The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	662731	707854	4990775	tRNA,integrase,capsid,tail,head,terminase,portal,holin	Cronobacter_phage(66.67%)	53	662882:662897	695732:695747
QAX64192.1|662731_664297_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.9	1.0e-12
662882:662897	attL	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX64193.1|664293_664941_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
QAX64194.1|665172_665940_+	siderophore-interacting protein	NA	NA	NA	NA	NA
QAX64195.1|666197_667979_-	ATP-binding protein	NA	X2KLG0	Campylobacter_phage	23.2	6.4e-08
QAX64196.1|667968_669006_-|integrase	integrase	integrase	F1BUS9	Erwinia_phage	63.9	1.5e-121
QAX64197.1|669009_669576_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	32.8	1.3e-18
QAX64198.1|669592_670174_-	phage repressor protein	NA	A0A218M4J1	Erwinia_phage	37.2	1.2e-27
QAX64199.1|670317_670539_+	regulator	NA	NA	NA	NA	NA
QAX64200.1|670569_671073_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
QAX64201.1|671082_671310_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64202.1|671299_671725_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	49.6	2.2e-23
QAX64203.1|671724_672126_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
QAX64204.1|672193_672427_+	DUF2732 family protein	NA	NA	NA	NA	NA
QAX64205.1|672417_673278_+	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.0	1.1e-130
QAX64206.1|673274_675296_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.5	7.9e-297
QAX64207.1|675415_675622_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64208.1|675595_675919_-	transcriptional regulator	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
QAX64209.1|675915_676977_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	76.8	6.7e-162
QAX64210.1|676973_678749_-|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	83.1	9.8e-291
QAX64211.1|678909_679713_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.0	2.0e-78
QAX64212.1|679774_680797_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.5	3.9e-159
QAX64213.1|680800_681502_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
QAX64214.1|681547_682051_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	82.7	1.8e-64
QAX64215.1|682047_682554_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	1.2e-63
QAX64216.1|682550_683258_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.1	1.3e-100
QAX64217.1|683254_684382_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	1.9e-175
QAX64218.1|684378_684834_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
QAX64219.1|684843_685137_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
QAX64220.1|685133_685475_+	M15 family peptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
QAX64221.1|685474_685807_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.9	1.5e-35
QAX64222.1|685778_685967_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	77.4	1.5e-21
QAX64223.1|685953_686211_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
QAX64224.1|686398_688369_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	70.8	3.2e-274
QAX64225.1|688365_688695_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
QAX64226.1|688691_689876_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.4	6.7e-179
QAX64227.1|689862_690456_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	82.6	5.0e-90
QAX64228.1|690465_692700_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	73.7	7.2e-182
QAX64229.1|692712_693267_+|tail	tail fiber assembly protein	tail	S4TUB9	Salmonella_phage	89.0	2.7e-90
QAX64230.1|693256_693982_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	53.5	3.7e-63
QAX64231.1|693953_694499_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	3.2e-59
QAX64232.1|694498_696202_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.4	9.9e-224
695732:695747	attR	ACCACGGTGAAAGCCA	NA	NA	NA	NA
QAX64233.1|696953_697139_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64234.1|697108_697873_+	reverse transcriptase	NA	NA	NA	NA	NA
QAX64235.1|698196_698703_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA	NA
QAX68266.1|698826_700674_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
QAX64236.1|700823_702569_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
QAX64237.1|702804_703020_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
QAX64238.1|703247_704261_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
QAX68267.1|704164_704434_-	hypothetical protein	NA	NA	NA	NA	NA
QAX64239.1|704511_705123_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
QAX64240.1|705229_705589_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
QAX64241.1|705686_706508_+	undecaprenyl-diphosphatase	NA	NA	NA	NA	NA
QAX64242.1|706612_707854_-|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	47.7	5.5e-91
>prophage 2
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	1160314	1196118	4990775	integrase,transposase	Escherichia_phage(33.33%)	34	1147738:1147751	1196748:1196761
1147738:1147751	attL	GCATAATTCATTGA	NA	NA	NA	NA
QAX64674.1|1160314_1161019_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX64675.1|1161995_1162511_+	thermonuclease family protein	NA	V5UN65	Mycobacterium_phage	28.3	7.1e-08
QAX64676.1|1162507_1163440_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64677.1|1163495_1164275_+	DNA repair protein	NA	NA	NA	NA	NA
QAX68283.1|1164328_1164559_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64678.1|1164622_1164922_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64679.1|1165171_1165780_-	hypothetical protein	NA	NA	NA	NA	NA
QAX64680.1|1165912_1167121_+|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
QAX64681.1|1167486_1168692_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
QAX64682.1|1169135_1169456_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QAX64683.1|1169448_1169835_+	amino acid-binding protein	NA	NA	NA	NA	NA
QAX64684.1|1169842_1170529_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QAX64685.1|1170506_1171133_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
QAX64686.1|1171211_1172417_+	tetracycline efflux MFS transporter Tet(B)	NA	A0A2H4UVM2	Bodo_saltans_virus	24.4	3.0e-09
QAX64687.1|1173700_1174135_-	mercuric resistance operon regulatory protein	NA	NA	NA	NA	NA
QAX64688.1|1174206_1174557_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
QAX64689.1|1174570_1174846_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
QAX68284.1|1174881_1175304_+	mercury transporter MerC	NA	NA	NA	NA	NA
QAX64690.1|1175355_1177050_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	8.8e-39
QAX64691.1|1177067_1177430_+	transcriptional regulator	NA	NA	NA	NA	NA
