assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004118915.1_ASM411891v1	CP035366	Escherichia coli O157:H7 strain C1-057 chromosome, complete genome	1	72803-72937	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|190aa|down_7|CP035366.1_81978_82548_+	NA|274aa|up_9|CP035366.1_56578_57400_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|CP035366.1_57396_58386_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|CP035366.1_58385_59672_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|CP035366.1_59724_62079_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|CP035366.1_62333_63149_+	PRK09430, djlA, co-chaperone DjlA	NA|405aa|up_4|CP035366.1_63875_65089_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|220aa|up_3|CP035366.1_65926_66586_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|CP035366.1_66597_69504_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|CP035366.1_69667_72019_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|CP035366.1_72093_72789_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|CP035366.1_72988_74491_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|CP035366.1_74501_76202_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|CP035366.1_76540_77419_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|CP035366.1_77504_78269_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|CP035366.1_78355_79054_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|CP035366.1_79037_80648_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|CP035366.1_80623_81607_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|CP035366.1_81978_82548_+	NA	NA|553aa|down_8|CP035366.1_82776_84435_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|CP035366.1_84523_84655_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCA_004118915.1_ASM411891v1	CP035366	Escherichia coli O157:H7 strain C1-057 chromosome, complete genome	3	3576120-3576332	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|CP035366.1_3567932_3568694_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|CP035366.1_3568674_3569724_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|CP035366.1_3569720_3570200_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|CP035366.1_3570199_3570910_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|CP035366.1_3570928_3571240_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|CP035366.1_3571433_3571757_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|CP035366.1_3571806_3572412_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|CP035366.1_3572411_3573839_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|CP035366.1_3573840_3574749_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|CP035366.1_3575000_3576038_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|CP035366.1_3576427_3576721_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|CP035366.1_3576717_3577641_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|CP035366.1_3577637_3578288_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|CP035366.1_3578269_3579016_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|CP035366.1_3579026_3580082_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|CP035366.1_3580093_3580630_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|CP035366.1_3580626_3582189_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|CP035366.1_3582286_3584986_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|CP035366.1_3585177_3585330_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|CP035366.1_3585593_3586328_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCA_004118915.1_ASM411891v1	CP035366	Escherichia coli O157:H7 strain C1-057 chromosome, complete genome	4	3601962-3602050	3	CRISPRCasFinder	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|600aa|up_9|CP035366.1_3588113_3589913_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_8|CP035366.1_3590228_3590594_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|CP035366.1_3590671_3591943_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|CP035366.1_3591933_3592194_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|CP035366.1_3592210_3592786_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|CP035366.1_3593790_3594570_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|CP035366.1_3595977_3597432_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|CP035366.1_3597501_3598287_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|CP035366.1_3598605_3599883_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|CP035366.1_3599909_3601388_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|CP035366.1_3602389_3603061_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|CP035366.1_3603215_3603836_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|CP035366.1_3603849_3604524_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|CP035366.1_3604757_3605906_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|CP035366.1_3605902_3606817_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|CP035366.1_3606876_3608175_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|CP035366.1_3608262_3609900_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|CP035366.1_3610127_3610919_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|CP035366.1_3610989_3611325_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|CP035366.1_3611324_3611573_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCA_004118915.1_ASM411891v1	CP035366	Escherichia coli O157:H7 strain C1-057 chromosome, complete genome	5	5292152-5292301	4	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|585aa|up_6|CP035366.1_5283299_5285054_+,NA|245aa|down_7|CP035366.1_5301378_5302113_+,NA|88aa|down_9|CP035366.1_5303404_5303668_-	NA|238aa|up_9|CP035366.1_5281202_5281916_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|CP035366.1_5281986_5282580_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|CP035366.1_5282724_5283177_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|585aa|up_6|CP035366.1_5283299_5285054_+	NA	NA|335aa|up_5|CP035366.1_5285110_5286115_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|CP035366.1_5286276_5286693_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|CP035366.1_5286738_5287242_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|CP035366.1_5287434_5288631_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|CP035366.1_5288685_5291541_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|CP035366.1_5291540_5291984_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|CP035366.1_5292337_5293849_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|CP035366.1_5294115_5295216_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|CP035366.1_5295215_5296298_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|CP035366.1_5296458_5297961_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|CP035366.1_5298090_5299110_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|425aa|down_5|CP035366.1_5299554_5300829_+	PRK09692, PRK09692, integrase; Provisional	NA|102aa|down_6|CP035366.1_5300996_5301302_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|245aa|down_7|CP035366.1_5301378_5302113_+	NA	NA|415aa|down_8|CP035366.1_5302150_5303395_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|88aa|down_9|CP035366.1_5303404_5303668_-	NA
