The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035383	Klebsiella pneumoniae strain AP8555 chromosome, complete genome	5463931	1183983	1225343	5463931	protease,terminase,head,integrase,portal,holin,capsid,tail	Klebsiella_phage(41.67%)	54	1174091:1174107	1204028:1204044
1174091:1174107	attL	GGATCACGATTCTGCTG	NA	NA	NA	NA
QAV78088.1|1183983_1184892_-	DUF4760 domain-containing protein	NA	A0A1B5FPC5	Escherichia_phage	97.0	2.4e-168
QAV78089.1|1185379_1186555_-|integrase	site-specific integrase	integrase	I6PDJ1	Cronobacter_phage	92.2	3.2e-205
QAV78090.1|1186509_1186722_-	excisionase	NA	I6PBM8	Cronobacter_phage	73.1	1.3e-24
QAV78091.1|1186840_1187359_-	hypothetical protein	NA	A0A286S1S7	Klebsiella_phage	92.4	3.3e-90
QAV78092.1|1187399_1187840_-	hypothetical protein	NA	A0A286S1S2	Klebsiella_phage	83.6	1.5e-62
QAV78093.1|1187836_1188055_-	hypothetical protein	NA	A0A286S1P6	Klebsiella_phage	98.6	6.6e-32
QAV78094.1|1188026_1188281_-	hypothetical protein	NA	A0A286SGR4	Klebsiella_phage	92.9	2.7e-37
QAV78095.1|1188273_1188639_-	hypothetical protein	NA	A0A286S1Q6	Klebsiella_phage	95.9	6.4e-56
QAV78096.1|1188639_1188864_-	hypothetical protein	NA	NA	NA	NA	NA
QAV78097.1|1189034_1189229_-	hypothetical protein	NA	A0A286S1P8	Klebsiella_phage	50.0	4.5e-08
QAV78098.1|1189218_1189527_-	hypothetical protein	NA	A0A286S1T9	Klebsiella_phage	56.3	3.9e-22
QAV78099.1|1189685_1190393_-	helix-turn-helix transcriptional regulator	NA	G8C7U1	Escherichia_phage	50.2	6.9e-54
QAV78100.1|1190517_1190745_+	helix-turn-helix domain-containing protein	NA	A0A0N7C1T6	Escherichia_phage	60.0	1.5e-15
QAV78101.1|1190820_1191009_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
QAV78102.1|1191005_1191836_+	helix-turn-helix domain-containing protein	NA	A5LH71	Enterobacteria_phage	67.3	2.0e-81
QAV81902.1|1191847_1192726_+	cell division protein ZapE	NA	Q8W641	Enterobacteria_phage	63.5	3.2e-85
QAV78103.1|1192722_1194102_+	replicative DNA helicase	NA	Q8W640	Enterobacteria_phage	64.5	6.9e-159
QAV78104.1|1194088_1194457_+	RusA family crossover junction endodeoxyribonuclease	NA	G8C7V6	Escherichia_phage	60.3	2.1e-38
QAV78105.1|1194453_1195269_+	antitermination protein	NA	A0A286N2Q2	Klebsiella_phage	77.5	1.7e-112
QAV78106.1|1195464_1195710_+	hypothetical protein	NA	NA	NA	NA	NA
QAV81903.1|1195995_1196295_+|holin	holin	holin	A0A286N2Q5	Klebsiella_phage	100.0	4.5e-47
QAV78107.1|1196291_1196831_+	hypothetical protein	NA	A0A286N2Q6	Klebsiella_phage	97.8	7.4e-101
QAV78108.1|1196827_1197175_+	hypothetical protein	NA	A0A286N2Q7	Klebsiella_phage	81.7	3.6e-40
QAV78109.1|1197171_1197447_+	hypothetical protein	NA	A0A286N2Q8	Klebsiella_phage	87.9	1.7e-05
QAV81904.1|1197397_1197595_+	hypothetical protein	NA	A0A286SGR9	Klebsiella_phage	91.2	3.9e-23
QAV78110.1|1197684_1198026_+	hypothetical protein	NA	NA	NA	NA	NA
QAV78111.1|1198168_1198414_+	DUF2560 family protein	NA	A0A286N2R1	Klebsiella_phage	98.8	1.4e-35
QAV78112.1|1198512_1198947_+	hypothetical protein	NA	NA	NA	NA	NA
QAV78113.1|1199070_1199421_+	HNH endonuclease	NA	K7PHK9	Enterobacteria_phage	77.6	6.6e-50
QAV78114.1|1199577_1200075_+|terminase	phage terminase small subunit P27 family	terminase	K7PHI2	Enterobacteria_phage	71.3	7.4e-63