QAX64692.1|1177426_1177663_+	mercury resistance protein	NA	NA	NA	NA	NA
QAX64693.1|1177659_1178367_+	EAL domain-containing protein	NA	NA	NA	NA	NA
QAX64694.1|1178405_1179710_+|integrase	integrase	integrase	NA	NA	NA	NA
QAX64695.1|1179756_1180461_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX64696.1|1181142_1181715_-	DNA-invertase Hin	NA	A0A0A7NPV4	Enterobacteria_phage	72.6	8.8e-68
QAX64697.1|1181806_1183327_+	flagellin FliC	NA	NA	NA	NA	NA
QAX64698.1|1183394_1183934_+	phase 1 flagellin gene repressor	NA	NA	NA	NA	NA
QAX64699.1|1184713_1185876_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.9	5.2e-51
QAX64700.1|1186154_1188137_+	DNA helicase	NA	NA	NA	NA	NA
QAX64701.1|1188133_1188772_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64702.1|1190485_1191082_-	DUF4102 domain-containing protein	NA	A0A1B5FPC6	Escherichia_phage	91.3	2.6e-99
QAX68285.1|1191659_1192943_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64703.1|1193202_1195077_-	hypothetical protein	NA	NA	NA	NA	NA
QAX64704.1|1195242_1196118_-|integrase	integrase	integrase	NA	NA	NA	NA
1196748:1196761	attR	GCATAATTCATTGA	NA	NA	NA	NA
>prophage 3
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	1274331	1349729	4990775	tRNA,integrase,capsid,protease,transposase,tail,terminase,lysis,head,portal,holin	Salmonella_phage(43.33%)	94	1266412:1266428	1355576:1355592
1266412:1266428	attL	CGCCTTATCCGGCCTAC	NA	NA	NA	NA
QAX64757.1|1274331_1275369_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAX64758.1|1275484_1276174_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAX64759.1|1276492_1276876_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAX64760.1|1276937_1277525_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA	NA
QAX68293.1|1277627_1278527_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAX64761.1|1278544_1279879_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAX64762.1|1280009_1280747_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
QAX64763.1|1280731_1282354_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAX64764.1|1282438_1282618_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64765.1|1282617_1282782_+	rpoE leader peptide RseD	NA	NA	NA	NA	NA
QAX64766.1|1282778_1283354_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAX64767.1|1283385_1284036_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAX64768.1|1284035_1284992_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAX64769.1|1284988_1285468_+	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
QAX64770.1|1285497_1285614_+	transcriptional regulator	NA	NA	NA	NA	NA
QAX64771.1|1285965_1287195_+	DUF4102 domain-containing protein	NA	H6WRW7	Salmonella_phage	94.4	2.9e-233
QAX64772.1|1287172_1287457_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAX64773.1|1287497_1287737_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX64774.1|1287779_1288937_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.5	3.9e-216
QAX64775.1|1288899_1291827_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
QAX64776.1|1291953_1292304_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAX64777.1|1292325_1292484_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAX64778.1|1292882_1293287_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	1.6e-71
QAX64779.1|1293416_1293653_+	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
QAX64780.1|1293618_1293993_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAX64781.1|1294077_1295061_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
QAX64782.1|1295063_1295813_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAX64783.1|1295823_1296171_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	4.8e-53
QAX64784.1|1296167_1296692_+	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	99.4	1.8e-91
QAX64785.1|1296691_1297165_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	80.1	1.6e-67
QAX64786.1|1297556_1297838_+	hypothetical protein	NA	A0A0K2FIU9	Enterobacteria_phage	92.5	1.4e-47
QAX64787.1|1298029_1298269_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	1.1e-37
QAX64788.1|1298258_1298564_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
QAX64789.1|1298603_1299206_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	1.1e-108
QAX64790.1|1299205_1299412_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAX64791.1|1299414_1300026_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
QAX64792.1|1300022_1300163_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX64793.1|1300159_1300837_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAX64794.1|1300833_1301019_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64795.1|1301109_1301673_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAX64796.1|1302179_1302368_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64797.1|1302582_1303269_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAX68294.1|1303544_1303874_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAX64798.1|1303857_1304310_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	1.0e-79
QAX68295.1|1304327_1304780_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAX64799.1|1305015_1305417_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAX64800.1|1305703_1306249_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAX64801.1|1306220_1308152_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAX64802.1|1308135_1308339_+|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAX64803.1|1308335_1309916_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
QAX64804.1|1309905_1311402_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAX64805.1|1311414_1311762_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAX64806.1|1311816_1312845_+|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAX64807.1|1312902_1313262_+	DNA packaging protein	NA	NA	NA	NA	NA
QAX64808.1|1313272_1313656_+|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAX64809.1|1313683_1314262_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
QAX68296.1|1314310_1315441_-|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	100.0	9.2e-218
QAX64810.1|1315549_1315951_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAX64811.1|1315958_1316705_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.5	1.9e-99
QAX64812.1|1316755_1317151_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAX64813.1|1317147_1317486_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAX64814.1|1317457_1320553_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.3	1.7e-274
QAX64815.1|1320555_1320885_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAX64816.1|1320894_1321593_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	76.3	5.5e-104
