The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	1794836	589997	647863	1794836	transposase,bacteriocin,protease,tRNA	Bacillus_virus(28.57%)	58	NA	NA
QAU29341.1|589997_592097_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.5	5.4e-123
QAU29342.1|592810_593902_-	nucleotidyltransferase	NA	NA	NA	NA	NA
QAU30403.1|593908_594718_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QAU29343.1|594973_595327_-	ribosome silencing factor	NA	NA	NA	NA	NA
QAU29344.1|595350_595941_-	HD domain-containing protein	NA	NA	NA	NA	NA
QAU29345.1|595937_596570_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	31.4	1.4e-18
QAU29346.1|596673_596991_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
QAU29347.1|597229_598348_-	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA	NA
QAU29348.1|598347_598875_-	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA	NA
QAU29349.1|599011_599926_-	EamA family transporter	NA	NA	NA	NA	NA
QAU29350.1|600002_600341_-	hypothetical protein	NA	NA	NA	NA	NA
QAU29351.1|600483_601926_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
QAU29352.1|601925_603392_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
QAU29353.1|603391_603694_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
QAU29354.1|603833_604088_-	glycosyltransferase	NA	NA	NA	NA	NA
QAU29355.1|604100_604310_-	glycosyltransferase	NA	NA	NA	NA	NA
QAU29356.1|606222_606732_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA	NA
QAU30404.1|606743_607592_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAU29357.1|607715_608267_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.3	2.6e-24
QAU29358.1|608329_609115_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
QAU29359.1|609374_610589_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
QAU29360.1|610943_611396_+	universal stress protein	NA	NA	NA	NA	NA
QAU30405.1|612452_612827_-	hypothetical protein	NA	NA	NA	NA	NA
QAU29361.1|613038_613839_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	31.8	2.9e-24
QAU29362.1|614834_616166_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
QAU29363.1|616277_617060_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	5.9e-14
QAU29364.1|617681_619748_-	sodium:proton antiporter	NA	NA	NA	NA	NA
QAU29365.1|619756_619999_-	hypothetical protein	NA	NA	NA	NA	NA
QAU29366.1|619995_620544_-	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	44.1	3.5e-37
QAU29367.1|620540_621485_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	48.3	8.6e-36
QAU30406.1|621569_622607_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
QAU29368.1|622623_623121_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	1.1e-13
QAU29369.1|623154_623703_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
QAU29370.1|623844_624765_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
QAU29371.1|624830_625055_-	DUF4059 family protein	NA	NA	NA	NA	NA
QAU29372.1|625269_626013_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.3e-30
QAU30407.1|626012_626759_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
QAU29373.1|627146_627977_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
QAU29374.1|628436_628670_-	hypothetical protein	NA	NA	NA	NA	NA
QAU29375.1|628967_630071_-	DNA polymerase IV	NA	NA	NA	NA	NA
QAU29376.1|630349_632659_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.4	8.1e-112
QAU29377.1|632925_633708_+	carbonic anhydrase family protein	NA	NA	NA	NA	NA
QAU30408.1|633758_634211_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QAU29378.1|634561_634867_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
QAU29379.1|635844_636600_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
QAU29380.1|636596_637247_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.0	3.7e-22
QAU29381.1|637449_638406_-	serine hydrolase	NA	NA	NA	NA	NA
QAU29382.1|638405_639161_-	peptidase	NA	NA	NA	NA	NA
QAU29383.1|639442_639805_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAU29384.1|639891_640755_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	34.4	3.9e-27
QAU29385.1|640875_643143_+	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
QAU29386.1|643222_643603_-|bacteriocin	bacteriocin secretion protein	bacteriocin	NA	NA	NA	NA
QAU29387.1|643727_643991_-	hypothetical protein	NA	NA	NA	NA	NA
QAU29388.1|644312_644609_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
QAU29389.1|644773_644980_-	hypothetical protein	NA	NA	NA	NA	NA
QAU29390.1|645010_645670_-	thioredoxin	NA	NA	NA	NA	NA
QAU29391.1|645892_647462_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
QAU29392.1|647608_647863_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 2
CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	1794836	774552	812315	1794836	transposase,bacteriocin,protease,tRNA	Streptococcus_phage(37.5%)	39	NA	NA
QAU29498.1|774552_775695_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.4	2.7e-84
QAU30415.1|775948_776419_-|transposase	IS200/IS605 family transposase	transposase	G9CU69	Helicobacter_phage	29.5	2.0e-09
