The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	664865	709987	4957714	capsid,terminase,tail,head,integrase,portal,tRNA,holin	Cronobacter_phage(65.79%)	52	665016:665031	697865:697880
QAX59211.1|664865_666431_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.9	1.0e-12
665016:665031	attL	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX59212.1|666427_667075_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAX59213.1|667306_668074_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QAX59214.1|668331_670113_-	ATP-binding protein	NA	X2KLG0	Campylobacter_phage	23.2	6.4e-08
QAX59215.1|670102_671140_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	63.9	1.5e-121
QAX59216.1|671143_671710_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	32.8	1.3e-18
QAX59217.1|671726_672308_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	37.2	1.2e-27
QAX59218.1|672451_672673_+	regulator	NA	NA	NA	NA	NA
QAX59219.1|672703_673207_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QAX59220.1|673216_673444_+	hypothetical protein	NA	NA	NA	NA	NA
QAX59221.1|673433_673859_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QAX59222.1|673858_674260_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
QAX59223.1|674327_674561_+	DUF2732 family protein	NA	NA	NA	NA	NA
QAX59224.1|674551_675412_+	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	1.1e-130
QAX59225.1|675408_677430_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.5	7.9e-297
QAX59226.1|677549_677756_+	hypothetical protein	NA	NA	NA	NA	NA
QAX59227.1|677729_678053_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QAX59228.1|678049_679111_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.8	6.7e-162
QAX59229.1|679107_680883_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
QAX59230.1|681043_681847_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
QAX59231.1|681908_682931_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
QAX59232.1|682934_683636_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
QAX59233.1|683681_684185_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QAX59234.1|684181_684688_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
QAX59235.1|684684_685392_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	1.3e-100
QAX59236.1|685388_686516_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QAX59237.1|686512_686968_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QAX59238.1|686977_687271_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QAX59239.1|687267_687609_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAX59240.1|687608_687941_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	1.5e-35
QAX59241.1|687912_688101_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	77.4	1.5e-21
QAX59242.1|688087_688345_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QAX59243.1|688532_690503_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.8	3.2e-274
QAX59244.1|690499_690829_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QAX59245.1|691995_692589_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
QAX59246.1|692598_694833_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	7.2e-182
QAX59247.1|694845_695400_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	2.7e-90
QAX59248.1|695389_696115_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	53.5	3.7e-63
QAX59249.1|696086_696632_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
QAX59250.1|696631_698335_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	9.9e-224
697865:697880	attR	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX59251.1|699086_699272_+	hypothetical protein	NA	NA	NA	NA	NA
QAX59252.1|699241_700006_+	reverse transcriptase	NA	NA	NA	NA	NA
QAX59253.1|700329_700836_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QAX63212.1|700959_702807_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
QAX59254.1|702956_704702_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QAX59255.1|704937_705153_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QAX59256.1|705380_706394_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
QAX63213.1|706297_706567_-	hypothetical protein	NA	NA	NA	NA	NA
QAX59257.1|706644_707256_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
QAX59258.1|707362_707722_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
QAX59259.1|707819_708641_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
QAX59260.1|708745_709987_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.7	5.5e-91
>prophage 2
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	1264429	1339821	4957714	lysis,capsid,terminase,tail,protease,head,integrase,portal,tRNA,transposase,holin	Salmonella_phage(43.33%)	94	1256510:1256526	1345668:1345684
1256510:1256526	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QAX59762.1|1264429_1265467_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAX59763.1|1265582_1266272_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAX59764.1|1266590_1266974_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAX59765.1|1267035_1267623_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAX63238.1|1267725_1268625_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAX59766.1|1268642_1269977_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAX59767.1|1270107_1270845_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
