The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035368	Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome	2067358	780822	834750	2067358	transposase,head,terminase,capsid,plate,tail,tRNA,lysis,portal	Mannheimia_phage(48.57%)	66	NA	NA
QAT96340.1|780822_781473_+	transcriptional regulator	NA	A0A0M3LPF9	Mannheimia_phage	37.6	3.3e-26
QAT96341.1|781585_782305_+	WYL domain-containing protein	NA	NA	NA	NA	NA
QAT95140.1|782301_782532_+	excalibur calcium-binding domain-containing protein	NA	Q19UP2	Mannheimia_phage	43.4	8.3e-09
QAT95141.1|782534_783203_+	hypothetical protein	NA	NA	NA	NA	NA
QAT95142.1|783236_783509_+	hypothetical protein	NA	NA	NA	NA	NA
QAT95143.1|783531_784725_-	phage late control D family protein	NA	R9QBT3	Mannheimia_phage	52.5	2.2e-105
QAT95144.1|784724_785162_-|tail	phage tail protein	tail	A0A0M3LQ18	Mannheimia_phage	57.4	2.0e-40
QAT95145.1|785490_785637_-|tail	GpE family phage tail protein	tail	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
QAT95146.1|785636_785936_-|tail	phage tail assembly protein	tail	A0A0F7LBN9	Escherichia_phage	41.8	2.6e-10
QAT95147.1|786021_786528_-|tail	phage major tail tube protein	tail	Q19UP8	Mannheimia_phage	60.1	3.2e-53
QAT95148.1|786531_787716_-|tail	phage tail protein	tail	A0A1S6KZY7	Salmonella_phage	47.9	7.3e-101
QAT95149.1|788164_788383_-	hypothetical protein	NA	NA	NA	NA	NA
QAT95150.1|788433_789279_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.4	1.4e-117
QAT95151.1|789335_789455_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
QAT95152.1|789629_790118_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	57.4	2.5e-47
QAT95153.1|790110_790866_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	53.2	8.7e-31
QAT95154.1|790876_791788_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	54.4	5.0e-41
QAT95155.1|791788_792355_-|tail	phage tail protein I	tail	A0A218M4J3	Erwinia_phage	37.5	3.7e-26
QAT95156.1|792347_793262_-|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	49.3	7.7e-74
QAT95157.1|793258_793594_-|plate	baseplate assembly protein W	plate	Q19UQ6	Mannheimia_phage	56.6	2.6e-19
QAT95158.1|793593_794139_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	61.0	1.5e-40
QAT95159.1|797339_797687_+	hypothetical protein	NA	NA	NA	NA	NA
QAT95160.1|797687_798149_-	phage virion morphogenesis protein	NA	Q19UR2	Mannheimia_phage	42.0	2.2e-21
QAT95161.1|798148_798619_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	47.1	4.3e-28
QAT95162.1|798584_798848_-	hypothetical protein	NA	NA	NA	NA	NA
QAT95163.1|798844_799060_-	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.4e-10
QAT96342.1|799056_799272_-	hypothetical protein	NA	NA	NA	NA	NA
QAT95164.1|799234_799585_-	chemotaxis protein	NA	NA	NA	NA	NA
QAT95165.1|799569_800088_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.9	7.3e-37
QAT95166.1|800080_800302_-|lysis	lysis protein	lysis	NA	NA	NA	NA
QAT95167.1|800303_800513_-|tail	phage tail protein	tail	E5G6M9	Salmonella_phage	39.1	7.8e-06
QAT95168.1|800512_801019_-|head	head completion/stabilization protein	head	A0A0M3LPQ0	Mannheimia_phage	45.6	1.3e-33
QAT95169.1|801143_801806_-|terminase	terminase	terminase	Q19US0	Mannheimia_phage	45.9	5.4e-45
QAT95170.1|801805_802837_-|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	56.1	9.9e-102
QAT95171.1|802847_803666_-|capsid	GPO family capsid scaffolding protein	capsid	Q19UT4	Mannheimia_phage	51.1	1.3e-67
QAT95172.1|803830_805606_+|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.1	1.9e-217
QAT95173.1|805615_806626_+|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.7	9.6e-118
QAT95174.1|807308_807887_+	flavodoxin family protein	NA	NA	NA	NA	NA
QAT95175.1|808194_808404_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
QAT95176.1|808425_809715_+	DUF2931 family protein	NA	NA	NA	NA	NA
QAT95177.1|810762_811389_+	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
QAT95178.1|811497_811716_-	hypothetical protein	NA	NA	NA	NA	NA
QAT95179.1|812895_813432_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
QAT95180.1|813529_814612_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	42.2	1.3e-08