QAX64817.1|1321599_1322337_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	85.0	5.2e-129
QAX64818.1|1322234_1322882_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAX64819.1|1322943_1326306_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.7	0.0e+00
QAX64820.1|1326344_1326587_+	hypothetical protein	NA	NA	NA	NA	NA
QAX64821.1|1326640_1329013_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	65.6	1.1e-90
QAX64822.1|1329009_1329834_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAX64823.1|1329823_1330402_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAX64824.1|1330498_1330726_-	phage virulence factor	NA	NA	NA	NA	NA
QAX64825.1|1330832_1331045_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAX68297.1|1331107_1331173_+	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
QAX64826.1|1331752_1331917_+|integrase	integrase	integrase	NA	NA	NA	NA
QAX64827.1|1331837_1332383_-|transposase	transposase	transposase	NA	NA	NA	NA
QAX64828.1|1332629_1332767_-	hypothetical protein	NA	NA	NA	NA	NA
QAX64829.1|1333251_1334745_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAX64830.1|1335149_1336949_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAX64831.1|1336965_1337940_+	S26 family signal peptidase	NA	NA	NA	NA	NA
QAX68298.1|1338213_1338894_+	ribonuclease 3	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAX64832.1|1338890_1339796_+	GTPase Era	NA	NA	NA	NA	NA
QAX64833.1|1339807_1340536_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAX64834.1|1340547_1341279_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAX64835.1|1341278_1341659_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAX64836.1|1341770_1342031_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
QAX64837.1|1342068_1342995_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
QAX64838.1|1343110_1344307_+	MFS transporter	NA	NA	NA	NA	NA
QAX64839.1|1344328_1345246_+	oxidoreductase	NA	NA	NA	NA	NA
QAX64840.1|1345284_1346133_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
QAX64841.1|1346248_1347142_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
QAX64842.1|1347152_1348514_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAX64843.1|1348517_1349153_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAX64844.1|1349177_1349729_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
1355576:1355592	attR	GTAGGCCGGATAAGGCG	NA	NA	NA	NA
>prophage 4
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	1721182	1733473	4990775	tail,holin	Salmonella_phage(40.0%)	10	NA	NA
QAX65175.1|1721182_1723549_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
QAX68309.1|1723877_1724867_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
QAX65176.1|1724881_1725250_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
QAX65177.1|1725278_1726610_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
QAX65178.1|1726906_1727236_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
QAX65179.1|1727828_1729070_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
QAX65180.1|1729072_1729600_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
QAX65181.1|1729977_1730421_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
QAX65182.1|1732651_1732942_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
QAX65183.1|1732969_1733473_+	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
>prophage 5
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	1805525	1814696	4990775	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAX65252.1|1805525_1806473_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
QAX65253.1|1806456_1807188_+	ABC transporter permease	NA	NA	NA	NA	NA
QAX65254.1|1807168_1807276_-	protein YohO	NA	NA	NA	NA	NA
QAX65255.1|1807335_1808067_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
QAX65256.1|1808289_1809975_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
QAX65257.1|1809971_1810691_+	DNA-binding response regulator	NA	NA	NA	NA	NA
QAX65258.1|1810737_1811205_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAX65259.1|1811261_1811792_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
QAX65260.1|1811963_1812422_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
QAX65261.1|1812662_1814696_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 6
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	1883004	1893510	4990775		Enterobacteria_phage(37.5%)	10	NA	NA
QAX65317.1|1883004_1884408_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
QAX65318.1|1884585_1885479_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAX65319.1|1885855_1886941_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAX65320.1|1886940_1887840_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
QAX65321.1|1887887_1888766_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
QAX65322.1|1888766_1889318_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
QAX65323.1|1889323_1890316_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAX65324.1|1890312_1891086_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAX65325.1|1891090_1892170_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
QAX65326.1|1892196_1893510_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 7
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	1979504	2030191	4990775	integrase,capsid,protease,tail,head,terminase,plate,portal,holin	Salmonella_phage(80.0%)	72	1974082:1974096	1990212:1990226
1974082:1974096	attL	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAX65409.1|1979504_1979978_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
QAX65410.1|1980625_1980916_-	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
QAX65411.1|1981287_1982085_-	protein MtfA	NA	NA	NA	NA	NA
QAX65412.1|1982376_1983366_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
QAX65413.1|1983367_1983610_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
QAX65414.1|1983634_1984204_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
QAX65415.1|1984207_1984789_-	molecular chaperone DnaJ	NA	A0A192Y6F5	Salmonella_phage	100.0	4.7e-109
QAX65416.1|1984799_1985057_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
QAX65417.1|1985058_1985592_-	hypothetical protein	NA	A0A192Y7N1	Salmonella_phage	100.0	2.5e-101
QAX65418.1|1985662_1986202_-	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
QAX65419.1|1986338_1987166_-	DUF2303 family protein	NA	A0A192Y6E5	Salmonella_phage	100.0	2.6e-153
QAX65420.1|1987223_1987595_-	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	100.0	2.5e-63
QAX65421.1|1987942_1988359_+	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	100.0	6.4e-76