QAX59768.1|1270829_1272452_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAX59769.1|1272536_1272716_+	hypothetical protein	NA	NA	NA	NA	NA
QAX59770.1|1272715_1272880_+	rpoE leader peptide RseD	NA	NA	NA	NA	NA
QAX59771.1|1272876_1273452_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAX59772.1|1273483_1274134_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAX59773.1|1274133_1275090_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAX59774.1|1275086_1275566_+	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
QAX59775.1|1275595_1275712_+	transcriptional regulator	NA	NA	NA	NA	NA
QAX59776.1|1276063_1277293_+	DUF4102 domain-containing protein	NA	H6WRW7	Salmonella_phage	94.4	2.9e-233
QAX59777.1|1277270_1277555_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAX59778.1|1277595_1277835_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX59779.1|1277877_1279035_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAX59780.1|1278997_1281925_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
QAX59781.1|1282051_1282402_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAX59782.1|1282423_1282582_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAX59783.1|1282980_1283385_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	1.6e-71
QAX59784.1|1283514_1283751_+	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
QAX59785.1|1283716_1284091_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAX59786.1|1284175_1285159_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAX59787.1|1285161_1285911_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAX59788.1|1285921_1286269_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
QAX59789.1|1286265_1286790_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
QAX59790.1|1286789_1287263_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
QAX59791.1|1287654_1287936_+	hypothetical protein	NA	A0A0K2FIU9	Enterobacteria_phage	92.5	1.4e-47
QAX59792.1|1288127_1288367_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	1.1e-37
QAX59793.1|1288356_1288662_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
QAX59794.1|1288701_1289304_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	1.1e-108
QAX59795.1|1289303_1289510_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAX59796.1|1289512_1290124_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
QAX59797.1|1290120_1290261_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX59798.1|1290257_1290935_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAX59799.1|1290931_1291117_+	hypothetical protein	NA	NA	NA	NA	NA
QAX59800.1|1291207_1291771_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAX59801.1|1292277_1292466_+	hypothetical protein	NA	NA	NA	NA	NA
QAX59802.1|1292680_1293367_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAX63239.1|1293642_1293972_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAX59803.1|1293955_1294408_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.0e-79
QAX63240.1|1294425_1294878_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAX59804.1|1295113_1295515_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAX59805.1|1295801_1296347_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAX59806.1|1296318_1298250_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAX59807.1|1298233_1298437_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAX59808.1|1298433_1300014_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAX59809.1|1300003_1301500_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAX59810.1|1301512_1301860_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAX59811.1|1301914_1302943_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAX59812.1|1303000_1303360_+	DNA packaging protein	NA	NA	NA	NA	NA
QAX59813.1|1303370_1303754_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAX59814.1|1303781_1304360_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAX63241.1|1304408_1305539_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
QAX59815.1|1305647_1306049_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAX59816.1|1306056_1306803_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.5	1.9e-99
QAX59817.1|1306853_1307249_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAX59818.1|1307245_1307584_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAX59819.1|1307555_1310651_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	1.7e-274
QAX59820.1|1310653_1310983_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAX59821.1|1310992_1311691_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAX59822.1|1311697_1312435_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAX59823.1|1312332_1312980_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAX59824.1|1313041_1316404_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAX59825.1|1316442_1316685_+	hypothetical protein	NA	NA	NA	NA	NA
QAX59826.1|1316738_1319111_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAX59827.1|1319107_1319932_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAX59828.1|1319921_1320500_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAX59829.1|1320596_1320824_-	phage virulence factor	NA	NA	NA	NA	NA