QAT95181.1|814634_815105_+	RDD family protein	NA	NA	NA	NA	NA
QAT95182.1|815104_815983_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
QAT95183.1|815982_816786_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
QAT95184.1|816798_817653_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	35.6	2.4e-37
QAT95185.1|817719_818667_+	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	30.8	2.0e-24
QAT95186.1|818666_819848_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
QAT95187.1|819851_820535_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	41.0	1.3e-38
QAT95188.1|820534_821785_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
QAT95189.1|821844_822255_-	DUF1043 family protein	NA	NA	NA	NA	NA
QAT95190.1|822344_822695_-	RidA family protein	NA	NA	NA	NA	NA
QAT95191.1|822806_823523_+	hypothetical protein	NA	NA	NA	NA	NA
QAT95192.1|823524_824199_+	sel1 repeat family protein	NA	NA	NA	NA	NA
QAT95193.1|824274_824898_+	hypothetical protein	NA	NA	NA	NA	NA
QAT95194.1|824839_825430_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	62.8	7.2e-57
QAT95195.1|825474_827484_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
QAT95196.1|827666_828887_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
QAT95197.1|829257_830982_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	3.6e-56
QAT95198.1|830981_831473_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
QAT95199.1|831702_832368_-	DUF484 family protein	NA	NA	NA	NA	NA
QAT95200.1|832432_833731_-	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	36.1	4.8e-69
QAT95201.1|833862_834333_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	61.9	5.8e-49
QAT95202.1|834393_834750_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
CP035368	Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome	2067358	1267392	1275673	2067358		Bacillus_virus(33.33%)	8	NA	NA
QAT95571.1|1267392_1268040_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	44.8	1.7e-43
QAT95572.1|1268085_1268229_-	hypothetical protein	NA	NA	NA	NA	NA
QAT95573.1|1268397_1269084_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.2	6.0e-55
QAT95574.1|1269076_1269502_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	41.8	3.0e-20
QAT95575.1|1269507_1270137_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1V0DYC7	Dinoroseobacter_phage	33.6	4.1e-10
QAT95576.1|1270297_1272196_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.9	5.1e-96
QAT95577.1|1272212_1273406_+	nitrite reductase, copper-containing	NA	NA	NA	NA	NA
QAT95578.1|1273417_1275673_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.6	5.7e-86
>prophage 3
CP035368	Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome	2067358	1563690	1579012	2067358	tRNA	Vibrio_phage(37.5%)	15	NA	NA
QAT95834.1|1563690_1564707_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	41.3	7.3e-65
QAT95835.1|1564776_1565190_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
QAT95836.1|1565253_1565955_+	response regulator	NA	W8CYM9	Bacillus_phage	36.2	2.4e-30
QAT95837.1|1565954_1567358_+	envelope stress sensor histidine kinase CpxA	NA	NA	NA	NA	NA
QAT95838.1|1567395_1569564_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	52.5	7.7e-189
QAT95839.1|1569550_1569760_-	copper chaperone	NA	A0A218MNH0	uncultured_virus	49.3	6.1e-11
QAT95840.1|1569840_1570227_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
QAT95841.1|1570229_1570547_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
QAT95842.1|1570678_1571566_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.9	6.2e-60
QAT95843.1|1571788_1571980_-	carbon storage regulator	NA	A0A2I7RT00	Vibrio_phage	60.8	1.9e-11
QAT95844.1|1572058_1574683_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.0	7.9e-79
QAT95845.1|1574870_1575296_-	universal stress protein UspA	NA	NA	NA	NA	NA
QAT95846.1|1575400_1576693_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
QAT95847.1|1576705_1577254_-	YecA family protein	NA	NA	NA	NA	NA
QAT95848.1|1577365_1579012_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.3	1.4e-190
