The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP030053	Bradyrhizobium sp. CCBAU 51670 chromosome, complete genome	7158886	609111	615741	7158886		uncultured_virus(33.33%)	7	NA	NA
QAU44423.1|609111_610068_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	32.4	2.5e-30
QAU44424.1|610957_611416_-	heat-shock protein	NA	A0A2H4N7P1	Lake_Baikal_phage	41.5	1.0e-18
QAU44425.1|611847_612162_+	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	48.9	2.6e-21
QAU44426.1|612197_613817_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.7	6.8e-174
QAU44427.1|613904_614243_+	hypothetical protein	NA	NA	NA	NA	NA
QAU44428.1|614708_615167_+	heat-shock protein	NA	A0A1B1IW69	uncultured_Mediterranean_phage	40.2	8.2e-24
QAU44429.1|615249_615741_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	34.6	1.1e-13
>prophage 2
CP030053	Bradyrhizobium sp. CCBAU 51670 chromosome, complete genome	7158886	3537865	3546957	7158886	tRNA	uncultured_Mediterranean_phage(87.5%)	11	NA	NA
QAU46910.1|3537865_3538705_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.3	7.4e-31
QAU46911.1|3538705_3539479_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	50.3	1.9e-44
QAU46912.1|3539644_3539878_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	7.1e-08
QAU46913.1|3539966_3540497_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
QAU46914.1|3540493_3541309_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.0	1.2e-54
QAU46915.1|3541504_3542836_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.2	7.7e-99
QAU46916.1|3542932_3543298_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50190.1|3543316_3544198_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.3	6.6e-38
QAU46917.1|3544201_3544573_-	response regulator	NA	NA	NA	NA	NA
QAU46918.1|3544814_3545465_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	2.4e-29
QAU46919.1|3545574_3546957_+	peptidoglycan-binding LysM	NA	Q8SBN9	Clostridium_phage	40.9	3.1e-18
>prophage 3
CP030053	Bradyrhizobium sp. CCBAU 51670 chromosome, complete genome	7158886	5111860	5121034	7158886		Escherichia_phage(42.86%)	8	NA	NA
QAU48201.1|5111860_5113555_-	chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	51.1	1.2e-35
QAU48202.1|5113787_5115479_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.1	5.2e-15
QAU48203.1|5115646_5116921_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.0	7.5e-75
QAU48204.1|5116917_5117700_-	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
QAU48205.1|5117713_5118631_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	49.2	1.1e-67
QAU50342.1|5118733_5119435_+	aldolase	NA	A0A077SK32	Escherichia_phage	48.3	4.0e-46
QAU48206.1|5119614_5120319_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	7.6e-13
QAU48207.1|5120302_5121034_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.8	1.1e-11
>prophage 1
CP030054	Bradyrhizobium sp. CCBAU 51670 plasmid unnamed1, complete sequence	979291	151635	158653	979291		Pseudomonas_phage(42.86%)	7	NA	NA
QAU50604.1|151635_152889_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	30.0	1.5e-27
QAU50605.1|154295_154490_-	hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	58.7	1.8e-09
QAU51203.1|154523_155750_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.7	1.1e-27
QAU50606.1|156311_156530_-	hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	50.0	7.6e-12
QAU50607.1|156526_156928_-	IS66 family insertion sequence hypothetical protein	NA	A0A1B0YZU7	Pseudomonas_phage	56.5	5.1e-06
QAU50608.1|157224_157926_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.5	4.5e-13
QAU50609.1|157918_158653_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.1	4.8e-10
>prophage 2
CP030054	Bradyrhizobium sp. CCBAU 51670 plasmid unnamed1, complete sequence	979291	322812	355952	979291	transposase,integrase	Enterobacteria_phage(22.22%)	21	316974:317001	329118:329145