QAX59830.1|1320930_1321143_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAX63242.1|1321205_1321271_+	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
QAX59831.1|1321850_1322015_+|integrase	integrase	integrase	NA	NA	NA	NA
QAX59832.1|1321935_1322481_-|transposase	transposase	transposase	NA	NA	NA	NA
QAX59833.1|1322727_1322865_-	hypothetical protein	NA	NA	NA	NA	NA
QAX59834.1|1323343_1324837_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAX59835.1|1325241_1327041_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAX59836.1|1327057_1328032_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QAX63243.1|1328305_1328986_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAX59837.1|1328982_1329888_+	GTPase Era	NA	NA	NA	NA	NA
QAX59838.1|1329899_1330628_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAX59839.1|1330639_1331371_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAX59840.1|1331370_1331751_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAX59841.1|1331862_1332123_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
QAX59842.1|1332160_1333087_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
QAX59843.1|1333202_1334399_+	MFS transporter	NA	NA	NA	NA	NA
QAX59844.1|1334420_1335338_+	oxidoreductase	NA	NA	NA	NA	NA
QAX59845.1|1335376_1336225_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAX59846.1|1336340_1337234_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QAX59847.1|1337244_1338606_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAX59848.1|1338609_1339245_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAX59849.1|1339269_1339821_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1345668:1345684	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 3
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	1712051	1721290	4957714	holin,tail	Salmonella_phage(37.5%)	8	NA	NA
QAX60179.1|1712051_1714418_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
QAX63255.1|1714746_1715736_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
QAX60180.1|1715750_1716119_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
QAX60181.1|1716147_1717479_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
QAX60182.1|1717775_1718105_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
QAX60183.1|1718697_1719939_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
QAX60184.1|1719941_1720469_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
QAX60185.1|1720846_1721290_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
>prophage 4
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	1796393	1805564	4957714	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAX60256.1|1796393_1797341_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
QAX60257.1|1797324_1798056_+	ABC transporter permease	NA	NA	NA	NA	NA
QAX60258.1|1798036_1798144_-	protein YohO	NA	NA	NA	NA	NA
QAX60259.1|1798203_1798935_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAX60260.1|1799157_1800843_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
QAX60261.1|1800839_1801559_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAX60262.1|1801605_1802073_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAX60263.1|1802129_1802660_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
QAX60264.1|1802831_1803290_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAX60265.1|1803530_1805564_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 5
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	1873872	1884378	4957714		Enterobacteria_phage(37.5%)	10	NA	NA
QAX60321.1|1873872_1875276_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
QAX60322.1|1875453_1876347_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAX60323.1|1876723_1877809_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAX60324.1|1877808_1878708_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
QAX63259.1|1878755_1879634_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
QAX60325.1|1879634_1880186_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
QAX60326.1|1880191_1881184_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAX60327.1|1881180_1881954_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAX60328.1|1881958_1883038_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
QAX60329.1|1883064_1884378_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 6
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	1970372	2021059	4957714	capsid,terminase,plate,tail,protease,head,integrase,portal,holin	Salmonella_phage(80.0%)	72	1964950:1964964	1981080:1981094
1964950:1964964	attL	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAX60413.1|1970372_1970846_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
QAX60414.1|1971493_1971784_-	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
QAX60415.1|1972155_1972953_-	protein MtfA	NA	NA	NA	NA	NA
QAX60416.1|1973244_1974234_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
QAX60417.1|1974235_1974478_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
QAX60418.1|1974502_1975072_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
QAX60419.1|1975075_1975657_-	molecular chaperone DnaJ	NA	A0A192Y6F5	Salmonella_phage	100.0	4.7e-109
