assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004114735.1_ASM411473v1	CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	1	22135-22236	1	CRISPRCasFinder	no	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Type III-A,Type III-C,Type III-D,Type III-B	GATATAAACCTAATTACCTCGAGAGGGGAC	30	0	0	NA	NA	NA	1	1	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|73aa|up_8|CP035306.1_16648_16867_+,NA|72aa|up_4|CP035306.1_18608_18824_-,NA	NA|64aa|up_9|CP035306.1_16020_16212_+	COG4405, COG4405, Uncharacterized protein conserved in bacteria [Function unknown]	NA|73aa|up_8|CP035306.1_16648_16867_+	NA	NA|223aa|up_7|CP035306.1_17068_17737_+	pfam05857, TraX, TraX protein	NA|75aa|up_6|CP035306.1_17737_17962_+	pfam05857, TraX, TraX protein	NA|183aa|up_5|CP035306.1_18003_18552_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|72aa|up_4|CP035306.1_18608_18824_-	NA	NA|268aa|up_3|CP035306.1_18792_19596_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|CP035306.1_19614_20562_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|CP035306.1_20700_21705_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|CP035306.1_21704_22034_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|CP035306.1_22372_23104_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|CP035306.1_23084_25361_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|127aa|down_2|CP035306.1_25364_25745_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|CP035306.1_25744_26407_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|CP035306.1_26408_27308_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|CP035306.1_27310_28384_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|392aa|down_6|CP035306.1_28537_29713_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|232aa|down_7|CP035306.1_29912_30608_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_8|CP035306.1_30696_31326_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_9|CP035306.1_32022_33474_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
GCA_004114735.1_ASM411473v1	CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	2	490867-492949	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Type II-C,Type II-B,Type II-A	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	31,31,12	31	TypeII-C,TypeII-B,TypeII-A	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|66aa|up_7|CP035306.1_484577_484775_-,NA|148aa|up_4|CP035306.1_487659_488103_-,NA|80aa|up_0|CP035306.1_490543_490783_-,NA	NA|737aa|up_9|CP035306.1_481553_483764_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|up_8|CP035306.1_483763_484504_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|66aa|up_7|CP035306.1_484577_484775_-	NA	NA|438aa|up_6|CP035306.1_484941_486255_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_5|CP035306.1_486348_486477_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|148aa|up_4|CP035306.1_487659_488103_-	NA	NA|128aa|up_3|CP035306.1_488133_488517_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|CP035306.1_489205_489448_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|CP035306.1_489615_490506_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|CP035306.1_490543_490783_-	NA	csn2|220aa|down_0|CP035306.1_493270_493930_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|CP035306.1_493919_494264_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|CP035306.1_494260_495130_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|CP035306.1_495129_499296_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|CP035306.1_499628_500276_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|CP035306.1_500387_502112_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|CP035306.1_502208_504161_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|202aa|down_7|CP035306.1_504161_504767_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|CP035306.1_504807_505503_-	pfam04172, LrgB, LrgB-like family	NA|125aa|down_9|CP035306.1_505495_505870_-	pfam03788, LrgA, LrgA family
GCA_004114735.1_ASM411473v1	CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	3	708355-708446	3	CRISPRCasFinder	no	cas3	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|86aa|up_3|CP035306.1_703973_704231_-,NA|143aa|down_7|CP035306.1_714347_714776_-,NA|64aa|down_9|CP035306.1_715960_716152_-	cas3|673aa|up_9|CP035306.1_695423_697442_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|CP035306.1_697570_698674_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|CP035306.1_698694_699054_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|CP035306.1_699057_700089_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|CP035306.1_700186_701218_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|CP035306.1_701241_703791_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|86aa|up_3|CP035306.1_703973_704231_-	NA	NA|316aa|up_2|CP035306.1_704317_705265_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|CP035306.1_705330_706224_-	pfam00480, ROK, ROK family	NA|634aa|up_0|CP035306.1_706408_708310_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|CP035306.1_708558_710001_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|CP035306.1_710009_710975_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|CP035306.1_711064_711499_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|CP035306.1_711491_711881_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|CP035306.1_711951_712512_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|CP035306.1_712624_713080_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|CP035306.1_713098_714160_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|CP035306.1_714347_714776_-	NA	NA|130aa|down_8|CP035306.1_715383_715773_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|64aa|down_9|CP035306.1_715960_716152_-	NA
GCA_004114735.1_ASM411473v1	CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	4	1580024-1581445	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	Type II-C,Type II-B,Type II-A	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	21,21,21	21	TypeII-C,TypeII-B,TypeII-A	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,csn2,cas9,DEDDh,cas3,DinG	NA|86aa|up_5|CP035306.1_1572837_1573095_-,NA	NA|454aa|up_9|CP035306.1_1569422_1570784_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|277aa|up_8|CP035306.1_1570993_1571824_+	cd10447, GIY-YIG_unchar_2, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria and archaea	NA|74aa|up_7|CP035306.1_1571991_1572213_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|153aa|up_6|CP035306.1_1572212_1572671_+	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|86aa|up_5|CP035306.1_1572837_1573095_-	NA	NA|205aa|up_4|CP035306.1_1573264_1573879_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|CP035306.1_1574132_1577498_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|CP035306.1_1577675_1578587_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|CP035306.1_1578588_1578912_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|CP035306.1_1578908_1579961_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|CP035306.1_1581486_1582302_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|CP035306.1_1582301_1583204_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|CP035306.1_1583567_1585700_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|CP035306.1_1585686_1586127_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|CP035306.1_1586192_1586456_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|CP035306.1_1586584_1587514_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|CP035306.1_1587513_1588305_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|CP035306.1_1588427_1588826_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|CP035306.1_1588838_1589279_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|CP035306.1_1589299_1589596_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
