmonella_phage	31.7	4.8e-26
QAX44573.1|736975_737767_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
QAX44574.1|737824_738433_-	HAD family hydrolase	NA	NA	NA	NA	NA
QAX48335.1|738528_739371_-	alpha/beta fold putative hydrolase EstX	NA	W8EKH7	Mycobacterium_phage	26.1	3.0e-08
QAX44575.1|739537_740551_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QAX44576.1|740489_741104_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
QAX44577.1|741229_741742_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	84.8	4.5e-39
QAX44578.1|741775_742480_-|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAX44579.1|742655_744224_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-12
742485:743305	attR	AGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCATATTACTTACTAATAATGTTCCGAAATAAAAAGCGATCAATATCATAAAGTTAGTAACATTATTGCCGATAAATCTTCCTGTATGAGGATATGCAATCCCAGGGAGAAAATATGTTTTTGCATAACATTAAAATACGTTCAAAATTATTTATGGCCTTTGGCTTATTCATTGTTCTCATGGTGGTGAGTTCCGCTCTGTCTTTGTTTAGCCTTGATCGGGCTAATACGGGTATGCAGGACATTATTACCAATGATTATCCCACCACGGTAAAAGCCAATCTGTTAATCGATAATTTTAATGATTTCATCATCGCGCAGCAGCTCATGTTACTGGATGAAGAGGGGCGCTGGAGCCAGAGCTCGCAGAAAGAACTCAGTGAGATAAGCCAGCGCATTTCGGCGCTACTGGATGAGCTTTCCAGGGAAAATAGTCACGATGCGGATTCACAGAAAATCATTAATGAGATCCGTGAAGCGCGCCAGCAATACCTGGAGTCCAGATTCCGTATTTTGAAAGATATTCAAAGCAATAATCGTCAGGCGGCCATTCAGGAGATGATGACCAGAACGGTGCAGGTGCAAAAAGTCTATAAGGACAAAGTCCAGGAACTTATCGCTGTTCAGGACGCGCAGATGCATGAAGCGAGCGTGCAGGTCAAAGAGGATTTTAAAAATAATCGGACGCTGTTAATTACCCTGGCGCTGATAAGCATCGCCGCCGGAGGCGTAATGGGATGGTATATTGTGCGTTCTATTACCCG	NA	NA	NA	NA
QAX44580.1|744220_744868_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAX44581.1|745099_745867_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QAX44582.1|746147_746654_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QAX48336.1|746777_748625_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
QAX44583.1|748774_750520_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QAX44584.1|750755_750971_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QAX44585.1|751198_752212_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.2e-109
>prophage 2
CP033350	Salmonella enterica subsp. enterica strain CFSA231 chromosome, complete genome	4834547	1748870	1758041	4834547	tRNA	Enterobacteria_phage(71.43%)	10	NA	NA
QAX45479.1|1748870_1749818_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
QAX45480.1|1749801_1750533_+	ABC transporter permease	NA	NA	NA	NA	NA
QAX45481.1|1750513_1750621_-	protein YohO	NA	NA	NA	NA	NA
QAX45482.1|1750680_1751412_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAX45483.1|1751634_1753320_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	1.8e-278
QAX45484.1|1753316_1754036_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAX45485.1|1754082_1754550_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAX45486.1|1754606_1755137_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	32.4	7.2e-16
QAX45487.1|1755308_1755767_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAX45488.1|1756007_1758041_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
CP033350	Salmonella enterica subsp. enterica strain CFSA231 chromosome, complete genome	4834547	1837713	1848220	4834547		Enterobacteria_phage(37.5%)	10	NA	NA
QAX45557.1|1837713_1839117_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
QAX45558.1|1839294_1840188_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAX45559.1|1840564_1841650_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	4.7e-102
QAX45560.1|1841649_1842549_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
QAX45561.1|1842596_1843475_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
QAX45562.1|1843475_1844027_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
QAX45563.1|1844032_1845007_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAX45564.1|1845022_1845796_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAX45565.1|1845800_1846880_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
QAX45566.1|1846906_1848220_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 4
CP033350	Salmonella enterica subsp. enterica strain CFSA231 chromosome, complete genome	4834547	3613219	3654580	4834547	capsid,protease,plate,head,terminase,tail,holin,portal,integrase	Shigella_phage(65.45%)	58	3611705:3611751	3650688:3650734
3611705:3611751	attL	ATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
QAX47227.1|3613219_3613783_-	recombinase family protein	NA	K7PJT4	Enterobacteria_phage	79.1	3.4e-80
QAX47228.1|3614307_3615030_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
QAX47229.1|3615226_3615634_-|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	1.8e-59
QAX47230.1|3615640_3616723_-|tail	phage tail protein	tail	U5P0I1	Shigella_phage	96.2	1.9e-50