QAX65422.1|1988321_1988660_-	hypothetical protein	NA	A0A1C9IHZ4	Salmonella_phage	100.0	7.0e-57
QAX65423.1|1988865_1989561_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
QAX65424.1|1989534_1989720_+	amino acid permease	NA	NA	NA	NA	NA
QAX65425.1|1989658_1989883_+	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
QAX65426.1|1989911_1990466_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
1990212:1990226	attR	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAX65427.1|1990462_1991605_+	peptidase	NA	A0A1C9IHV9	Salmonella_phage	100.0	1.5e-212
QAX65428.1|1991601_1991826_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QAX65429.1|1991822_1992797_+	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	100.0	2.3e-169
QAX65430.1|1992793_1993267_+	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	100.0	4.9e-56
QAX65431.1|1993263_1994139_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	99.3	2.7e-169
QAX65432.1|1994147_1994537_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	100.0	4.9e-70
QAX65433.1|1994508_1995414_+	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	100.0	1.1e-162
QAX68317.1|1995421_1996411_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	100.0	2.1e-194
QAX65434.1|1996424_1997177_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	100.0	1.8e-145
QAX68318.1|1997327_1997585_+	hypothetical protein	NA	A0A1C9IHX4	Salmonella_phage	100.0	3.1e-41
QAX65435.1|1997730_1998117_+	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	100.0	7.0e-61
QAX65436.1|1998103_1998385_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	9.7e-20
QAX65437.1|1998384_1998999_+	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	100.0	5.7e-113
QAX65438.1|1998995_1999388_+	DUF2570 domain-containing protein	NA	A0A192Y6H8	Salmonella_phage	100.0	2.8e-65
QAX68319.1|1999850_2000183_+	hypothetical protein	NA	A0A192Y5Y1	Salmonella_phage	100.0	2.8e-58
QAX65439.1|2000233_2000584_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	94.8	9.8e-62
QAX65440.1|2000700_2001204_+|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	3.6e-89
QAX65441.1|2001200_2002934_+|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	99.5	0.0e+00
QAX65442.1|2002945_2003128_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
QAX65443.1|2003127_2004369_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.8	2.0e-242
QAX65444.1|2004310_2004997_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	97.4	2.0e-122
QAX65445.1|2005011_2006217_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	98.0	9.4e-221
QAX65446.1|2006266_2006467_+	hypothetical protein	NA	S5FNU1	Shigella_phage	98.5	5.8e-27
QAX65447.1|2006469_2006793_+|head,tail	phage gp6-like head-tail connector protein	head,tail	U5P072	Shigella_phage	97.2	2.4e-54
QAX65448.1|2006789_2007194_+|head,tail	head-tail adaptor protein	head,tail	A0A192Y6C2	Salmonella_phage	74.6	3.7e-52
QAX65449.1|2007165_2007678_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	87.6	1.6e-81
QAX65450.1|2007674_2008232_+	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	93.4	1.1e-96
QAX65451.1|2008253_2008418_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	94.4	7.1e-23
QAX65452.1|2008407_2009904_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.4	3.0e-277
QAX65453.1|2009903_2010260_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	99.2	1.3e-61
QAX65454.1|2010256_2010583_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
QAX65455.1|2010667_2012593_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	97.3	0.0e+00
QAX65456.1|2012609_2013059_+	hypothetical protein	NA	NA	NA	NA	NA
QAX65457.1|2013118_2014459_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.3	9.7e-251
QAX65458.1|2014455_2015514_+|plate	baseplate protein	plate	A0A192Y7L7	Salmonella_phage	99.7	3.0e-202
QAX65459.1|2015513_2016047_+|plate	phage baseplate assembly protein V	plate	Q8HAB9	Salmonella_phage	100.0	1.4e-96
QAX65460.1|2016051_2016465_+	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	99.3	1.2e-74
QAX65461.1|2016457_2017537_+|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	99.2	7.2e-204
QAX65462.1|2017539_2018127_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
QAX65463.1|2018113_2019676_+|tail	phage tail protein	tail	A0A192Y7M1	Salmonella_phage	98.5	1.7e-283
QAX65464.1|2019645_2020251_+|tail	tail fiber assembly protein	tail	A0A192Y8L2	Salmonella_phage	100.0	2.7e-107
QAX65465.1|2020364_2020598_-	hypothetical protein	NA	A0A192Y6D5	Salmonella_phage	100.0	1.2e-36
QAX65466.1|2020833_2021247_-	hypothetical protein	NA	A0A192Y6F0	Salmonella_phage	100.0	2.9e-73
QAX65467.1|2021243_2021456_-	hypothetical protein	NA	A0A192Y5V6	Salmonella_phage	100.0	2.7e-30
QAX65468.1|2022429_2022672_+	hypothetical protein	NA	NA	NA	NA	NA
QAX65469.1|2022649_2022811_+	hypothetical protein	NA	NA	NA	NA	NA
QAX65470.1|2022937_2023357_+	protein UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAX65471.1|2023359_2024628_+	protein UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
QAX65472.1|2025082_2025295_+	cold-shock protein CspJ	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAX68320.1|2025305_2025494_+	cold-shock protein	NA	NA	NA	NA	NA
QAX65473.1|2025754_2026951_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
QAX65474.1|2027600_2027900_+	hypothetical protein	NA	NA	NA	NA	NA
QAX65475.1|2027991_2028687_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
QAX65476.1|2028760_2030191_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 8
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	2134235	2141044	4990775	integrase,tail	Salmonella_phage(33.33%)	12	2136445:2136467	2146160:2146182
QAX65587.1|2134235_2134466_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
QAX65588.1|2134603_2134978_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
QAX65589.1|2134978_2135854_+	copper resistance D family protein	NA	NA	NA	NA	NA
QAX65590.1|2135870_2136224_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
QAX68324.1|2136281_2136401_+	hypothetical protein	NA	NA	NA	NA	NA
2136445:2136467	attL	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
QAX68323.1|2136597_2137452_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
QAX68325.1|2137511_2138006_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
QAX65591.1|2138195_2138426_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
QAX65592.1|2138479_2139013_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
QAX65593.1|2139269_2139437_-	lytic enzyme	NA	NA	NA	NA	NA
QAX65594.1|2139501_2139690_-	hypothetical protein	NA	NA	NA	NA	NA
QAX65595.1|2140162_2141044_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
2146160:2146182	attR	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