316974:317001	attL	CTGAGCTGCTGCCGGTTTGATGGACACC	NA	NA	NA	NA
QAU50704.1|322812_324006_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAU50705.1|324015_324918_-|integrase	integrase	integrase	S5W9T9	Leptospira_phage	35.1	2.9e-33
QAU50706.1|330645_331890_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	33.9	4.5e-40
329118:329145	attR	GGTGTCCATCAAACCGGCAGCAGCTCAG	NA	NA	NA	NA
QAU50707.1|331889_332687_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	48.0	5.3e-63
QAU50708.1|333426_334248_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
QAU50709.1|334448_335987_+	malonyl-CoA synthase	NA	A0A2H4PQM9	Staphylococcus_phage	26.3	9.1e-27
QAU50710.1|336020_337409_+	amidase	NA	NA	NA	NA	NA
QAU50711.1|337708_338383_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
QAU51222.1|339260_339878_+	cysteine hydrolase	NA	NA	NA	NA	NA
QAU50712.1|340138_341461_+	CapA family protein	NA	NA	NA	NA	NA
QAU50713.1|341633_342736_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	26.8	3.6e-09
QAU51223.1|343216_343816_-	YecA family protein	NA	NA	NA	NA	NA
QAU50714.1|343863_344409_-	hypothetical protein	NA	A0A218MNE7	uncultured_virus	37.4	6.3e-23
QAU50715.1|344411_345011_-	hypothetical protein	NA	NA	NA	NA	NA
QAU50716.1|345536_347162_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAU50717.1|347158_348136_+	ABC transporter permease	NA	NA	NA	NA	NA
QAU50718.1|348132_349053_+	ABC transporter permease	NA	NA	NA	NA	NA
QAU50719.1|349052_350795_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.7	2.2e-21
QAU50720.1|352363_353176_-	hypothetical protein	NA	A0A059NT77	Lactococcus_phage	35.1	8.5e-32
QAU50721.1|353172_354642_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
QAU51224.1|354923_355952_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	30.4	1.9e-20
>prophage 3
CP030054	Bradyrhizobium sp. CCBAU 51670 plasmid unnamed1, complete sequence	979291	370783	450224	979291	transposase,integrase	Acidithiobacillus_phage(18.75%)	51	354637:354696	435148:436552
354637:354696	attL	CTTCATGTAGAGCCTTCTGTGGTTGCCGCCCGCAATGCAAGAAGTTTCTGACCCTTTGGC	NA	NA	NA	NA
QAU50728.1|370783_372298_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
QAU50729.1|374081_374672_-	YecA family protein	NA	NA	NA	NA	NA
QAU50730.1|376309_376663_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBY2	Stx2-converting_phage	45.1	3.3e-17
QAU50731.1|376659_377091_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QAU50732.1|377547_377766_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50733.1|383814_384063_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50734.1|384346_384694_+	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZDM8	Stx2-converting_phage	49.1	4.0e-23
QAU50735.1|384764_384986_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50736.1|386584_387505_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	52.8	2.4e-75
QAU50737.1|387775_388015_-	hypothetical protein	NA	NA	NA	NA	NA
QAU50738.1|388011_389205_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
QAU50739.1|389214_390117_-|integrase	integrase	integrase	S5W9T9	Leptospira_phage	35.1	2.9e-33
QAU50740.1|390205_390367_-	hypothetical protein	NA	NA	NA	NA	NA
QAU50741.1|390503_390815_+	hypothetical protein	NA	A0A0C5AJ30	Paenibacillus_phage	38.0	2.0e-05
QAU50742.1|391077_392382_+|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	49.6	4.4e-115
QAU50743.1|392415_393072_+|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	35.5	3.4e-23
QAU50744.1|395026_396298_-	hypothetical protein	NA	NA	NA	NA	NA
QAU50745.1|396396_397077_-	hypothetical protein	NA	NA	NA	NA	NA
QAU50746.1|397323_397968_+	hypothetical protein	NA	K4I413	Acidithiobacillus_phage	44.7	9.7e-47
QAU51225.1|397982_398744_+|transposase	transposase	transposase	K4HZD4	Acidithiobacillus_phage	53.3	1.7e-66