QAV78115.1|1200078_1201830_+|terminase	terminase large subunit	terminase	A0A1P8DTK0	Proteus_phage	72.2	6.7e-252
QAV78116.1|1201977_1203204_+|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	85.3	2.5e-208
QAV78117.1|1203196_1203796_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	82.0	5.0e-90
QAV78118.1|1203805_1205044_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	69.2	1.2e-157
1204028:1204044	attR	CAGCAGAATCGTGATCC	NA	NA	NA	NA
QAV78119.1|1205121_1205439_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1W6JNZ5	Morganella_phage	52.0	4.8e-23
QAV78120.1|1205447_1205786_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JHK5	uncultured_Caudovirales_phage	67.9	3.3e-38
QAV78121.1|1205782_1206232_+	HK97 gp10 family phage protein	NA	Q9MCS9	Enterobacteria_phage	82.6	6.7e-63
QAV78122.1|1206228_1206576_+	DUF3168 domain-containing protein	NA	K7PKL6	Enterobacterial_phage	63.7	2.8e-32
QAV78123.1|1206632_1207337_+	immunoglobulin domain-containing protein	NA	K7PHL2	Enterobacterial_phage	66.1	1.6e-79
QAV78124.1|1207367_1207772_+|tail	phage tail protein	tail	Q9MCS5	Enterobacteria_phage	56.2	5.0e-33
QAV78125.1|1207774_1208080_+	DUF4035 domain-containing protein	NA	Q9MCS5	Enterobacteria_phage	66.7	9.5e-29
QAV78126.1|1208153_1208387_+	hypothetical protein	NA	K7PH16	Enterobacteria_phage	47.2	1.9e-08
QAV78127.1|1208446_1211836_+|tail	phage tail tape measure protein	tail	A0A0P0ZCJ4	Stx2-converting_phage	60.5	0.0e+00
QAV78128.1|1211856_1212330_+	hypothetical protein	NA	A0A286S298	Klebsiella_phage	62.1	1.4e-55
QAV78129.1|1212316_1212793_+	DUF1833 domain-containing protein	NA	A0A286S2B1	Klebsiella_phage	65.8	4.8e-51
QAV78130.1|1212805_1213186_+	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	84.1	5.3e-61
QAV78131.1|1213182_1216260_+	kinase	NA	A0A286S259	Klebsiella_phage	62.2	0.0e+00
QAV81905.1|1216356_1219491_+	SGNH/GDSL hydrolase family protein	NA	A0A1I9SEN3	Klebsiella_phage	32.1	5.0e-104
QAV78132.1|1219588_1220398_-	hypothetical protein	NA	NA	NA	NA	NA
QAV78133.1|1220397_1222287_-	hypothetical protein	NA	A0A2H4N7A3	Pectobacterium_phage	53.4	2.5e-151
QAV78134.1|1222378_1222927_+	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	96.7	2.9e-92
QAV78135.1|1223010_1223427_+	hypothetical protein	NA	K7P834	Enterobacteria_phage	46.1	4.2e-27
QAV78136.1|1223834_1224083_-	DinI family protein	NA	S5MQI1	Escherichia_phage	70.4	3.6e-26
QAV78137.1|1224860_1225343_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	2.3e-29
>prophage 2
CP035383	Klebsiella pneumoniae strain AP8555 chromosome, complete genome	5463931	1340489	1402508	5463931	transposase,terminase,holin,capsid,tail	Salmonella_phage(37.25%)	68	NA	NA
QAV78236.1|1340489_1341956_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.7	1.2e-87
QAV78237.1|1342023_1343601_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA	NA
QAV78238.1|1343792_1345043_+	DUF4102 domain-containing protein	NA	A0A1X9TCT6	Enterobacter_phage	84.9	8.9e-206
QAV78239.1|1345059_1345251_-	hypothetical protein	NA	NA	NA	NA	NA
QAV78240.1|1345247_1345841_-	adenine methylase	NA	T1SA14	Salmonella_phage	92.9	3.3e-110
QAV78241.1|1345837_1345996_-	DUF1317 family protein	NA	T1SAR0	Salmonella_phage	78.8	2.5e-17