>prophage 9
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	2928127	3019044	4990775	tRNA,protease,tail,terminase,lysis,holin	Salmonella_phage(59.57%)	95	NA	NA
QAX66374.1|2928127_2928808_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
QAX66375.1|2929153_2929363_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66376.1|2929428_2930088_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
QAX66377.1|2930174_2930504_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAX66378.1|2930500_2930782_-	acylphosphatase	NA	NA	NA	NA	NA
QAX66379.1|2930830_2931610_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAX66380.1|2931635_2932184_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAX66381.1|2932398_2933610_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
QAX66382.1|2933667_2933985_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
QAX66383.1|2934029_2934446_-	CoA-binding protein	NA	NA	NA	NA	NA
QAX66384.1|2934616_2935279_+	DUF2057 family protein	NA	NA	NA	NA	NA
QAX66385.1|2935373_2935832_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAX66386.1|2935867_2937922_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
QAX66387.1|2938045_2938492_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAX66388.1|2938510_2940664_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAX66389.1|2940650_2941256_-	DNA transformation protein	NA	NA	NA	NA	NA
QAX66390.1|2941472_2941982_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAX66391.1|2942338_2943391_+	outer membrane protein A	NA	NA	NA	NA	NA
QAX66392.1|2943462_2943915_-	macrodomain Ter protein	NA	NA	NA	NA	NA
QAX66393.1|2944100_2945861_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAX66394.1|2945929_2946448_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
QAX66395.1|2946547_2946715_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAX66396.1|2946970_2947534_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
QAX66397.1|2947530_2949171_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
QAX66398.1|2949175_2950429_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
QAX66399.1|2950443_2952351_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
QAX66400.1|2952363_2954472_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
QAX66401.1|2954570_2955680_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAX66402.1|2955676_2956219_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAX66403.1|2956384_2957395_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
QAX66404.1|2957602_2960215_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
QAX66405.1|2960641_2960833_+	DinI family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAX66406.1|2961103_2961790_+	virulence protein	NA	NA	NA	NA	NA
QAX66407.1|2961774_2962074_+	hypothetical protein	NA	NA	NA	NA	NA
QAX66408.1|2962142_2962769_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAX66409.1|2963416_2964385_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.4	3.0e-193
QAX66410.1|2964860_2965442_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAX66411.1|2965441_2967880_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.8	7.5e-92
QAX66412.1|2967933_2968176_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66413.1|2968214_2971565_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.6	0.0e+00
QAX66414.1|2971636_2972341_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
QAX66415.1|2972238_2972976_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAX66416.1|2972985_2973681_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAX66417.1|2973770_2974304_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAX66418.1|2974420_2974918_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAX66419.1|2975017_2975350_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	4.4e-35
QAX66420.1|2976470_2977016_-|terminase	terminase small subunit	terminase	K7P7G0	Enterobacteria_phage	61.3	4.5e-53
QAX66421.1|2977029_2977245_-	hypothetical protein	NA	NA	NA	NA	NA
QAX68363.1|2977484_2977931_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	90.4	1.2e-64
QAX66422.1|2977948_2978401_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	7.9e-80
QAX68364.1|2978384_2978714_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.9e-55
QAX66423.1|2978989_2979676_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAX66424.1|2980036_2980486_+	hypothetical protein	NA	NA	NA	NA	NA
QAX66425.1|2980621_2980747_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66426.1|2980941_2981631_-	antiterminator	NA	I6PDF8	Cronobacter_phage	50.6	1.1e-59
QAX66427.1|2981627_2981768_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAX66428.1|2981764_2982376_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	98.0	2.7e-91
QAX66429.1|2982378_2982585_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.0e-34
QAX66430.1|2982584_2983187_-	DUF1367 family protein	NA	A0A0M4QX23	Salmonella_phage	99.0	7.5e-110
QAX66431.1|2983271_2983493_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66432.1|2983602_2983836_-	DNA damage-inducible protein I	NA	A0A0M4REN2	Salmonella_phage	87.0	1.2e-31
QAX66433.1|2984427_2985024_+	hypothetical protein	NA	NA	NA	NA	NA
QAX66434.1|2985035_2986013_+	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
QAX68365.1|2986067_2986325_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66435.1|2986324_2986969_-	hypothetical protein	NA	H6WRY2	Salmonella_phage	40.7	1.8e-29
QAX66436.1|2986972_2987281_-	hypothetical protein	NA	A0A1P8DTP0	Salmonella_phage	69.3	1.8e-30
QAX66437.1|2987284_2987743_-	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	77.4	7.1e-44
QAX66438.1|2987739_2988087_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	90.4	1.8e-52
QAX66439.1|2988097_2988847_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	100.0	4.3e-139
QAX66440.1|2988849_2989833_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.3	2.1e-162
QAX66441.1|2989917_2990238_-	hypothetical protein	NA	A0A0M4RU01	Salmonella_phage	100.0	1.3e-52
QAX66442.1|2990272_2990500_-	transcriptional regulator	NA	H6WRX5	Salmonella_phage	45.9	1.7e-14
QAX66443.1|2990605_2991040_+	helix-turn-helix domain-containing protein	NA	H6WRX4	Salmonella_phage	38.2	2.5e-14
QAX66444.1|2991336_2991468_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	97.7	1.2e-17
QAX66445.1|2991516_2991867_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	94.0	3.5e-59
QAX66446.1|2991993_2995194_+	DNA breaking-rejoining protein	NA	S4TNL0	Salmonella_phage	78.8	0.0e+00
QAX66447.1|2995156_2996314_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