QAX60420.1|1975667_1975925_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
QAX60421.1|1975926_1976460_-	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	100.0	2.5e-101
QAX60422.1|1976530_1977070_-	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
QAX60423.1|1977206_1978034_-	DUF2303 family protein	NA	A0A192Y6E5	Salmonella_phage	100.0	2.6e-153
QAX60424.1|1978091_1978463_-	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	100.0	2.5e-63
QAX60425.1|1978810_1979227_+	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	100.0	6.4e-76
QAX60426.1|1979189_1979528_-	hypothetical protein	NA	A0A1C9IHZ4	Salmonella_phage	100.0	7.0e-57
QAX60427.1|1979733_1980429_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
QAX60428.1|1980402_1980588_+	amino acid permease	NA	NA	NA	NA	NA
QAX60429.1|1980526_1980751_+	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
QAX60430.1|1980779_1981334_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
1981080:1981094	attR	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAX60431.1|1981330_1982473_+	peptidase	NA	A0A1C9IHV9	Salmonella_phage	100.0	1.5e-212
QAX60432.1|1982469_1982694_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QAX60433.1|1982690_1983665_+	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	100.0	2.3e-169
QAX60434.1|1983661_1984135_+	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	100.0	4.9e-56
QAX60435.1|1984131_1985007_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	99.3	2.7e-169
QAX60436.1|1985015_1985405_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	100.0	4.9e-70
QAX60437.1|1985376_1986282_+	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	100.0	1.1e-162
QAX63264.1|1986289_1987279_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	100.0	2.1e-194
QAX60438.1|1987292_1988045_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	100.0	1.8e-145
QAX63265.1|1988195_1988453_+	hypothetical protein	NA	A0A1C9IHX4	Salmonella_phage	100.0	3.1e-41
QAX60439.1|1988598_1988985_+	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	100.0	7.0e-61
QAX60440.1|1988971_1989253_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	9.7e-20
QAX60441.1|1989252_1989867_+	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	100.0	5.7e-113
QAX60442.1|1989863_1990256_+	DUF2570 domain-containing protein	NA	A0A192Y6H8	Salmonella_phage	100.0	2.8e-65
QAX63266.1|1990718_1991051_+	hypothetical protein	NA	A0A192Y5Y1	Salmonella_phage	100.0	2.8e-58
QAX60443.1|1991101_1991452_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	94.8	9.8e-62
QAX60444.1|1991568_1992072_+|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	3.6e-89
QAX60445.1|1992068_1993802_+|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	99.5	0.0e+00
QAX60446.1|1993813_1993996_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
QAX60447.1|1993995_1995237_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.8	2.0e-242
QAX60448.1|1995178_1995865_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	97.4	2.0e-122
QAX60449.1|1995879_1997085_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	98.0	9.4e-221
QAX60450.1|1997134_1997335_+	hypothetical protein	NA	S5FNU1	Shigella_phage	98.5	5.8e-27
QAX60451.1|1997337_1997661_+|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	97.2	2.4e-54
QAX60452.1|1997657_1998062_+|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	74.6	3.7e-52
QAX60453.1|1998033_1998546_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	87.6	1.6e-81
QAX60454.1|1998542_1999100_+	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	93.4	1.1e-96
QAX60455.1|1999121_1999286_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	94.4	7.1e-23
QAX60456.1|1999275_2000772_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.4	3.0e-277
QAX60457.1|2000771_2001128_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	99.2	1.3e-61
QAX60458.1|2001124_2001451_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
QAX60459.1|2001535_2003461_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	97.3	0.0e+00
QAX60460.1|2003477_2003927_+	hypothetical protein	NA	NA	NA	NA	NA
QAX60461.1|2003986_2005327_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.3	9.7e-251
QAX60462.1|2005323_2006382_+|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	99.7	3.0e-202
QAX60463.1|2006381_2006915_+|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
QAX60464.1|2006919_2007333_+	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	99.3	1.2e-74
QAX60465.1|2007325_2008405_+|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	99.2	7.2e-204
QAX60466.1|2008407_2008995_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
QAX60467.1|2008981_2010544_+|tail	phage tail protein	tail	A0A192Y7M1	Salmonella_phage	98.5	1.7e-283
QAX60468.1|2010513_2011119_+|tail	tail fiber assembly protein	tail	A0A192Y8L2	Salmonella_phage	100.0	2.7e-107
QAX60469.1|2011232_2011466_-	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	100.0	1.2e-36
QAX60470.1|2011701_2012115_-	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	100.0	2.9e-73
QAX60471.1|2012111_2012324_-	hypothetical protein	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
QAX60472.1|2013297_2013540_+	hypothetical protein	NA	NA	NA	NA	NA
QAX60473.1|2013517_2013679_+	hypothetical protein	NA	NA	NA	NA	NA
