assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004124155.1_ASM412415v1	CP033348	Salmonella enterica subsp. enterica strain CFSA1096 chromosome, complete genome	1	627520-627761	1,1	PILER-CR,CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	TTTTACAGGGCGACAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA,GGGTTTTTGCTTTTACAGGGCGGCAGGATGAATGACTGTCCACGACGCTATA	53,52	0	0	NA	NA	NA:NA	2,1	2	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA,NA|55aa|down_8|CP033348.1_640006_640171_-	NA|269aa|up_9|CP033348.1_615739_616546_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|476aa|up_8|CP033348.1_616532_617960_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|305aa|up_7|CP033348.1_617986_618901_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|285aa|up_6|CP033348.1_618911_619766_-	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|278aa|up_5|CP033348.1_620099_620933_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|316aa|up_4|CP033348.1_620943_621891_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|524aa|up_3|CP033348.1_622130_623702_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|CP033348.1_624231_625002_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|CP033348.1_625027_625918_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|CP033348.1_626015_627161_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|CP033348.1_628496_629435_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|CP033348.1_629532_630522_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|CP033348.1_630542_631874_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|CP033348.1_631940_633149_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|CP033348.1_633182_635477_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|CP033348.1_635546_636911_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|CP033348.1_637226_638558_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|CP033348.1_638583_639894_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|CP033348.1_640006_640171_-	NA	NA|234aa|down_9|CP033348.1_640194_640896_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCA_004124155.1_ASM412415v1	CP033348	Salmonella enterica subsp. enterica strain CFSA1096 chromosome, complete genome	2	952391-953273	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	13,14,14	14	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA,NA|57aa|down_2|CP033348.1_954546_954717_+,NA|73aa|down_5|CP033348.1_958509_958728_-	NA|381aa|up_9|CP033348.1_938188_939331_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP033348.1_939374_942131_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP033348.1_942188_943484_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP033348.1_943535_945770_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP033348.1_945853_946210_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP033348.1_946175_946472_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP033348.1_947240_948041_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP033348.1_948268_949906_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP033348.1_949988_951287_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP033348.1_951422_952094_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP033348.1_953370_954168_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP033348.1_954255_954618_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP033348.1_954546_954717_+	NA	NA|600aa|down_3|CP033348.1_955041_956841_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP033348.1_956840_958553_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|73aa|down_5|CP033348.1_958509_958728_-	NA	NA|245aa|down_6|CP033348.1_958654_959389_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_7|CP033348.1_959601_960555_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|349aa|down_8|CP033348.1_963821_964868_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_9|CP033348.1_965118_966027_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD
GCA_004124155.1_ASM412415v1	CP033348	Salmonella enterica subsp. enterica strain CFSA1096 chromosome, complete genome	3	962680-963807	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	27,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,18	18	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,RT	NA|57aa|up_5|CP033348.1_954546_954717_+,NA|73aa|up_2|CP033348.1_958509_958728_-,NA	NA|433aa|up_9|CP033348.1_949988_951287_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_8|CP033348.1_951422_952094_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_7|CP033348.1_953370_954168_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_6|CP033348.1_954255_954618_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|up_5|CP033348.1_954546_954717_+	NA	NA|600aa|up_4|CP033348.1_955041_956841_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|CP033348.1_956840_958553_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|73aa|up_2|CP033348.1_958509_958728_-	NA	NA|245aa|up_1|CP033348.1_958654_959389_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_0|CP033348.1_959601_960555_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|349aa|down_0|CP033348.1_963821_964868_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP033348.1_965118_966027_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP033348.1_966036_967476_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP033348.1_967462_968068_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP033348.1_968085_968442_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP033348.1_968632_968944_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP033348.1_968962_969673_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP033348.1_969672_970152_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP033348.1_970148_971198_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP033348.1_971178_971940_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