QAX66448.1|2996356_2996596_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAX66449.1|2996636_2996885_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAX66450.1|2996929_2998222_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	4.5e-253
QAX66451.1|2998416_2999619_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAX66452.1|2999696_3001133_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAX66453.1|3001377_3002592_-	PLP-dependent lyase/thiolase	NA	NA	NA	NA	NA
QAX66454.1|3002678_3002912_+	hypothetical protein	NA	NA	NA	NA	NA
QAX66455.1|3002908_3003370_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAX66456.1|3003570_3004971_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
QAX66457.1|3005577_3006669_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	2.2e-99
QAX66458.1|3006853_3008044_+	aspartate aminotransferase	NA	NA	NA	NA	NA
QAX66459.1|3008105_3008753_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
QAX66460.1|3008780_3009329_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
QAX66461.1|3009588_3011430_-	L,D-transpeptidase	NA	NA	NA	NA	NA
QAX66462.1|3011774_3016241_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
QAX66463.1|3016240_3016945_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
QAX66464.1|3016925_3018248_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
QAX66465.1|3018240_3019044_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
>prophage 10
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	3069107	3077839	4990775	protease,transposase	Enterobacteria_phage(14.29%)	10	NA	NA
QAX66503.1|3069107_3070362_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
QAX66504.1|3070377_3070653_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66505.1|3070825_3071284_-|transposase	IS200/IS605 family transposase IS200F	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
QAX66506.1|3071240_3071423_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66507.1|3071475_3073752_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAX66508.1|3073782_3074103_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAX66509.1|3074426_3074648_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAX66510.1|3074602_3074797_-	hypothetical protein	NA	NA	NA	NA	NA
QAX66511.1|3074777_3076724_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
QAX66512.1|3076720_3077839_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 11
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	3686152	3732023	4990775	integrase,coat,protease,tail,terminase,lysis,portal	Salmonella_phage(56.72%)	68	3677854:3677870	3741237:3741253
3677854:3677870	attL	ACGCGAATTTCAATATC	NA	NA	NA	NA
QAX67067.1|3686152_3686332_-	hypothetical protein	NA	M1E3P7	Enterobacteria_phage	92.3	4.3e-13
QAX67068.1|3686448_3686811_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	100.0	5.0e-61
QAX67069.1|3686807_3687740_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	100.0	5.5e-176
QAX67070.1|3687729_3689187_+	hypothetical protein	NA	A8CG94	Salmonella_phage	100.0	1.3e-240
QAX67071.1|3689245_3691249_-	endorhamnosidase	NA	E7C9U9	Salmonella_phage	100.0	0.0e+00
QAX67072.1|3691384_3691636_+	Arc family DNA-binding protein	NA	E7C9U8	Salmonella_phage	100.0	1.4e-38
QAX68395.1|3691735_3691915_+	hypothetical protein	NA	B8K1I9	Salmonella_phage	100.0	2.1e-28
QAX67073.1|3691928_3692294_-	hypothetical protein	NA	E7C9U7	Salmonella_phage	100.0	8.1e-67
QAX67074.1|3692324_3692654_+	hypothetical protein	NA	NA	NA	NA	NA
QAX67075.1|3692671_3694585_-	DNA transfer protein	NA	E7C9U6	Salmonella_phage	100.0	0.0e+00
QAX67076.1|3694584_3695868_-	acyltransferase	NA	E7C9U5	Salmonella_phage	94.7	4.5e-221
QAX67077.1|3695878_3696568_-	DNA transfer protein	NA	E7C9U4	Salmonella_phage	100.0	4.3e-109
QAX67078.1|3696570_3697026_-	DUF2824 family protein	NA	B8K1I4	Salmonella_phage	100.0	1.4e-87
QAX67079.1|3697025_3697727_-|tail	phage tail protein	tail	B8K1I3	Salmonella_phage	98.7	1.8e-70
QAX67080.1|3697730_3699149_-	hypothetical protein	NA	A0A220NQZ5	Salmonella_phage	99.6	5.4e-276
QAX67081.1|3699108_3699609_-	hypothetical protein	NA	E7C9U0	Salmonella_phage	100.0	2.5e-90
QAX67082.1|3699592_3700153_-	hypothetical protein	NA	E7C9T9	Salmonella_phage	100.0	1.3e-103
QAX67083.1|3700193_3701486_-|coat	coat protein	coat	Q76H21	Enterobacteria_phage	99.5	1.2e-242
QAX67084.1|3701485_3702397_-	scaffolding protein	NA	Q5C834	Enterobacteria_phage	100.0	1.7e-161
QAX67085.1|3702410_3704588_-|portal	portal protein	portal	Q76H23	Enterobacteria_phage	100.0	0.0e+00
QAX67086.1|3704587_3706087_-|terminase	terminase	terminase	Q76H24	Enterobacteria_phage	100.0	2.8e-307
QAX67087.1|3706064_3706553_-	DNA-packaging protein	NA	Q76H25	Enterobacteria_phage	100.0	1.0e-88
QAX67088.1|3706556_3706961_-	Decoration protein	NA	Q76H26	Enterobacteria_phage	100.0	1.1e-67
QAX67089.1|3706960_3707350_-	hypothetical protein	NA	Q76H27	Enterobacteria_phage	100.0	3.9e-75
QAX67090.1|3707353_3707596_-	DUF2560 family protein	NA	Q76H60	Enterobacteria_phage	100.0	1.7e-33
QAX67091.1|3707818_3708349_-	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	100.0	1.3e-94
QAX67092.1|3708302_3708527_-	hypothetical protein	NA	A0A1V0E5I0	Salmonella_phage	88.7	3.6e-25
QAX67093.1|3708561_3709029_-|lysis	lysis protein	lysis	Q76H63	Enterobacteria_phage	100.0	1.7e-77
QAX68396.1|3709025_3709523_-	lysozyme	NA	B8K1G9	Salmonella_phage	100.0	4.5e-92
QAX67094.1|3709500_3709704_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
QAX67095.1|3710240_3711014_-	antitermination protein	NA	Q76H66	Enterobacteria_phage	96.5	1.2e-128
QAX67096.1|3711171_3711414_-	hypothetical protein	NA	A0A1V0E5R3	Salmonella_phage	92.5	1.3e-36
QAX67097.1|3711410_3711593_-	hypothetical protein	NA	C6ZR61	Salmonella_phage	95.0	3.6e-23
QAX67098.1|3711580_3712051_-	hypothetical protein	NA	C6ZR60	Salmonella_phage	99.4	8.8e-90
QAX67099.1|3712031_3712268_-	hypothetical protein	NA	C6ZR59	Salmonella_phage	97.4	3.9e-38
QAX67100.1|3712260_3712437_-	protein ninF	NA	A0A192Y808	Salmonella_phage	91.4	6.9e-24
QAX67101.1|3712429_3712831_-	hypothetical protein	NA	G9L690	Escherichia_phage	85.7	2.7e-63
QAX67102.1|3712833_3713010_-	NinE family protein	NA	A0A220NRK6	Escherichia_phage	98.3	7.9e-28
QAX67103.1|3712976_3713150_-	protein ninD	NA	C6ZR56	Salmonella_phage	93.0	7.0e-29
QAX67104.1|3713146_3714019_-	hypothetical protein	NA	I6R0S6	Salmonella_phage	93.4	6.1e-169
QAX67105.1|3714015_3714474_-	recombination protein NinB	NA	K7PKW7	Enterobacterial_phage	98.6	3.0e-79
QAX67106.1|3714529_3715906_-	replicative DNA helicase	NA	A0A192Y673	Salmonella_phage	99.3	4.8e-253
QAX67107.1|3715902_3716736_-	DNA replication protein	NA	A0A1R3Y5R9	Salmonella_virus	99.6	2.4e-151
QAX67108.1|3716728_3716875_-	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