QAV78242.1|1345988_1346282_-	PerC family transcriptional regulator	NA	T1S9J5	Salmonella_phage	71.1	8.9e-32
QAV78243.1|1346391_1346640_-	AlpA family phage regulatory protein	NA	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	78.0	2.8e-31
QAV78244.1|1346686_1347568_-	recombinase RecT	NA	T1SBJ5	Salmonella_phage	84.6	1.4e-136
QAV78245.1|1347564_1348386_-	exodeoxyribonuclease VIII	NA	A0A193GYK2	Enterobacter_phage	80.2	2.8e-131
QAV81909.1|1348385_1348577_-	hypothetical protein	NA	A0A1L2C975	Pseudomonas_phage	52.6	2.1e-05
QAV78246.1|1348636_1348936_-	hypothetical protein	NA	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	54.5	2.1e-20
QAV78247.1|1349302_1349884_-	XRE family transcriptional regulator	NA	Q858D7	Salmonella_phage	64.8	4.2e-65
QAV78248.1|1350037_1350271_+	hypothetical protein	NA	T1SAR5	Salmonella_phage	66.2	9.2e-24
QAV78249.1|1350417_1350621_+	hypothetical protein	NA	A0A193GYW4	Enterobacter_phage	78.3	2.8e-21
QAV78250.1|1350617_1351280_+	serine/threonine protein phosphatase	NA	K7P6H8	Enterobacteria_phage	61.4	1.5e-82
QAV78251.1|1351279_1352041_+	DNA replication domain protein	NA	T1SA92	Salmonella_phage	57.4	3.4e-67
QAV78252.1|1352166_1352511_+	DUF1064 domain-containing protein	NA	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	85.1	6.9e-52
QAV78253.1|1352703_1353165_+	hypothetical protein	NA	R9TME7	Aeromonas_phage	35.5	2.7e-06
QAV78254.1|1353157_1353838_+	DNA cytosine methyltransferase	NA	A0A0H5AU88	Pseudomonas_phage	58.3	9.2e-72
QAV78255.1|1354308_1354521_+	hypothetical protein	NA	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	45.5	8.1e-11
QAV78256.1|1355128_1355413_+	hypothetical protein	NA	A0A0N7KZ94	Stx2-converting_phage	75.5	2.5e-15
QAV81910.1|1355412_1355601_+	hypothetical protein	NA	R9TNE4	Aeromonas_phage	76.7	9.4e-19
QAV78257.1|1355593_1355932_+	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	80.0	1.8e-44
QAV78258.1|1356007_1356337_+	hypothetical protein	NA	K7PGV5	Enterobacterial_phage	55.1	1.9e-27
QAV78259.1|1356394_1356979_+|terminase	terminase small subunit	terminase	T1SBI8	Salmonella_phage	88.1	8.4e-90
QAV78260.1|1356975_1358451_+|terminase	terminase	terminase	Q858H3	Salmonella_phage	93.7	1.5e-281
QAV78261.1|1358447_1359239_-	hypothetical protein	NA	NA	NA	NA	NA
QAV78262.1|1359416_1359662_-	hypothetical protein	NA	NA	NA	NA	NA
QAV78263.1|1360259_1360463_+	hypothetical protein	NA	NA	NA	NA	NA
QAV78264.1|1360466_1362146_+|tail	phage tail protein	tail	T1S9Z7	Salmonella_phage	59.3	3.6e-194
QAV78265.1|1362142_1362448_+	hypothetical protein	NA	Q2A090	Sodalis_phage	51.3	1.1e-16
QAV78266.1|1362729_1363128_+	peptidase	NA	T1SAP9	Salmonella_phage	59.5	5.6e-37
QAV78267.1|1363140_1364148_+|capsid	phage capsid protein	capsid	T1S9H9	Salmonella_phage	92.8	2.1e-181
QAV78268.1|1364158_1364551_+	hypothetical protein	NA	T1SA71	Salmonella_phage	89.9	1.5e-55
QAV78269.1|1364543_1364822_+	hypothetical protein	NA	T1SA01	Salmonella_phage	58.9	1.1e-20
QAV78270.1|1364870_1365482_+	hypothetical protein	NA	T1SAQ2	Salmonella_phage	48.8	9.2e-47
QAV78271.1|1365481_1367959_+	hypothetical protein	NA	G9L6D0	Escherichia_phage	56.8	7.3e-268
QAV78272.1|1367960_1368431_+	hypothetical protein	NA	Q858G2	Salmonella_phage	55.9	6.6e-45
