assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004114755.1_ASM411475v1	CP035307	Lactobacillus helveticus strain IDCC3801 chromosome, complete genome	1	35452-35604	1	CRISPRCasFinder	no	cas14j	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	AATAGTTTGATATTCAAACTAATATGGTATATGATGTGTTTTGTTCAAA	49	0	0	NA	NA	NA	1	1	TypeV	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|80aa|up_9|CP035307.1_17863_18103_-	pfam13333, rve_2, Integrase core domain	NA|396aa|up_8|CP035307.1_19906_21094_+	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily	NA|280aa|up_7|CP035307.1_21090_21930_+	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|450aa|up_6|CP035307.1_23621_24971_-	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|231aa|up_5|CP035307.1_25378_26071_-	cd17513, RMtype1_S_AveSPN6ORF1907P_TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Archaeoglobus veneficus SNP6 S subunit (S	NA|178aa|up_4|CP035307.1_26481_27015_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|756aa|up_3|CP035307.1_27972_30240_-	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|413aa|up_2|CP035307.1_30443_31682_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|280aa|up_1|CP035307.1_31985_32825_-	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|396aa|up_0|CP035307.1_32821_34009_-	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily	NA|149aa|down_0|CP035307.1_35712_36159_+	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|156aa|down_1|CP035307.1_36188_36656_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|328aa|down_2|CP035307.1_36652_37636_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|81aa|down_3|CP035307.1_37694_37937_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|306aa|down_4|CP035307.1_37946_38864_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|244aa|down_5|CP035307.1_38863_39595_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|410aa|down_6|CP035307.1_39616_40846_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|157aa|down_7|CP035307.1_40849_41320_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|139aa|down_8|CP035307.1_41324_41741_+	cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway	NA|460aa|down_9|CP035307.1_41754_43134_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated
GCA_004114755.1_ASM411475v1	CP035307	Lactobacillus helveticus strain IDCC3801 chromosome, complete genome	2	377567-377749	1	PILER-CR	no	cas14j	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	CACGCGTGGGTTCAAATCCCACAT	24	0	0	NA	NA	NA	2	2	TypeV	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|105aa|up_6|CP035307.1_370078_370393_+,NA|143aa|up_1|CP035307.1_375130_375559_+,NA	NA|307aa|up_9|CP035307.1_367442_368363_+	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|231aa|up_8|CP035307.1_368429_369122_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|235aa|up_7|CP035307.1_369166_369871_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|105aa|up_6|CP035307.1_370078_370393_+	NA	NA|459aa|up_5|CP035307.1_370429_371806_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|451aa|up_4|CP035307.1_372168_373521_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|112aa|up_3|CP035307.1_373894_374230_+	pfam18862, ApeA_NTD1, ApeA N-terminal domain 1	NA|66aa|up_2|CP035307.1_374718_374916_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|143aa|up_1|CP035307.1_375130_375559_+	NA	NA|167aa|up_0|CP035307.1_376900_377401_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|489aa|down_0|CP035307.1_377896_379363_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|171aa|down_1|CP035307.1_379370_379883_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|591aa|down_2|CP035307.1_379992_381765_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|179aa|down_3|CP035307.1_382166_382703_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|288aa|down_4|CP035307.1_382767_383631_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|251aa|down_5|CP035307.1_384226_384979_+	pfam17312, Helveticin_J, Bacteriocin helveticin-J	NA|359aa|down_6|CP035307.1_385335_386412_+	pfam03217, SLAP, SLAP domain	cas14j|395aa|down_7|CP035307.1_386751_387936_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|272aa|down_8|CP035307.1_387990_388806_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|443aa|down_9|CP035307.1_388860_390189_-	PRK10720, PRK10720, uracil transporter; Provisional
GCA_004114755.1_ASM411475v1	CP035307	Lactobacillus helveticus strain IDCC3801 chromosome, complete genome	3	416845-416982	2	CRISPRCasFinder	no	cas14j	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	AAAAACATTCGCAGGATTGAATGCTTTTTTTGATATAATTGA	42	1	1	416887-416940	CP035307.1_416794-416847	NA	1	1	TypeV	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|193aa|up_9|CP035307.1_403395_403974_+	pfam09819, ABC_cobalt, ABC-type cobalt transport system, permease component	NA|211aa|up_8|CP035307.1_405491_406124_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	cas14j|443aa|up_7|CP035307.1_406340_407669_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|247aa|up_6|CP035307.1_408420_409161_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|273aa|up_5|CP035307.1_409171_409990_+	cd01000, PBP2_Cys_DEBP_like, Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold	NA|214aa|up_4|CP035307.1_409989_410631_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|218aa|up_3|CP035307.1_410645_411299_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|306aa|up_2|CP035307.1_411374_412292_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|434aa|up_1|CP035307.1_414579_415881_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|268aa|up_0|CP035307.1_416034_416838_+	pfam16285, DUF4931, Domain of unknown function (DUF4931)	NA|309aa|down_0|CP035307.1_417015_417942_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|231aa|down_1|CP035307.1_417941_418634_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|672aa|down_2|CP035307.1_418694_420710_+	pfam02705, K_trans, K+ potassium transporter	NA|309aa|down_3|CP035307.1_420827_421754_+	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases	NA|242aa|down_4|CP035307.1_421753_422479_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|273aa|down_5|CP035307.1_422789_423608_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|276aa|down_6|CP035307.1_424029_424857_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|265aa|down_7|CP035307.1_424943_425738_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|426aa|down_8|CP035307.1_425749_427027_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|413aa|down_9|CP035307.1_427001_428240_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCA_004114755.1_ASM411475v1	CP035307	Lactobacillus helveticus strain IDCC3801 chromosome, complete genome	4	1406945-1409242	1,2,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U,Type I-C, Type I-U?	ATTTCAATCCACGCACTCACAAGGAGTGCGAC,ATTTCAATCCACGCACTCACAAGGAGTGCGAC,ATTTCAATCCACGCACTCACAAGGAGTGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	34,33,33	34	TypeI-U,TypeI-C,TypeI-U?	Cas14u_CAS-V,cas14j,csa3,RT,DEDDh,cas3,DinG,cas14k,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|178aa|up_9|CP035307.1_1393036_1393570_-	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|417aa|up_8|CP035307.1_1395555_1396806_-	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|124aa|up_7|CP035307.1_1396812_1397184_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|645aa|up_6|CP035307.1_1397275_1399210_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|303aa|up_5|CP035307.1_1399500_1400409_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|444aa|up_4|CP035307.1_1400440_1401772_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|156aa|up_3|CP035307.1_1401774_1402242_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|201aa|up_2|CP035307.1_1402244_1402847_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|277aa|up_1|CP035307.1_1402843_1403674_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|888aa|up_0|CP035307.1_1403682_1406346_-	PRK05755, PRK05755, DNA polymerase I; Provisional	cas2|97aa|down_0|CP035307.1_1409403_1409694_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|CP035307.1_1409703_1410735_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|CP035307.1_1410731_1411388_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_3|CP035307.1_1411390_1412242_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|658aa|down_4|CP035307.1_1412244_1414218_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|248aa|down_5|CP035307.1_1414217_1414961_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|845aa|down_6|CP035307.1_1414975_1417510_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|420aa|down_7|CP035307.1_1418011_1419271_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|514aa|down_8|CP035307.1_1419283_1420825_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|199aa|down_9|CP035307.1_1420826_1421423_-	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)