QAX60474.1|2013805_2014225_+	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAX60475.1|2014227_2015496_+	protein UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
QAX60476.1|2015950_2016163_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAX63267.1|2016173_2016362_+	cold-shock protein	NA	NA	NA	NA	NA
QAX60477.1|2016622_2017819_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
QAX60478.1|2018468_2018768_+	hypothetical protein	NA	NA	NA	NA	NA
QAX60479.1|2018859_2019555_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
QAX60480.1|2019628_2021059_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 7
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	2125101	2131910	4957714	tail,integrase	Salmonella_phage(33.33%)	12	2127311:2127333	2137026:2137048
QAX60588.1|2125101_2125332_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
QAX60589.1|2125469_2125844_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
QAX60590.1|2125844_2126720_+	copper resistance D family protein	NA	NA	NA	NA	NA
QAX60591.1|2126736_2127090_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
QAX63273.1|2127147_2127267_+	hypothetical protein	NA	NA	NA	NA	NA
2127311:2127333	attL	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
QAX63272.1|2127463_2128318_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
QAX63274.1|2128377_2128872_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
QAX60592.1|2129061_2129292_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
QAX60593.1|2129345_2129879_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
QAX60594.1|2130135_2130303_-	lytic enzyme	NA	NA	NA	NA	NA
QAX60595.1|2130367_2130556_-	hypothetical protein	NA	NA	NA	NA	NA
QAX60596.1|2131028_2131910_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
2137026:2137048	attR	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
>prophage 8
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	2918988	3009905	4957714	lysis,terminase,tail,protease,tRNA,holin	Salmonella_phage(59.57%)	95	NA	NA
QAX61372.1|2918988_2919669_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
QAX61373.1|2920014_2920224_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61374.1|2920289_2920949_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
QAX61375.1|2921035_2921365_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAX61376.1|2921361_2921643_-	acylphosphatase	NA	NA	NA	NA	NA
QAX61377.1|2921691_2922471_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAX61378.1|2922496_2923045_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAX61379.1|2923259_2924471_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAX61380.1|2924528_2924846_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAX61381.1|2924890_2925307_-	CoA-binding protein	NA	NA	NA	NA	NA
QAX61382.1|2925477_2926140_+	DUF2057 family protein	NA	NA	NA	NA	NA
QAX61383.1|2926234_2926693_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAX61384.1|2926728_2928783_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
QAX61385.1|2928906_2929353_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAX61386.1|2929371_2931525_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAX61387.1|2931511_2932117_-	DNA transformation protein	NA	NA	NA	NA	NA
QAX61388.1|2932333_2932843_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAX61389.1|2933199_2934252_+	outer membrane protein A	NA	NA	NA	NA	NA
QAX61390.1|2934323_2934776_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAX61391.1|2934961_2936722_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAX61392.1|2936790_2937309_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAX61393.1|2937408_2937576_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAX61394.1|2937831_2938395_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
QAX61395.1|2938391_2940032_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
QAX61396.1|2940036_2941290_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
QAX61397.1|2941304_2943212_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
QAX61398.1|2943224_2945333_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAX61399.1|2945431_2946541_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAX61400.1|2946537_2947080_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAX61401.1|2947245_2948256_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAX61402.1|2948463_2951076_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
QAX61403.1|2951502_2951694_+	DinI family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAX61404.1|2951964_2952651_+	virulence protein	NA	NA	NA	NA	NA
QAX61405.1|2952635_2952935_+	hypothetical protein	NA	NA	NA	NA	NA
QAX61406.1|2953003_2953630_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAX61407.1|2954277_2955246_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.4	3.0e-193
QAX61408.1|2955721_2956303_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAX61409.1|2956302_2958741_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.8	7.5e-92
QAX61410.1|2958794_2959037_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61411.1|2959075_2962426_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QAX61412.1|2962497_2963202_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