QAV78273.1|1368423_1368921_+	hypothetical protein	NA	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	42.9	8.9e-24
QAV78274.1|1368933_1371432_+	hypothetical protein	NA	A0A193GYI3	Enterobacter_phage	61.3	1.5e-289
QAV78275.1|1371428_1373234_+	hypothetical protein	NA	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	73.3	1.7e-237
QAV78276.1|1373237_1375712_+	hypothetical protein	NA	A0A0F6TK45	Escherichia_coli_O157_typing_phage	85.7	0.0e+00
QAV78277.1|1375907_1376204_+	hypothetical protein	NA	A0A2R9YJP3	Escherichia_phage	93.8	1.7e-46
QAV78278.1|1376246_1376399_-	transmembrane anchored protein	NA	G9L6D9	Escherichia_phage	81.6	9.6e-14
QAV78279.1|1376490_1377036_-	DUF2335 domain-containing protein	NA	NA	NA	NA	NA
QAV78280.1|1376959_1377295_-	hypothetical protein	NA	NA	NA	NA	NA
QAV78281.1|1377423_1377720_-	hypothetical protein	NA	T1SA06	Salmonella_phage	65.5	8.1e-25
QAV78282.1|1380212_1380620_+	hypothetical protein	NA	T1SA79	Salmonella_phage	82.7	1.4e-54
QAV78283.1|1380606_1380903_+|holin	phage holin family protein	holin	A0A193GYK3	Enterobacter_phage	77.6	2.1e-33
QAV78284.1|1380899_1381379_+	TIGR02594 family protein	NA	A0A222YWL8	Escherichia_phage	68.8	2.1e-62
QAV78285.1|1381375_1381876_+	DUF2514 domain-containing protein	NA	Q858E9	Salmonella_phage	78.8	5.9e-60
QAV78286.1|1382045_1383914_-	phosphatase	NA	A0A2P0VMN7	Tetraselmis_virus	22.6	2.6e-07
QAV78287.1|1383897_1385076_-	anaerobic sulfatase maturase	NA	NA	NA	NA	NA
QAV78288.1|1385369_1386602_-	MFS transporter	NA	NA	NA	NA	NA
QAV78289.1|1386699_1387587_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAV78290.1|1387683_1387875_-	DUF2633 family protein	NA	G9L6F2	Escherichia_phage	79.3	3.3e-19
QAV78291.1|1388227_1390456_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA	NA
QAV78292.1|1390509_1392042_-	exopolyphosphatase	NA	NA	NA	NA	NA
QAV78293.1|1392045_1394106_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
QAV78294.1|1394286_1394928_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	41.1	9.0e-29
QAV78295.1|1394924_1395962_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.5	8.2e-72
QAV78296.1|1396225_1397119_+	beta-glucoside kinase	NA	NA	NA	NA	NA
QAV78297.1|1397128_1398562_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
QAV78298.1|1398779_1399406_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
QAV78299.1|1399501_1400788_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	38.1	1.9e-65
QAV78300.1|1400886_1401588_+	DnaA inactivator Hda	NA	NA	NA	NA	NA
QAV78301.1|1401584_1402508_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	58.8	2.7e-74
>prophage 3
CP035383	Klebsiella pneumoniae strain AP8555 chromosome, complete genome	5463931	1717635	1724540	5463931		Planktothrix_phage(33.33%)	6	NA	NA
QAV78574.1|1717635_1718499_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.5	5.7e-10
QAV78575.1|1718509_1719283_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.7	3.9e-26
QAV81924.1|1719523_1720417_-	lipid kinase YegS	NA	A0A1V0SBJ0	Catovirus	29.8	6.1e-15
QAV78576.1|1720662_1722024_-	U32 family peptidase	NA	Q6DW11	Phage_TP	94.8	1.8e-207
QAV78577.1|1722342_1723065_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.2	8.3e-31