QAU50747.1|399119_399473_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QAU50748.1|401072_402311_+|integrase	integrase	integrase	A0A0K2CP59	Brevibacillus_phage	30.2	8.4e-07
QAU51226.1|403229_404231_+|integrase	integrase	integrase	A0A2K9VH72	Gordonia_phage	26.9	1.6e-11
QAU50749.1|405136_406324_-	crotonyl-CoA carboxylase/reductase	NA	NA	NA	NA	NA
QAU50750.1|406931_408473_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
QAU51227.1|410190_411582_+	MATE family efflux transporter	NA	NA	NA	NA	NA
QAU50751.1|411787_411979_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50752.1|412759_413080_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50753.1|414364_415393_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
QAU50754.1|415521_416274_-	hypothetical protein	NA	NA	NA	NA	NA
QAU50755.1|417564_419037_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
QAU51228.1|419318_420347_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	30.4	1.9e-20
QAU50756.1|421322_421658_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
QAU50757.1|422455_423181_+	hypothetical protein	NA	NA	NA	NA	NA
QAU51229.1|423626_424907_+	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	24.1	8.1e-21
QAU50758.1|425051_425243_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50759.1|425487_426573_-	uridylate kinase	NA	NA	NA	NA	NA
QAU50760.1|427835_429440_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA	NA
QAU51230.1|431958_432165_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	43.1	4.5e-06
QAU50761.1|432271_432472_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50762.1|432871_433720_-	hypothetical protein	NA	A0A059NT77	Lactococcus_phage	34.5	1.2e-31
QAU50763.1|433680_435153_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
QAU51231.1|435434_436463_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	30.4	1.9e-20
QAU50764.1|441188_441500_+	hypothetical protein	NA	NA	NA	NA	NA
435148:436552	attR	CTTCATGTAGAGCCTTCTGTGGTTGCCGCCCGCAATGCAAGAAGTTTCTGACCCTTTGGCGTGTGATCGAGTGCGGTCTTCTGTCAGGCCTTCCTTTACGGCATTTTCAGAAGCCGCTGGCCGGTATGGTGATCCGCGGACCAGGTCCAATTCTCATCTCCGAGCACGTCGGCTCTTTGGCTCTAGCTGGTTTCCTGATCCAGATCTGTTCGATCGTTGCGCCCATTCGGGTCGTCGCCTTCTCACACCCCCTTCGCCAACGTCAGGCTATTTCGTGCTGCATGCAGTCATGCCGTCACTGCCTGCGCTGGGTTCCGATAATCCTCCTTCCGGGTGAGCATGGCCCAAATCGTCCGAGCCATCTTGTTCGCCAAGGCGATCGCCACAAGCATGCGCGGCTTCCTCGCCAGCATCTGCGCCAGCCAGGATCCGCTAGGGATCGACTTGCGCCCGAGCCAGTTCAGCCGCGACATCGCCCCAACGATGAGCAACTGGCGAATGTCCGCCTGTCCTTCCTTCGAAACGCGTCCGAGCCTTTCCTTTCCCCCTGAGGAATGTTGCCGTGGGACCAAGCCGAGCCAAGCCGCGAAGTCTCGGCCACGTCGAAAGGCCGCCATGTCGGGCGCGAAAGCCTCGATCGCGAGTGCGGTCAGCGGGCCGACCCCCGGCATTGTCTGCAGCCGCTGCGCCGTGACCGTCCGCGTCGCCAACTTCTTGAGCTGCTCTGCCTTGGCATCGATCCGCTCCGTCTTGTAGGCGATCTGATCAATGAGACTCCGACATTCCTCGCGGACCAGTTCTGGTAGATCGCTGTTCGGATCTTCGAGGATTGCGTCAATGCGTTTAAGTTGTTCGATTCCTTGCGGGATGATATGGCCGAATTCGTAGAGAACAGAACGCAGCGCATTCACCAGATCGGTGCGCTGATGAACAAGGCGCTTCCGAGCCCGAAAGAGCACTGCCCTGGCCTGCTGTTCTTCCGATTTCGGCTCGACGAAGCGCATCTCGGGGCGCTGTGCCGCGATCACGATTGCTTCGGCATCAGCCGCGTCGTTCTTTTGGCGTTTCACAAAAGGCTTCACATATTGCGGAGCGATCAGTTTCACTTCATGGCCGAGCTTGACCATCTCCCGTGCCCAATAGTGGGCGCTGCCACAGGCTTCCATCACCACCACTGCCGATGGGTGGCCCGCCATGAACTTCCGAAACTGAAGCCGCGACAGTTTCTTTCGAAATTTCAAGTGTCCCGCCATTGACGCCCCGTGGAGCTGAAACACATTCTTGGCTAGATCCACTCCGATCACCGTATCCATCAATTTGCCGTCCTCTTCGCTTCGGGGTTCAAACACTGCGTTCTTGGCACATTACGATGCCGTCTGGGGAGGGCGGCAACCATCCCATCTCA	NA	NA	NA	NA
QAU50765.1|441631_442546_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50766.1|442763_443690_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50767.1|444641_444845_-	hypothetical protein	NA	NA	NA	NA	NA
QAU50768.1|445131_445845_+	hypothetical protein	NA	NA	NA	NA	NA
QAU50769.1|446152_446533_-	response regulator	NA	NA	NA	NA	NA
QAU51232.1|446589_447249_-	DNA-binding response regulator	NA	NA	NA	NA	NA
QAU50770.1|448835_450224_-|transposase	IS5/IS1182 family transposase	transposase	NA	NA	NA	NA