QAX61413.1|2963099_2963837_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAX61414.1|2963846_2964542_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAX61415.1|2964631_2965165_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAX61416.1|2965281_2965779_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAX61417.1|2965878_2966211_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
QAX61418.1|2967331_2967877_-|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
QAX61419.1|2967890_2968106_-	hypothetical protein	NA	NA	NA	NA	NA
QAX63311.1|2968345_2968792_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	90.4	1.2e-64
QAX61420.1|2968809_2969262_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	7.9e-80
QAX63312.1|2969245_2969575_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.9e-55
QAX61421.1|2969850_2970537_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAX61422.1|2970897_2971347_+	hypothetical protein	NA	NA	NA	NA	NA
QAX61423.1|2971482_2971608_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61424.1|2971802_2972492_-	antiterminator	NA	I6PDF8	Cronobacter_phage	50.6	1.1e-59
QAX61425.1|2972488_2972629_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX61426.1|2972625_2973237_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.0	2.7e-91
QAX61427.1|2973239_2973446_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.0e-34
QAX61428.1|2973445_2974048_-	DUF1367 family protein	NA	A0A0M4QX23	Salmonella_phage	99.0	7.5e-110
QAX61429.1|2974132_2974354_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61430.1|2974463_2974697_-	DNA damage-inducible protein I	NA	A0A0M4REN2	Salmonella_phage	87.0	1.2e-31
QAX61431.1|2975288_2975885_+	hypothetical protein	NA	NA	NA	NA	NA
QAX61432.1|2975896_2976874_+	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
QAX63313.1|2976928_2977186_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61433.1|2977185_2977830_-	hypothetical protein	NA	H6WRY2	Salmonella_phage	40.7	1.8e-29
QAX61434.1|2977833_2978142_-	hypothetical protein	NA	A0A1P8DTP0	Salmonella_phage	69.3	1.8e-30
QAX61435.1|2978145_2978604_-	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	77.4	7.1e-44
QAX61436.1|2978600_2978948_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	1.8e-52
QAX61437.1|2978958_2979708_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
QAX61438.1|2979710_2980694_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.3	2.1e-162
QAX61439.1|2980778_2981099_-	hypothetical protein	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
QAX61440.1|2981133_2981361_-	transcriptional regulator	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
QAX61441.1|2981466_2981901_+	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
QAX61442.1|2982197_2982329_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	97.7	1.2e-17
QAX61443.1|2982377_2982728_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	94.0	3.5e-59
QAX61444.1|2982854_2986055_+	DNA breaking-rejoining protein	NA	S4TNL0	Salmonella_phage	78.8	0.0e+00
QAX61445.1|2986017_2987175_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
QAX61446.1|2987217_2987457_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX61447.1|2987497_2987746_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAX61448.1|2987790_2989083_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	4.5e-253
QAX61449.1|2989277_2990480_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAX61450.1|2990557_2991994_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAX61451.1|2992238_2993453_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA	NA
QAX61452.1|2993539_2993773_+	hypothetical protein	NA	NA	NA	NA	NA
QAX61453.1|2993769_2994231_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAX61454.1|2994431_2995832_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
QAX61455.1|2996438_2997530_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
QAX61456.1|2997714_2998905_+	aspartate aminotransferase	NA	NA	NA	NA	NA
QAX61457.1|2998966_2999614_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QAX61458.1|2999641_3000190_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
QAX61459.1|3000449_3002291_-	L,D-transpeptidase	NA	NA	NA	NA	NA
QAX61460.1|3002635_3007102_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
QAX61461.1|3007101_3007806_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
QAX61462.1|3007786_3009109_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
QAX61463.1|3009101_3009905_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
>prophage 9
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	3059968	3068699	4957714	protease,transposase	Enterobacteria_phage(14.29%)	10	NA	NA
QAX61502.1|3059968_3061223_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
QAX61503.1|3061204_3061513_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61504.1|3061685_3062144_-|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
QAX61505.1|3062100_3062283_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61506.1|3062335_3064612_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAX61507.1|3064642_3064963_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAX61508.1|3065286_3065508_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAX61509.1|3065462_3065657_-	hypothetical protein	NA	NA	NA	NA	NA