QAV78578.1|1723061_1724540_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.3	8.5e-30
>prophage 4
CP035383	Klebsiella pneumoniae strain AP8555 chromosome, complete genome	5463931	2846334	2857213	5463931		Escherichia_phage(85.71%)	8	NA	NA
QAV79559.1|2846334_2849442_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.6	0.0e+00
QAV79560.1|2849496_2850762_+	MFS transporter	NA	NA	NA	NA	NA
QAV79561.1|2850792_2851881_-	chromosome segregation protein SMC	NA	A0A077SLJ9	Escherichia_phage	99.7	1.0e-210
QAV79562.1|2851967_2852228_-	hypothetical protein	NA	A0A077SK33	Escherichia_phage	96.5	4.6e-40
QAV79563.1|2852525_2853386_+	class A broad-spectrum beta-lactamase SHV-11	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
QAV79564.1|2853406_2854168_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
QAV79565.1|2854428_2855331_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
QAV79566.1|2856592_2857213_+	aldolase	NA	A0A077SK32	Escherichia_phage	100.0	8.0e-115
>prophage 5
CP035383	Klebsiella pneumoniae strain AP8555 chromosome, complete genome	5463931	3250646	3345366	5463931	transposase,terminase,head,integrase,portal,holin,capsid,tRNA,tail	Klebsiella_phage(47.73%)	104	3243179:3243196	3353515:3353532
3243179:3243196	attL	ACGCCAAACCCCACCGTC	NA	NA	NA	NA
QAV79920.1|3250646_3251147_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
QAV79921.1|3251264_3251711_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
QAV82003.1|3251694_3252486_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAV79922.1|3252587_3253772_+	MFS transporter	NA	NA	NA	NA	NA
QAV79923.1|3253803_3254496_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79924.1|3254641_3255151_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
QAV82004.1|3255137_3255494_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
QAV79925.1|3255483_3255723_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
QAV79926.1|3256023_3257037_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	29.0	1.9e-12
QAV79927.1|3257094_3257196_+	hypothetical protein	NA	NA	NA	NA	NA
QAV82005.1|3257195_3257270_+	protein YoaJ	NA	NA	NA	NA	NA
QAV79928.1|3257387_3257513_+	hypothetical protein	NA	NA	NA	NA	NA
QAV79929.1|3257571_3257835_-	DUF2534 family protein	NA	NA	NA	NA	NA
QAV79930.1|3257965_3258604_-	leucine efflux protein LeuE	NA	NA	NA	NA	NA
QAV79931.1|3258693_3259608_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	50.4	1.1e-72
QAV79932.1|3259823_3260015_+	hypothetical protein	NA	NA	NA	NA	NA
QAV79933.1|3260269_3261313_-	type II asparaginase	NA	NA	NA	NA	NA
QAV79934.1|3262896_3264681_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.1	5.8e-17
QAV79935.1|3264687_3265578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAV79936.1|3265698_3267207_+	UbiD family decarboxylase	NA	NA	NA	NA	NA
QAV79937.1|3267517_3268204_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QAV79938.1|3268601_3268781_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79939.1|3268820_3269453_-	DNA-binding protein	NA	NA	NA	NA	NA
QAV79940.1|3270019_3270217_+	hypothetical protein	NA	NA	NA	NA	NA
QAV79941.1|3270332_3271343_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
QAV79942.1|3271339_3272746_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
