assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004103695.1_ASM410369v1	CP035280	Clostridium sp. JN-9 chromosome, complete genome	2	430129-437137	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	Unclear	GTTTTTATATAACCATACTGGAATGTAAAT,NGTTTTTATATAACCATACTGGAATGTAAAT,GTTTTTATATAACCATACTGGAATGTAAAT	30,31,30	0	0	NA	NA	I-A:I-A:I-A	106,106,40	106	Unclear	RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	NA,NA|118aa|down_9|CP035280.1_447755_448109_+	NA|450aa|up_9|CP035280.1_418423_419773_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional	cas6|245aa|up_8|CP035280.1_419948_420683_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_7|CP035280.1_420697_422386_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|291aa|up_6|CP035280.1_422430_423303_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|253aa|up_5|CP035280.1_423289_424048_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|749aa|up_4|CP035280.1_424068_426315_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	NA|425aa|up_3|CP035280.1_426435_427710_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas4|157aa|up_2|CP035280.1_428180_428651_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|331aa|up_1|CP035280.1_428664_429657_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|93aa|up_0|CP035280.1_429661_429940_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|893aa|down_0|CP035280.1_437307_439986_+	COG1221, PspF, Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]	NA|142aa|down_1|CP035280.1_440696_441122_+	cd00006, PTS_IIA_man, PTS_IIA, PTS system, mannose/sorbose specific IIA subunit	NA|161aa|down_2|CP035280.1_441137_441620_+	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|256aa|down_3|CP035280.1_441635_442403_+	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|287aa|down_4|CP035280.1_442427_443288_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|461aa|down_5|CP035280.1_443394_444777_+	cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner	NA|279aa|down_6|CP035280.1_444776_445613_+	cd16422, HAD_Pase_UmpH-like, uncharacterized subfamily of the UmpH/NagD phosphatase family, belongs to the haloacid dehalogenase-like superfamily	NA|120aa|down_7|CP035280.1_445808_446168_+	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|473aa|down_8|CP035280.1_446294_447713_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|118aa|down_9|CP035280.1_447755_448109_+	NA
GCA_004103695.1_ASM410369v1	CP035280	Clostridium sp. JN-9 chromosome, complete genome	3	1959866-1959961	3	CRISPRCasFinder	no	DEDDh	RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	Unclear	CTTTTCTATAATCTTTACTTGACTTATATC	30	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	NA|222aa|up_5|CP035280.1_1953396_1954062_+,NA|145aa|down_4|CP035280.1_1964797_1965232_+	NA|474aa|up_9|CP035280.1_1948009_1949431_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|334aa|up_8|CP035280.1_1949559_1950561_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|411aa|up_7|CP035280.1_1950590_1951823_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|345aa|up_6|CP035280.1_1952203_1953238_-	COG2768, COG2768, Uncharacterized Fe-S center protein [General function prediction only]	NA|222aa|up_5|CP035280.1_1953396_1954062_+	NA	NA|411aa|up_4|CP035280.1_1954114_1955347_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|479aa|up_3|CP035280.1_1955371_1956808_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|123aa|up_2|CP035280.1_1957034_1957403_-	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor	NA|244aa|up_1|CP035280.1_1957520_1958252_+	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|375aa|up_0|CP035280.1_1958471_1959596_-	cd05668, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	DEDDh|257aa|down_0|CP035280.1_1960538_1961309_+	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins	NA|638aa|down_1|CP035280.1_1961354_1963268_-	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily	NA|252aa|down_2|CP035280.1_1963523_1964279_+	PRK13933, PRK13933, stationary phase survival protein SurE; Provisional	NA|59aa|down_3|CP035280.1_1964586_1964763_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|145aa|down_4|CP035280.1_1964797_1965232_+	NA	NA|364aa|down_5|CP035280.1_1965467_1966559_-	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|186aa|down_6|CP035280.1_1966767_1967325_-	COG3945, COG3945, Uncharacterized conserved protein [Function unknown]	NA|148aa|down_7|CP035280.1_1967350_1967794_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|414aa|down_8|CP035280.1_1967780_1969022_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|375aa|down_9|CP035280.1_1969014_1970139_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD
GCA_004103695.1_ASM410369v1	CP035280	Clostridium sp. JN-9 chromosome, complete genome	4	2632050-2632138	4	CRISPRCasFinder	no		RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	Orphan	TAAATTATCAACATTATTGAATAACA	26	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	NA,NA|279aa|down_0|CP035280.1_2632225_2633062_-	NA|495aa|up_9|CP035280.1_2618741_2620226_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|186aa|up_8|CP035280.1_2620378_2620936_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|350aa|up_7|CP035280.1_2620992_2622042_-	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|288aa|up_6|CP035280.1_2622068_2622932_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|504aa|up_5|CP035280.1_2623352_2624864_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|357aa|up_4|CP035280.1_2624881_2625952_-	sd00006, TPR, Tetratricopeptide repeat	NA|578aa|up_3|CP035280.1_2626075_2627809_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|195aa|up_2|CP035280.1_2627904_2628489_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|497aa|up_1|CP035280.1_2628686_2630177_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|325aa|up_0|CP035280.1_2630812_2631787_+	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|279aa|down_0|CP035280.1_2632225_2633062_-	NA	NA|192aa|down_1|CP035280.1_2633153_2633729_-	PRK06853, PRK06853, indolepyruvate oxidoreductase subunit beta; Reviewed	NA|587aa|down_2|CP035280.1_2633730_2635491_-	TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase, alpha subunit	NA|300aa|down_3|CP035280.1_2635516_2636416_-	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|477aa|down_4|CP035280.1_2636436_2637867_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|338aa|down_5|CP035280.1_2638004_2639018_-	cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes	NA|153aa|down_6|CP035280.1_2639043_2639502_-	pfam04463, DUF523, Protein of unknown function (DUF523)	NA|787aa|down_7|CP035280.1_2639527_2641888_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|784aa|down_8|CP035280.1_2641891_2644243_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|332aa|down_9|CP035280.1_2644313_2645309_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase
GCA_004103695.1_ASM410369v1	CP035280	Clostridium sp. JN-9 chromosome, complete genome	5	2913615-2913694	5	CRISPRCasFinder	no		RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	Orphan	TTGGGGACGGTTCATTTAAAATGCAA	26	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,WYL,DEDDh,cas14j,DinG	NA|131aa|up_4|CP035280.1_2907662_2908055_+,NA	NA|280aa|up_9|CP035280.1_2902867_2903707_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|494aa|up_8|CP035280.1_2903743_2905225_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|226aa|up_7|CP035280.1_2905221_2905899_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|214aa|up_6|CP035280.1_2906364_2907006_-	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|140aa|up_5|CP035280.1_2907183_2907603_+	pfam12953, DUF3842, Domain of unknown function (DUF3842)	NA|131aa|up_4|CP035280.1_2907662_2908055_+	NA	NA|196aa|up_3|CP035280.1_2908102_2908690_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|217aa|up_2|CP035280.1_2908969_2909620_+	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|933aa|up_1|CP035280.1_2909656_2912455_-	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins	NA|134aa|up_0|CP035280.1_2913103_2913505_-	pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain	NA|252aa|down_0|CP035280.1_2914179_2914935_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|306aa|down_1|CP035280.1_2915026_2915944_-	cd01017, AdcA, Metal binding protein AdcA	NA|610aa|down_2|CP035280.1_2916180_2918010_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|601aa|down_3|CP035280.1_2918031_2919834_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|321aa|down_4|CP035280.1_2920621_2921584_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|265aa|down_5|CP035280.1_2921757_2922552_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|219aa|down_6|CP035280.1_2922597_2923254_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|322aa|down_7|CP035280.1_2923246_2924212_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|403aa|down_8|CP035280.1_2924602_2925811_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|461aa|down_9|CP035280.1_2926103_2927486_-	pfam01609, DDE_Tnp_1, Transposase DDE domain