QAX61510.1|3065637_3067584_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
QAX61511.1|3067580_3068699_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 10
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	3691671	3700049	4957714		Enterobacteria_phage(37.5%)	10	NA	NA
QAX62071.1|3691671_3692700_-	ash family protein	NA	Q8W643	Enterobacteria_phage	53.3	1.0e-13
QAX62072.1|3692693_3692876_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
QAX62073.1|3692868_3693702_-	antA/AntB antirepressor family protein	NA	G9L6G1	Escherichia_phage	47.5	9.0e-21
QAX62074.1|3693714_3694146_-	hypothetical protein	NA	A0A1W6JPH9	Morganella_phage	49.0	3.9e-28
QAX62075.1|3694145_3694349_-	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	50.9	4.7e-08
QAX62076.1|3694396_3694612_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
QAX62077.1|3694777_3695992_-	DUF4102 domain-containing protein	NA	Q7M297	Enterobacteria_phage	56.5	9.7e-133
QAX62078.1|3696348_3697599_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
QAX62079.1|3697610_3698714_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
QAX62080.1|3698996_3700049_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
>prophage 11
CP033255	Salmonella enterica subsp. enterica strain CFSA244 chromosome, complete genome	4957714	4538102	4585145	4957714	tail,tRNA,plate	Burkholderia_phage(40.91%)	50	NA	NA
QAX62813.1|4538102_4539101_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAX62814.1|4539188_4540499_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAX62815.1|4540745_4541261_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAX62816.1|4541359_4541569_-	CsbD family protein	NA	NA	NA	NA	NA
QAX63382.1|4541590_4541704_-	hypothetical protein	NA	NA	NA	NA	NA
QAX62817.1|4541700_4543026_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
QAX62818.1|4543204_4543813_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAX62819.1|4543921_4544290_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAX62820.1|4544460_4546881_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAX62821.1|4546979_4547852_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAX62822.1|4547865_4548363_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAX62823.1|4548543_4549461_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAX62824.1|4549624_4550983_-	maltoporin	NA	NA	NA	NA	NA
QAX62825.1|4551071_4552181_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAX62826.1|4552542_4553733_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAX62827.1|4553864_4555409_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAX62828.1|4555423_4556314_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAX62829.1|4556479_4556890_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAX62830.1|4557032_4559129_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAX62831.1|4559128_4559866_-	hypothetical protein	NA	NA	NA	NA	NA
QAX62832.1|4559862_4560501_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAX62833.1|4560564_4560807_-	outer membrane protein	NA	NA	NA	NA	NA
QAX62834.1|4561250_4562900_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAX62835.1|4563244_4564594_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAX62836.1|4564726_4565074_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAX62837.1|4565649_4565937_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QAX62838.1|4565939_4566545_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAX62839.1|4566557_4566872_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAX62840.1|4567031_4567487_+	hypothetical protein	NA	NA	NA	NA	NA
QAX62841.1|4567483_4567681_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAX62842.1|4567670_4569098_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
QAX62843.1|4569097_4569622_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAX62844.1|4569673_4569991_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAX62845.1|4569950_4570079_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAX62846.1|4570175_4572530_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
QAX62847.1|4572529_4573483_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAX62848.1|4573482_4573692_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAX62849.1|4573679_4574723_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
QAX62850.1|4574732_4575455_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
QAX62851.1|4575782_4576145_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
QAX62852.1|4576141_4577071_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
QAX62853.1|4577070_4578618_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
QAX62854.1|4578780_4579140_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAX62855.1|4579130_4580246_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
QAX62856.1|4580238_4580871_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
QAX62857.1|4580873_4582619_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
QAX62858.1|4582623_4583229_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
QAX62859.1|4583225_4583681_+	hypothetical protein	NA	NA	NA	NA	NA
QAX62860.1|4583929_4584220_+	hypothetical protein	NA	NA	NA	NA	NA
QAX62861.1|4584416_4585145_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