QAV79943.1|3272801_3273689_-	manganese catalase family protein	NA	NA	NA	NA	NA
QAV79944.1|3273705_3274212_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
QAV79945.1|3274238_3274733_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
QAV79946.1|3274823_3275009_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA	NA
QAV79947.1|3275631_3276825_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA	NA
QAV79948.1|3276937_3277165_+	DUF1272 domain-containing protein	NA	NA	NA	NA	NA
QAV79949.1|3277185_3277371_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79950.1|3277614_3277938_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QAV79951.1|3277930_3278323_+	amino acid-binding protein	NA	NA	NA	NA	NA
QAV79952.1|3278319_3279033_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QAV79953.1|3279305_3279458_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.0	3.8e-18
QAV79954.1|3279777_3280101_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79955.1|3280106_3280799_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QAV79956.1|3281153_3282212_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	31.7	2.1e-14
QAV79957.1|3282634_3284062_-|tail	tail fiber domain-containing protein	tail	A0A0P0IDN1	Klebsiella_phage	55.5	3.0e-101
QAV79958.1|3284130_3296835_-	DUF1983 domain-containing protein	NA	Q6UAW1	Klebsiella_phage	46.9	0.0e+00
QAV79959.1|3296897_3297509_-|tail	tail assembly protein	tail	Q6UAW2	Klebsiella_phage	72.5	5.3e-71
QAV79960.1|3297524_3297875_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79961.1|3297906_3298617_-	peptidase P60	NA	Q6UAW4	Klebsiella_phage	89.8	1.4e-136
QAV79962.1|3298618_3299374_-|tail	phage minor tail protein L	tail	Q6UAW5	Klebsiella_phage	81.3	1.2e-125
QAV79963.1|3299370_3299709_-|tail	phage tail protein	tail	Q6UAW6	Klebsiella_phage	89.3	8.3e-58
QAV79964.1|3299708_3303044_-|tail	phage tail tape measure protein	tail	Q6UAW7	Klebsiella_phage	87.6	0.0e+00
QAV82006.1|3303043_3303256_-	hypothetical protein	NA	Q6UAW9	Klebsiella_phage	87.5	4.1e-31
QAV79965.1|3303276_3303642_-|tail	phage tail protein	tail	Q6UAW8	Klebsiella_phage	89.3	1.6e-51
QAV79966.1|3303699_3304161_-|tail	phage tail protein	tail	Q6UAX0	Klebsiella_phage	83.7	7.8e-67
QAV79967.1|3304192_3304594_-	hypothetical protein	NA	Q6UAX1	Klebsiella_phage	94.0	1.7e-62
QAV79968.1|3304590_3304980_-	hypothetical protein	NA	Q6UAX2	Klebsiella_phage	85.3	1.1e-56
QAV79969.1|3304960_3305299_-|head,tail	head-tail adaptor protein	head,tail	Q6UAX3	Klebsiella_phage	91.1	5.6e-54
QAV79970.1|3305295_3305613_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q6UAX4	Klebsiella_phage	88.8	2.6e-45
QAV79971.1|3305593_3305854_-	hypothetical protein	NA	Q6UAX5	Klebsiella_phage	65.1	5.1e-23
QAV79972.1|3305912_3307199_-|capsid	phage major capsid protein	capsid	Q6UAX6	Klebsiella_phage	89.3	4.4e-216
QAV79973.1|3307276_3308197_-	S49 family peptidase	NA	Q6UAX7	Klebsiella_phage	88.2	9.6e-149
QAV79974.1|3308233_3309493_-|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	90.0	3.1e-222
QAV79975.1|3309492_3309672_-	hypothetical protein	NA	Q6UAX9	Klebsiella_phage	57.6	4.0e-11
QAV79976.1|3309665_3311387_-|terminase	terminase large subunit	terminase	Q7Y413	Yersinia_phage	57.4	1.1e-190