QAX47231.1|3616726_3617311_-	DUF2313 domain-containing protein	NA	O22003	Shigella_phage	100.0	1.1e-113
QAX47232.1|3617301_3618360_-|plate	baseplate J/gp47 family protein	plate	Q8SBG4	Shigella_phage	98.6	5.2e-199
QAX47233.1|3618346_3618775_-|tail	phage tail protein	tail	U5P0R9	Shigella_phage	100.0	2.3e-81
QAX47234.1|3618771_3619320_-|plate	phage baseplate assembly protein V	plate	U5P081	Shigella_phage	97.8	1.9e-96
QAX47235.1|3619319_3620399_-|plate	baseplate protein	plate	Q8SBG7	Shigella_phage	99.7	5.3e-207
QAX47236.1|3620395_3621724_-	DNA circularization protein	NA	Q8SBG8	Shigella_phage	99.3	8.4e-247
QAX47237.1|3621814_3622327_-	hypothetical protein	NA	NA	NA	NA	NA
QAX47238.1|3622408_3624241_-|tail	phage tail tape measure protein	tail	S5FM63	Shigella_phage	99.2	4.7e-304
QAX47239.1|3624233_3624416_-	hypothetical protein	NA	NA	NA	NA	NA
QAX47240.1|3624382_3624652_-|tail	phage tail assembly protein	tail	S5FNR3	Shigella_phage	100.0	3.5e-43
QAX47241.1|3624651_3625008_-|tail	phage tail protein	tail	U5P076	Shigella_phage	100.0	5.3e-63
QAX47242.1|3625007_3626504_-|tail	phage tail protein	tail	M1FN90	Enterobacteria_phage	99.0	7.7e-273
QAX47243.1|3626487_3626658_-	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	100.0	9.3e-26
QAX47244.1|3626666_3627227_-	hypothetical protein	NA	M1FQV7	Enterobacteria_phage	99.5	2.3e-105
QAX47245.1|3627223_3627730_-	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	99.4	5.0e-91
QAX47246.1|3627704_3628115_-|head,tail	head-tail adaptor protein	head,tail	M1FJ87	Enterobacteria_phage	97.8	5.9e-74
QAX47247.1|3628111_3628435_-|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	99.1	1.1e-56
QAX47248.1|3628409_3628637_-	hypothetical protein	NA	S5FNU1	Shigella_phage	94.9	2.2e-22
QAX47249.1|3628686_3629892_-|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	100.0	1.8e-224
QAX47250.1|3629906_3630602_-|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	98.7	6.2e-124
QAX47251.1|3630543_3631785_-|portal	phage portal protein	portal	U5P411	Shigella_phage	99.5	5.0e-241
QAX47252.1|3631784_3631967_-	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
QAX47253.1|3631978_3633712_-|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	100.0	0.0e+00
QAX47254.1|3633725_3634220_-|terminase	phage terminase small subunit P27 family	terminase	Q8SBI1	Shigella_phage	99.4	1.6e-86
QAX47255.1|3634336_3634687_-	HNH endonuclease	NA	Q8SBD7	Shigella_phage	99.1	3.6e-64
QAX47256.1|3634713_3634986_-	peptidase	NA	Q8SBD8	Shigella_phage	98.9	6.3e-40
QAX47257.1|3634870_3635263_-	DUF2570 domain-containing protein	NA	Q8SBD9	Shigella_phage	89.2	3.1e-56
QAX47258.1|3635246_3635723_-	lysozyme	NA	S5FV07	Shigella_phage	97.5	2.4e-87
QAX47259.1|3635726_3636062_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	100.0	5.2e-60
QAX47260.1|3636138_3637191_-	site-specific DNA-methyltransferase	NA	Q8SBE2	Shigella_phage	98.9	9.8e-206
QAX47261.1|3637340_3637655_-	hypothetical protein	NA	S5MQK8	Escherichia_phage	90.7	1.5e-29
QAX47262.1|3637784_3638537_-	antitermination protein	NA	Q8SBE4	Shigella_phage	100.0	2.8e-138
QAX47263.1|3638550_3639540_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.4	9.5e-195
QAX47264.1|3639547_3640357_-	KilA-N domain-containing protein	NA	A5LH75	Enterobacteria_phage	99.6	1.8e-151
QAX47265.1|3640376_3640766_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0ZD39	Stx2-converting_phage	99.2	1.6e-68
QAX47266.1|3640762_3641089_-	LexA family transcriptional regulator	NA	A0A0N7KZF7	Stx2-converting_phage	98.1	4.5e-53
QAX47267.1|3641085_3641739_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	99.1	9.6e-127
QAX47268.1|3641738_3642233_-	PerC family transcriptional regulator	NA	K7PJR0	Enterobacteria_phage	98.8	3.3e-87
QAX47269.1|3642229_3643048_-	helix-turn-helix domain-containing protein	NA	Q8SBF1	Shigella_phage	100.0	1.8e-122
QAX48449.1|3643044_3643269_-	hypothetical protein	NA	A0A291AX25	Escherichia_phage	95.9	5.9e-36
QAX47270.1|3643273_3644110_-	ash family protein	NA	A0A291AWU3	Escherichia_phage	99.6	2.2e-152
QAX47271.1|3644106_3644658_-	hypothetical protein	NA	Q8SBF4	Shigella_phage	100.0	7.6e-101
QAX47272.1|3644701_3644902_-	transcriptional regulator	NA	U5P445	Shigella_phage	100.0	7.9e-32
QAX47273.1|3644992_3645667_+	LexA family transcriptional repressor	NA	Q8SBF6	Shigella_phage	100.0	1.2e-132
QAX47274.1|3646079_3646271_-	hypothetical protein	NA	S5FM78	Shigella_phage	100.0	3.3e-27
QAX47275.1|3646508_3647072_+	hypothetical protein	NA	U5P4J6	Shigella_phage	97.9	2.3e-100
QAX47276.1|3647137_3647962_+	DUF2303 family protein	NA	U5P439	Shigella_phage	99.6	1.7e-149
QAX47277.1|3648089_3648626_+	HD family hydrolase	NA	U5P0T3	Shigella_phage	100.0	4.3e-101
QAX47278.1|3648616_3648979_+	hypothetical protein	NA	U5P092	Shigella_phage	100.0	2.1e-67