QAU29499.1|776641_777946_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.8	3.8e-167
QAU29500.1|778023_778158_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
QAU29501.1|779043_780093_-	protein jag	NA	NA	NA	NA	NA
QAU29502.1|780104_780911_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
QAU29503.1|781025_781361_-	ribonuclease P protein component	NA	NA	NA	NA	NA
QAU29504.1|781445_782831_-	argininosuccinate lyase	NA	NA	NA	NA	NA
QAU29505.1|783159_784359_-	argininosuccinate synthase	NA	NA	NA	NA	NA
QAU29506.1|785261_786716_-|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L481	Tupanvirus	30.3	6.9e-08
QAU29507.1|787056_787530_-	hypothetical protein	NA	NA	NA	NA	NA
QAU30416.1|787526_787976_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAU29508.1|788067_788757_-	50S ribosomal protein L1	NA	NA	NA	NA	NA
QAU29509.1|788856_789282_-	50S ribosomal protein L11	NA	NA	NA	NA	NA
QAU29510.1|789453_789807_+	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
QAU29511.1|789899_790397_-	carbonic anhydrase	NA	NA	NA	NA	NA
QAU29512.1|791323_792685_-	DNA repair protein RadA	NA	NA	NA	NA	NA
QAU29513.1|792862_793309_-	dUTP diphosphatase	NA	Q332E8	Clostridium_botulinum_C_phage	50.7	8.5e-34
QAU29514.1|796031_796487_+	hypothetical protein	NA	NA	NA	NA	NA
QAU30417.1|796719_797742_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
QAU29515.1|797760_798675_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.2	4.1e-75
QAU29516.1|798720_799395_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
QAU29517.1|799385_799913_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
QAU29518.1|799981_801115_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
QAU29519.1|801193_801892_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
QAU29520.1|802846_803680_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
QAU29521.1|804048_804216_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
QAU29522.1|804268_804532_+	hypothetical protein	NA	NA	NA	NA	NA
QAU29523.1|804612_805131_-	nucleoside deaminase	NA	NA	NA	NA	NA
QAU29524.1|805893_806286_-	single-stranded DNA-binding protein	NA	A1EAD1	Streptococcus_phage	48.5	1.5e-26
QAU29525.1|806490_806718_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
QAU29526.1|806732_807764_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
QAU29527.1|807901_808525_-	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
QAU29528.1|808534_808849_-	thioredoxin	NA	NA	NA	NA	NA
QAU29529.1|808845_809130_-	DUF4651 domain-containing protein	NA	NA	NA	NA	NA
QAU29530.1|809229_810297_+	glutamyl aminopeptidase	NA	NA	NA	NA	NA
QAU29531.1|810312_811083_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	35.7	8.0e-32
QAU29532.1|811112_811775_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAU29533.1|811871_812315_-|protease	CAAX protease	protease	NA	NA	NA	NA
>prophage 3
CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	1794836	929780	945352	1794836	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
QAU29650.1|929780_930410_-	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	45.8	3.6e-22
QAU29651.1|930649_931204_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	48.7	1.1e-25
QAU29652.1|931507_932302_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
QAU29653.1|932294_933137_-	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
QAU29654.1|933112_933943_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	4.5e-20
QAU29655.1|933955_934498_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
QAU29656.1|934510_935368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QAU29657.1|935426_936704_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.3	4.3e-22
QAU29658.1|936705_937956_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.9	8.6e-92
QAU29659.1|938033_938411_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
QAU29660.1|938413_939514_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
QAU29661.1|939682_941164_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	6.8e-96
QAU29662.1|941340_942363_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
QAU29663.1|942790_943663_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.6	1.1e-32
QAU29664.1|943729_945352_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	5.4e-46
>prophage 4
CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	1794836	1546942	1559991	1794836		Streptococcus_phage(77.78%)	12	NA	NA
QAU30166.1|1546942_1547944_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
QAU30167.1|1548002_1548200_+	MmcQ family protein	NA	NA	NA	NA	NA
QAU30439.1|1549082_1550198_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.6	5.2e-157
QAU30168.1|1550244_1550700_-	DUF1694 domain-containing protein	NA	W6LLD2	Streptococcus_phage	98.0	2.2e-77
QAU30169.1|1550908_1552213_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	1.4e-246
QAU30170.1|1552364_1552550_-	hypothetical protein	NA	W6LMT3	Streptococcus_phage	96.7	3.0e-25