QAV79977.1|3311386_3311821_-|terminase	phage terminase small subunit P27 family	terminase	A0A1J0GV10	Halomonas_phage	61.9	9.4e-30
QAV79978.1|3312069_3312501_-	hypothetical protein	NA	Q6UAS0	Klebsiella_phage	61.6	1.8e-41
QAV79979.1|3312497_3312821_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79980.1|3312772_3313135_-	HNH endonuclease	NA	Q6UAS2	Klebsiella_phage	82.5	1.3e-56
QAV79981.1|3313461_3313686_+	hypothetical protein	NA	NA	NA	NA	NA
QAV79982.1|3313724_3314162_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79983.1|3315110_3315461_-	hypothetical protein	NA	A0A0K2FIW3	Enterobacter_phage	37.7	6.0e-11
QAV79984.1|3315457_3315955_-	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	86.4	4.3e-79
QAV79985.1|3315954_3316170_-|holin	holin	holin	A5LH82	Enterobacteria_phage	87.3	1.0e-29
QAV82007.1|3317181_3317622_+	hypothetical protein	NA	NA	NA	NA	NA
QAV79986.1|3317626_3318496_+	hypothetical protein	NA	NA	NA	NA	NA
QAV79987.1|3318524_3318869_-	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	85.0	1.0e-55
QAV79988.1|3318881_3319913_-	DUF968 domain-containing protein	NA	S5MW46	Escherichia_phage	49.3	1.8e-95
QAV79989.1|3319912_3320116_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79990.1|3320112_3320505_-	DNA-binding protein	NA	K7PHB4	Enterobacterial_phage	36.6	6.1e-12
QAV79991.1|3320545_3320836_-	hypothetical protein	NA	H6WRY6	Salmonella_phage	56.9	6.1e-17
QAV79992.1|3320847_3321081_-	DinI family protein	NA	K7PM44	Enterobacteria_phage	71.1	1.7e-25
QAV79993.1|3321735_3323097_+	hypothetical protein	NA	NA	NA	NA	NA
QAV79994.1|3323440_3325204_-	EAL domain-containing protein	NA	NA	NA	NA	NA
QAV79995.1|3325516_3325957_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
QAV79996.1|3325970_3326435_-	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	68.9	1.9e-60
QAV79997.1|3326427_3327411_-	hypothetical protein	NA	A0A0U2RT81	Escherichia_phage	56.4	3.3e-46
QAV79998.1|3327462_3328017_-	hypothetical protein	NA	NA	NA	NA	NA
QAV79999.1|3328019_3328235_-	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	57.5	2.0e-17
QAV80000.1|3328336_3328726_+	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	60.2	6.7e-35
QAV80001.1|3329340_3329559_+	hypothetical protein	NA	NA	NA	NA	NA
QAV80002.1|3329568_3329763_+	DUF1482 family protein	NA	NA	NA	NA	NA
QAV80003.1|3329805_3330150_+	transcriptional regulator	NA	NA	NA	NA	NA
QAV80004.1|3330291_3332430_+	exonuclease	NA	S4TNL0	Salmonella_phage	42.9	3.3e-99
QAV80005.1|3332482_3332728_+	excisionase	NA	NA	NA	NA	NA
QAV80006.1|3332708_3333836_+|integrase	integrase	integrase	O21925	Phage_21	58.4	3.3e-119
QAV80007.1|3333953_3335204_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
QAV80008.1|3335444_3336095_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
QAV80009.1|3336111_3336570_+	NUDIX hydrolase	NA	NA	NA	NA	NA
QAV80010.1|3336626_3337733_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QAV80011.1|3337787_3338429_+	lysogenization regulator HflD	NA	NA	NA	NA	NA
QAV80012.1|3338432_3339803_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	1.2e-107
QAV80013.1|3339857_3340220_-	cupin domain-containing protein	NA	NA	NA	NA	NA