QAX47279.1|3648978_3649284_+	hypothetical protein	NA	U5P0J0	Shigella_phage	100.0	6.8e-51
QAX47280.1|3649510_3650674_+|integrase	integrase	integrase	U5P434	Shigella_phage	100.0	2.4e-229
QAX47281.1|3650879_3652130_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	48.2	7.3e-99
3650688:3650734	attR	ATGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
QAX47282.1|3652141_3653245_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
QAX47283.1|3653527_3654580_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	1.5e-113
>prophage 5
CP033350	Salmonella enterica subsp. enterica strain CFSA231 chromosome, complete genome	4834547	4433902	4480992	4834547	plate,tRNA,tail	Burkholderia_phage(36.36%)	50	NA	NA
QAX47956.1|4433902_4434901_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAX47957.1|4434988_4436299_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAX47958.1|4436545_4437061_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAX47959.1|4437160_4437370_-	CsbD family protein	NA	NA	NA	NA	NA
QAX48479.1|4437391_4437505_-	hypothetical protein	NA	NA	NA	NA	NA
QAX47960.1|4437501_4438827_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
QAX47961.1|4439005_4439614_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAX47962.1|4439722_4440091_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAX47963.1|4440261_4442682_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAX47964.1|4442780_4443653_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAX47965.1|4443666_4444164_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAX47966.1|4444344_4445262_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAX47967.1|4445425_4446784_-	maltoporin	NA	NA	NA	NA	NA
QAX47968.1|4446872_4447982_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAX47969.1|4448343_4449534_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAX47970.1|4449665_4451210_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAX47971.1|4451224_4452115_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAX47972.1|4452280_4452691_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAX47973.1|4452833_4454930_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAX47974.1|4454929_4455667_-	hypothetical protein	NA	NA	NA	NA	NA
QAX47975.1|4455663_4456302_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAX47976.1|4456365_4456608_-	outer membrane protein	NA	NA	NA	NA	NA
QAX47977.1|4457051_4458701_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAX47978.1|4459089_4460439_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAX47979.1|4460569_4460917_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAX47980.1|4461493_4461781_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
QAX47981.1|4461783_4462389_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	1.9e-60
QAX47982.1|4462401_4462716_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAX47983.1|4462875_4463331_+	hypothetical protein	NA	NA	NA	NA	NA
QAX47984.1|4463327_4463525_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAX47985.1|4463514_4464942_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.2	1.4e-194
QAX47986.1|4464941_4465466_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAX47987.1|4465517_4465835_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAX47988.1|4465794_4465923_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAX47989.1|4466019_4468374_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.5	1.7e-64
QAX47990.1|4468373_4469327_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAX48480.1|4469326_4469536_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAX47991.1|4469523_4470567_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	3.8e-77
QAX47992.1|4470576_4471299_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
QAX47993.1|4471307_4471550_+	hypothetical protein	NA	NA	NA	NA	NA
QAX47994.1|4471625_4471988_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
QAX47995.1|4471984_4472914_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	84.4	6.1e-151
QAX47996.1|4472913_4474461_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	4.2e-48
QAX47997.1|4474624_4474984_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAX47998.1|4474974_4476090_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	3.1e-101
QAX47999.1|4476082_4476715_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	55.6	5.6e-23
QAX48000.1|4476717_4478463_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	4.2e-52
QAX48001.1|4478467_4479073_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
QAX48002.1|4479069_4479525_+	hypothetical protein	NA	NA	NA	NA	NA
QAX48003.1|4480263_4480992_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