QAX67109.1|3716909_3717191_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
QAX67110.1|3717301_3717517_-	XRE family transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
QAX67111.1|3717635_3718298_+	LexA family transcriptional regulator	NA	A0A0M4QWY1	Salmonella_phage	100.0	1.7e-126
QAX67112.1|3718649_3718952_+	regulator	NA	B8K1E6	Salmonella_phage	97.0	6.3e-49
QAX67113.1|3718964_3719552_-	superinfection exclusion protein B	NA	A0A0M4R594	Salmonella_phage	99.0	6.2e-85
QAX67114.1|3719744_3720245_+	HNH endonuclease	NA	A5H1L2	Xanthomonas_virus	44.5	1.2e-31
QAX67115.1|3720278_3720566_+	hypothetical protein	NA	Q76H36	Enterobacteria_phage	97.9	1.1e-47
QAX67116.1|3720885_3721059_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.6e-23
QAX67117.1|3721039_3721228_+	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
QAX67118.1|3721357_3722065_+	recombinase	NA	A0A1R3Y600	Salmonella_virus	98.7	2.9e-137
QAX67119.1|3722064_3722349_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
QAX67120.1|3722395_3722689_+	DUF2856 family protein	NA	A0A1R3Y5T7	Salmonella_virus	100.0	3.2e-50
QAX67121.1|3722699_3722870_+	DUF2737 family protein	NA	I6S642	Salmonella_phage	94.6	5.7e-23
QAX67122.1|3722866_3723391_+	hypothetical protein	NA	A0A1R3Y5S0	Salmonella_virus	96.9	4.2e-48
QAX67123.1|3723387_3724293_+	ead/Ea22-like family protein	NA	A0A0M5M1J9	Salmonella_phage	95.4	5.3e-51
QAX67124.1|3724294_3724513_+	DUF4014 domain-containing protein	NA	C6ZR28	Salmonella_phage	98.6	3.7e-35
QAX67125.1|3724516_3725188_+	DUF550 domain-containing protein	NA	A0A220NQU1	Salmonella_phage	64.6	5.6e-90
QAX67126.1|3725814_3725994_+	Eag protein	NA	A0A075B8F7	Enterobacteria_phage	100.0	1.9e-29
QAX67127.1|3726094_3726724_+	Eac protein	NA	A0A220NQT7	Salmonella_phage	96.7	7.3e-116
QAX67128.1|3726726_3727077_+	DNA-binding protein	NA	A0A075B8K2	Enterobacteria_phage	99.1	1.1e-60
QAX68397.1|3727448_3728117_+|integrase	site-specific integrase	integrase	A0A220NQU7	Salmonella_phage	100.0	8.0e-129
QAX67129.1|3728322_3729573_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
QAX67130.1|3729584_3730688_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
QAX67131.1|3730970_3732023_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.7e-112
3741237:3741253	attR	ACGCGAATTTCAATATC	NA	NA	NA	NA
>prophage 12
CP033226	Salmonella enterica subsp. enterica strain CFSA122 chromosome, complete genome	4990775	4571134	4615652	4990775	tRNA,tail,plate	Burkholderia_phage(42.86%)	46	NA	NA
QAX67867.1|4571134_4572133_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAX67868.1|4572220_4573531_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAX67869.1|4573777_4574293_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
QAX67870.1|4574391_4574601_-	CsbD family protein	NA	NA	NA	NA	NA
QAX68434.1|4574622_4574736_-	hypothetical protein	NA	NA	NA	NA	NA
QAX67871.1|4574732_4576058_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
QAX67872.1|4576236_4576845_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAX67873.1|4576953_4577322_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAX67874.1|4577492_4579913_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
QAX67875.1|4580011_4580884_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAX67876.1|4580897_4581395_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAX67877.1|4581575_4582493_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAX67878.1|4582656_4584015_-	maltoporin	NA	NA	NA	NA	NA
QAX67879.1|4584103_4585213_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAX67880.1|4585574_4586765_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAX67881.1|4586896_4588441_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAX67882.1|4588455_4589346_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAX67883.1|4589511_4589922_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAX67884.1|4590064_4592161_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAX67885.1|4592160_4592898_-	hypothetical protein	NA	NA	NA	NA	NA
QAX67886.1|4592894_4593533_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAX67887.1|4593596_4593839_-	outer membrane protein	NA	NA	NA	NA	NA
QAX67888.1|4594282_4595932_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAX67889.1|4596276_4597626_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAX67890.1|4597758_4598106_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAX67891.1|4598681_4598969_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QAX67892.1|4598971_4599577_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAX67893.1|4599589_4599904_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAX67894.1|4600063_4600519_+	hypothetical protein	NA	NA	NA	NA	NA
QAX67895.1|4600515_4600713_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAX67896.1|4600702_4602130_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
QAX67897.1|4602129_4602654_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAX67898.1|4602705_4603023_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAX67899.1|4602982_4603111_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAX67900.1|4603207_4605562_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	9.0e-66
QAX67901.1|4605561_4606515_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAX67902.1|4606514_4606724_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAX67903.1|4606711_4607755_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
QAX67904.1|4607764_4608487_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
QAX67905.1|4608814_4609177_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
QAX67906.1|4609173_4610103_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
QAX67907.1|4610102_4611650_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
QAX67908.1|4611813_4612173_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAX67909.1|4612163_4613279_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
QAX67910.1|4613271_4613904_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
QAX67911.1|4613906_4615652_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
>prophage 1
CP033224	Salmonella enterica subsp. enterica strain CFSA122 plasmid pCFSA122-1, complete sequence	181750	62860	153805	181750	integrase,transposase	Escherichia_phage(32.0%)	85	79458:79474	100041:100057
QAX63466.1|62860_64134_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	96.0	1.2e-170
QAX63467.1|64099_64375_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63468.1|64583_67040_+	DUF4165 domain-containing protein	NA	NA	NA	NA	NA
QAX63579.1|68180_69236_+	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	50.6	1.4e-82