QAV80014.1|3340303_3341110_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAV80015.1|3341392_3342064_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
QAV80016.1|3342063_3343530_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
QAV80017.1|3343615_3344737_+	cupin domain-containing protein	NA	NA	NA	NA	NA
QAV80018.1|3344874_3345366_-|transposase	transposase	transposase	NA	NA	NA	NA
3353515:3353532	attR	ACGCCAAACCCCACCGTC	NA	NA	NA	NA
>prophage 6
CP035383	Klebsiella pneumoniae strain AP8555 chromosome, complete genome	5463931	3594419	3603883	5463931	protease,tRNA	Brazilian_cedratvirus(16.67%)	8	NA	NA
QAV80227.1|3594419_3596141_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A2R8FG22	Brazilian_cedratvirus	34.3	1.5e-14
QAV80228.1|3596185_3596887_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
QAV80229.1|3597240_3597459_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
QAV80230.1|3597579_3599859_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	1.6e-165
QAV80231.1|3599889_3600207_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	2.0e-13
QAV80232.1|3600532_3600754_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	1.3e-16
QAV80233.1|3600830_3602771_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.5	1.9e-37
QAV80234.1|3602767_3603883_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	52.7	1.3e-06
>prophage 1
CP035384	Klebsiella pneumoniae strain AP8555 plasmid pAP855, complete sequence	357837	52381	59480	357837	integrase	Escherichia_phage(50.0%)	8	42852:42865	56212:56225
42852:42865	attL	TATTTCCCGTTTCG	NA	NA	NA	NA
QAV82152.1|52381_53176_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	88.7	5.5e-52
QAV82432.1|53671_53851_-	Par-like protein	NA	NA	NA	NA	NA
QAV82433.1|53970_54597_-	cobyrinic acid ac-diamide synthase	NA	A0A222YXS3	Escherichia_phage	43.6	2.9e-40
QAV82153.1|54731_54917_-	hypothetical protein	NA	NA	NA	NA	NA
QAV82154.1|55285_56161_-	RepB family plasmid replication initiator protein	NA	Q71TL8	Escherichia_phage	56.4	5.6e-82
QAV82155.1|56572_57844_-	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	64.0	5.2e-153
56212:56225	attR	TATTTCCCGTTTCG	NA	NA	NA	NA
QAV82156.1|57843_58275_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	53.3	2.1e-29
QAV82157.1|58508_59480_+	StbA family protein	NA	A0A222YXF2	Escherichia_phage	46.8	1.1e-73
>prophage 2
CP035384	Klebsiella pneumoniae strain AP8555 plasmid pAP855, complete sequence	357837	349738	357108	357837	transposase	Stx2-converting_phage(28.57%)	7	NA	NA
QAV82420.1|349738_350707_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	28.8	7.3e-14
QAV82421.1|350975_352568_-|transposase	IS66-like element ISKox1 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	61.8	3.2e-176
QAV82422.1|352598_352949_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	63.8	5.2e-39
QAV82423.1|352945_353386_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	53.8	4.4e-19
QAV82424.1|353582_353765_+	DUF4113 domain-containing protein	NA	A0A1W6JNT0	Morganella_phage	57.1	9.1e-11
QAV82425.1|354970_355942_-	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	86.9	7.0e-150
QAV82426.1|355941_357108_-	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	97.4	2.0e-223