QAU30171.1|1552711_1554898_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
QAU30172.1|1555059_1556223_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.0	1.1e-218
QAU30173.1|1556219_1556897_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	100.0	1.9e-122
QAU30174.1|1556886_1557744_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
QAU30175.1|1557756_1558824_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
QAU30176.1|1558824_1559991_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	34.9	1.6e-39
>prophage 5
CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	1794836	1654117	1663044	1794836		Bacillus_phage(50.0%)	8	NA	NA
QAU30266.1|1654117_1654723_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	33.7	8.0e-19
QAU30267.1|1654817_1656068_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
QAU30268.1|1656074_1657052_+	nucleoid-associated protein	NA	NA	NA	NA	NA
QAU30269.1|1657053_1657665_+	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.0	4.6e-22
QAU30270.1|1657697_1659437_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
QAU30271.1|1659426_1661175_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.9	9.3e-52
QAU30441.1|1661353_1661485_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
QAU30272.1|1661493_1663044_+	D-alanine--poly(phosphoribitol) ligase subunit 1	NA	A0A2K9KZV5	Tupanvirus	29.3	2.0e-42
>prophage 6
CP035306	Streptococcus thermophilus strain IDCC2201 chromosome, complete genome	1794836	1684055	1731112	1794836	transposase,bacteriocin,protease,tRNA	Streptococcus_phage(28.0%)	39	NA	NA
QAU30289.1|1684055_1685625_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
QAU30290.1|1685816_1687028_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	73.4	1.0e-166
QAU30291.1|1687386_1688457_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
QAU30292.1|1688574_1690113_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
QAU30293.1|1690937_1695698_+	YSIRK-type signal peptide-containing protein	NA	A0A217EQY2	Bacillus_phage	27.7	4.2e-06
QAU30294.1|1695823_1697402_+|transposase	IS3 family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.4	1.1e-51
QAU30295.1|1697527_1698832_+|transposase	ISL3-like element ISSth1 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	70.8	3.8e-167
QAU30296.1|1698931_1699168_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
QAU30297.1|1699236_1700157_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.6	3.8e-36
QAU30298.1|1700479_1701070_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
QAU30299.1|1701108_1701519_+	hypothetical protein	NA	A0A0H3UZD4	Geobacillus_virus	64.8	4.6e-42
QAU30300.1|1701499_1702300_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	43.4	2.2e-48
QAU30301.1|1703021_1703420_+	cytidine deaminase	NA	NA	NA	NA	NA
QAU30302.1|1703482_1704553_+	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	38.1	6.7e-53
QAU30303.1|1704666_1706205_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	1.5e-16
QAU30304.1|1706197_1707265_+	ABC transporter permease	NA	NA	NA	NA	NA
QAU30305.1|1707266_1708223_+	ABC transporter permease	NA	NA	NA	NA	NA
QAU30306.1|1708326_1708962_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	60.5	5.9e-73
QAU30307.1|1709057_1711544_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	47.9	5.1e-213
QAU30308.1|1711688_1712171_+	hypothetical protein	NA	NA	NA	NA	NA
QAU30309.1|1712175_1713357_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
QAU30310.1|1713393_1714740_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.8	6.7e-58
QAU30443.1|1714944_1715175_+	hypothetical protein	NA	NA	NA	NA	NA
QAU30311.1|1716256_1716637_+	RidA family protein	NA	NA	NA	NA	NA
QAU30312.1|1716811_1717465_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.9	1.7e-62
QAU30313.1|1717464_1717908_+	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	1.7e-39
QAU30314.1|1717900_1718617_+	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	47.3	2.0e-61
QAU30315.1|1718736_1719228_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
QAU30316.1|1720047_1720236_+|protease	serine protease	protease	NA	NA	NA	NA
QAU30317.1|1720440_1721211_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
QAU30318.1|1721191_1722082_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
QAU30319.1|1722078_1723053_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.8	4.0e-137
QAU30320.1|1723049_1723961_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
QAU30444.1|1724957_1725182_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
QAU30321.1|1725270_1725471_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.1e-12
QAU30322.1|1725750_1725951_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	90.9	3.4e-27
QAU30323.1|1726287_1727463_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.8e-35
QAU30324.1|1727583_1729746_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	4.1e-65
QAU30325.1|1729936_1731112_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	28.9	1.1e-35
