assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004114395.1_ASM411439v1	CP034389	Escherichia coli strain RS571 chromosome, complete genome	1	1115278-1116590	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	2	2	1116162-1116194|1116163-1116194	CP034389.1_1095478-1095446|CP034389.1_1095477-1095446	I-E:I-E:I-E	21,21,21	21	Unclear	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|919aa|up_9|CP034389.1_1101870_1104627_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|CP034389.1_1104683_1105985_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|CP034389.1_1106032_1108267_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|CP034389.1_1108344_1108593_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|CP034389.1_1108592_1108928_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|CP034389.1_1108999_1109791_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|CP034389.1_1110018_1111656_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|CP034389.1_1111742_1113041_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|CP034389.1_1113100_1113973_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|CP034389.1_1114266_1114938_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|CP034389.1_1117227_1118706_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|CP034389.1_1118732_1120010_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|CP034389.1_1120328_1121114_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|CP034389.1_1121183_1122638_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|CP034389.1_1122731_1124069_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|CP034389.1_1124046_1124826_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|CP034389.1_1124822_1125683_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|CP034389.1_1125829_1126405_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|CP034389.1_1126421_1126682_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|CP034389.1_1126672_1127944_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCA_004114395.1_ASM411439v1	CP034389	Escherichia coli strain RS571 chromosome, complete genome	2	1142136-1142226	2	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	AGAGTTCCCCGCGCCAGCGGGGATAAACCG	30	0	0	NA	NA	I-E	1	1	TypeI-E	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|571aa|up_9|CP034389.1_1130501_1132214_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|CP034389.1_1132287_1133022_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|CP034389.1_1133380_1136047_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|CP034389.1_1136461_1137970_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|CP034389.1_1137962_1138445_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|CP034389.1_1138457_1139549_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|CP034389.1_1139551_1140226_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|CP034389.1_1140212_1140812_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|CP034389.1_1140827_1141745_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|CP034389.1_1141746_1142031_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP034389.1_1142307_1143345_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034389.1_1143596_1144505_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP034389.1_1144506_1145934_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP034389.1_1145933_1146539_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP034389.1_1146588_1146912_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP034389.1_1147105_1147417_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP034389.1_1147435_1148146_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP034389.1_1148145_1148625_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP034389.1_1148621_1149671_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP034389.1_1149651_1150413_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_004114395.1_ASM411439v1	CP034389	Escherichia coli strain RS571 chromosome, complete genome	3	2348570-2348693	3	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|CP034389.1_2357589_2357679_+	NA|471aa|up_9|CP034389.1_2338022_2339435_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP034389.1_2339991_2340201_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP034389.1_2340656_2341283_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP034389.1_2341303_2343406_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP034389.1_2343409_2344057_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP034389.1_2344120_2344789_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP034389.1_2344785_2345571_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP034389.1_2345574_2346387_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP034389.1_2346398_2348003_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP034389.1_2348128_2348434_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP034389.1_2349007_2350264_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP034389.1_2350304_2351678_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP034389.1_2351892_2352534_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP034389.1_2352573_2353722_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP034389.1_2354012_2355224_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP034389.1_2355336_2356269_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP034389.1_2356265_2357291_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|CP034389.1_2357589_2357679_+	NA	NA|390aa|down_8|CP034389.1_2357844_2359014_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|CP034389.1_2359159_2359741_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_004114395.1_ASM411439v1	CP034389	Escherichia coli strain RS571 chromosome, complete genome	5	3169594-3169741	5,2	CRISPRCasFinder,PILER-CR	no		cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|60aa|down_9|CP034389.1_3181465_3181645_-	NA|431aa|up_9|CP034389.1_3154632_3155925_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|CP034389.1_3156015_3157359_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|CP034389.1_3157369_3157981_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1357aa|up_6|CP034389.1_3158139_3162210_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|CP034389.1_3162344_3162839_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|CP034389.1_3163382_3164348_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|CP034389.1_3164470_3166237_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|CP034389.1_3166237_3167959_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|CP034389.1_3168000_3168705_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|CP034389.1_3168989_3169208_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|CP034389.1_3169955_3172232_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|CP034389.1_3172262_3172583_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|CP034389.1_3172905_3173130_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|CP034389.1_3173202_3175149_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|CP034389.1_3175145_3176261_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|331aa|down_5|CP034389.1_3176375_3177368_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|CP034389.1_3177364_3179023_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|CP034389.1_3179448_3180144_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|CP034389.1_3180601_3181501_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|60aa|down_9|CP034389.1_3181465_3181645_-	NA
GCA_004114395.1_ASM411439v1	CP034389	Escherichia coli strain RS571 chromosome, complete genome	7	4154464-4154605	6	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|96aa|up_9|CP034389.1_4143455_4143743_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|CP034389.1_4143739_4145026_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|CP034389.1_4145076_4146018_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|CP034389.1_4146032_4146803_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|CP034389.1_4147275_4148790_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|CP034389.1_4148820_4149963_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|CP034389.1_4150091_4151309_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|CP034389.1_4151382_4152936_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|CP034389.1_4153044_4153830_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|CP034389.1_4153835_4154426_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|CP034389.1_4154634_4155030_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|CP034389.1_4155290_4158512_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|CP034389.1_4158529_4159678_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|CP034389.1_4160133_4160955_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|CP034389.1_4161121_4162036_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|CP034389.1_4162101_4163052_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|CP034389.1_4163053_4163503_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|CP034389.1_4163627_4164122_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|CP034389.1_4164121_4166938_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|CP034389.1_4166980_4167922_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