QAX63469.1|69632_70208_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63470.1|71234_73655_-	DUF4165 domain-containing protein	NA	NA	NA	NA	NA
QAX63471.1|74119_74731_-	hypothetical protein	NA	A0A248SKW5	Klebsiella_phage	71.1	1.2e-09
QAX63472.1|74751_75015_-	hypothetical protein	NA	M9UXL5	Escherichia_phage	46.5	3.2e-09
QAX63473.1|75318_76023_+|transposase	IS6 family transposase IS15DI	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAX63474.1|76124_76604_+	transcriptional regulator	NA	NA	NA	NA	NA
79458:79474	attL	CTATTTGCAACAGTGCC	NA	NA	NA	NA
QAX63475.1|80801_80966_-	cupin domain-containing protein	NA	NA	NA	NA	NA
QAX63476.1|81146_81986_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
QAX63477.1|81915_82095_-	hypothetical protein	NA	NA	NA	NA	NA
QAX63478.1|82113_82317_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63479.1|82541_83246_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX63480.1|83435_84251_-	aminoglycoside O-phosphotransferase APH(3')-Ia	NA	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	100.0	6.1e-163
QAX63481.1|84401_85106_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
QAX63482.1|85336_86200_+	SDR family NAD(P)-dependent oxidoreductase	NA	W8CYX9	Bacillus_phage	31.0	2.5e-05
QAX63483.1|86237_86483_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63484.1|86951_87743_+	sulfonamide-resistant dihydropteroate synthase Sul3	NA	A0A0B5J4J5	Pandoravirus	26.5	1.2e-14
QAX63485.1|88597_88783_-	hypothetical protein	NA	NA	NA	NA	NA
QAX63486.1|88922_89255_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA	NA
QAX63487.1|89424_90216_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
QAX63488.1|90308_91568_-	chloramphenicol efflux MFS transporter CmlA1	NA	S4TR35	Salmonella_phage	31.7	4.8e-26
QAX63489.1|91829_92621_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
QAX63490.1|92678_93287_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
QAX63580.1|93382_94225_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA	NA
QAX63491.1|94391_95405_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
QAX63492.1|95343_95958_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
QAX63493.1|96083_96644_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
QAX63494.1|96646_99598_+|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.5	0.0e+00
QAX63581.1|99606_100008_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63495.1|100092_100797_-|transposase	IS6 family transposase IS1006	transposase	A0A077SL39	Escherichia_phage	85.8	1.9e-120
100041:100057	attR	GGCACTGTTGCAAATAG	NA	NA	NA	NA
QAX63496.1|101721_102606_+	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
QAX63497.1|102822_104037_+	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	1.2e-18
QAX63498.1|104064_104370_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAX63499.1|104481_105975_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAX63500.1|106005_106257_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63501.1|106150_106453_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
QAX63502.1|106539_107355_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
QAX63503.1|107444_108534_+|transposase	IS4 family transposase ISAba1	transposase	NA	NA	NA	NA
QAX63504.1|108731_109217_-	phenol hydroxylase	NA	NA	NA	NA	NA
QAX63505.1|111027_111780_+|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	44.7	2.4e-41
QAX63506.1|112201_113227_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA	NA
QAX63507.1|113213_113435_-	hypothetical protein	NA	NA	NA	NA	NA
QAX63508.1|113455_114232_-	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA	NA
QAX63509.1|114345_115050_+|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX63582.1|115193_115748_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
QAX63583.1|115878_116709_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
QAX63510.1|116846_117479_+	type B-3 chloramphenicol O-acetyltransferase CatB3	NA	A0A2R8FE91	Brazilian_cedratvirus	41.2	4.1e-26
QAX63511.1|117563_118016_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA	NA
QAX63512.1|118238_118586_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
QAX63513.1|118579_119419_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
QAX63514.1|119348_119528_-	hypothetical protein	NA	NA	NA	NA	NA
QAX63515.1|119546_119750_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63516.1|119867_120572_-|transposase	IS6 family transposase IS15DIV	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
QAX63517.1|120562_123442_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63518.1|123719_124232_+	signal peptidase I	NA	NA	NA	NA	NA
QAX63519.1|124218_125730_+	conjugal transfer protein	NA	NA	NA	NA	NA
QAX63584.1|125919_126930_+	plasmid transfer protein	NA	NA	NA	NA	NA
QAX63520.1|126948_130137_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
QAX63521.1|130165_131038_-	hypothetical protein	NA	NA	NA	NA	NA
QAX63522.1|131217_133002_+	ATP-dependent helicase	NA	S5M596	Bacillus_phage	26.7	3.5e-22
QAX63523.1|133396_134269_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63524.1|134326_134704_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63525.1|134764_135742_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63526.1|135799_136858_+	ATP-binding protein	NA	NA	NA	NA	NA
QAX63527.1|137226_138354_+	DUF3150 domain-containing protein	NA	NA	NA	NA	NA
QAX63528.1|138431_140444_+	VWA domain-containing protein	NA	NA	NA	NA	NA
QAX63529.1|140515_140737_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63530.1|140850_142083_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63531.1|142353_142875_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63532.1|142953_143832_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63533.1|143902_144838_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63534.1|144906_145827_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63535.1|145893_146832_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63536.1|147003_147960_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63537.1|148223_148499_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63538.1|148543_149134_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63539.1|149141_149399_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63540.1|149472_150009_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63541.1|150025_150472_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63542.1|150544_151525_+	DNA replication protein	NA	NA	NA	NA	NA
QAX63543.1|151534_152410_+	hypothetical protein	NA	NA	NA	NA	NA
QAX63544.1|152830_153805_+|transposase	IS30-like element ISApl1 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.1	3.0e-52
