assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004102605.1_ASM410260v1	CP035151	Pediococcus acidilactici strain SRCM103367 chromosome, complete genome	1	417255-418478	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Type II-B,Type II-A,Type II-C	GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	36,36,36	0	0	NA	NA	NA:NA:NA	18,18,11	18	TypeII-B,TypeII-A,TypeII-C	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA,NA	NA|182aa|up_9|CP035151.1_400896_401442_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|641aa|up_8|CP035151.1_401428_403351_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|518aa|up_7|CP035151.1_403423_404977_+	PRK00074, guaA, GMP synthase; Reviewed	NA|215aa|up_6|CP035151.1_405260_405905_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|845aa|up_5|CP035151.1_407538_410073_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|192aa|up_4|CP035151.1_410300_410876_-	pfam10351, Apt1, Golgi-body localization protein domain	cas9|1365aa|up_3|CP035151.1_411059_415154_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|CP035151.1_415369_416275_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|CP035151.1_416252_416558_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|CP035151.1_416554_417226_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|84aa|down_0|CP035151.1_418772_419024_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|46aa|down_1|CP035151.1_419117_419255_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|216aa|down_2|CP035151.1_420263_420911_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_3|CP035151.1_421100_421385_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_4|CP035151.1_421407_423030_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_5|CP035151.1_423329_425162_+	pfam13520, AA_permease_2, Amino acid permease	NA|392aa|down_6|CP035151.1_425383_426559_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|213aa|down_7|CP035151.1_426626_427265_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|440aa|down_8|CP035151.1_427296_428616_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|129aa|down_9|CP035151.1_428900_429287_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]
GCA_004102605.1_ASM410260v1	CP035151	Pediococcus acidilactici strain SRCM103367 chromosome, complete genome	2	616330-616433	2	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|85aa|up_9|CP035151.1_599718_599973_+,NA|63aa|up_6|CP035151.1_604215_604404_+,NA|244aa|down_0|CP035151.1_618350_619082_-	NA|85aa|up_9|CP035151.1_599718_599973_+	NA	NA|326aa|up_8|CP035151.1_600591_601569_+	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|736aa|up_7|CP035151.1_601792_604000_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|CP035151.1_604215_604404_+	NA	NA|89aa|up_5|CP035151.1_604546_604813_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|CP035151.1_604812_606537_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|CP035151.1_606609_607383_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|396aa|up_2|CP035151.1_607468_608656_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|CP035151.1_608686_609703_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|335aa|up_0|CP035151.1_609748_610753_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|244aa|down_0|CP035151.1_618350_619082_-	NA	NA|397aa|down_1|CP035151.1_619253_620444_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|490aa|down_2|CP035151.1_620619_622089_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|188aa|down_3|CP035151.1_622168_622732_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|212aa|down_4|CP035151.1_622724_623360_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_5|CP035151.1_623765_626183_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|561aa|down_6|CP035151.1_626439_628122_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_7|CP035151.1_628132_628852_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|277aa|down_8|CP035151.1_628958_629789_-	cd01171, YXKO-related, B	NA|154aa|down_9|CP035151.1_629914_630376_+	pfam00582, Usp, Universal stress protein family
GCA_004102605.1_ASM410260v1	CP035151	Pediococcus acidilactici strain SRCM103367 chromosome, complete genome	3	1348442-1348602	2	PILER-CR	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	ATCTCTTCGTCGCCTAGCTCCTCGACATTACTGTGACGCTC	41	0	0	NA	NA	NA	2	2	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA,NA	NA|121aa|up_9|CP035151.1_1338303_1338666_-	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|282aa|up_8|CP035151.1_1338666_1339512_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|723aa|up_7|CP035151.1_1339676_1341845_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|523aa|up_6|CP035151.1_1341948_1343517_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|135aa|up_5|CP035151.1_1343583_1343988_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|377aa|up_4|CP035151.1_1344063_1345194_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|185aa|up_3|CP035151.1_1345274_1345829_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|272aa|up_2|CP035151.1_1345921_1346737_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|153aa|up_1|CP035151.1_1346789_1347248_+	PRK07308, PRK07308, flavodoxin; Validated	NA|209aa|up_0|CP035151.1_1347449_1348076_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|332aa|down_0|CP035151.1_1350214_1351210_-	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|476aa|down_1|CP035151.1_1351237_1352665_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|487aa|down_2|CP035151.1_1352664_1354125_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|105aa|down_3|CP035151.1_1354124_1354439_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|386aa|down_4|CP035151.1_1354458_1355616_-	pfam07537, CamS, CamS sex pheromone cAM373 precursor	NA|757aa|down_5|CP035151.1_1355691_1357962_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|380aa|down_6|CP035151.1_1358052_1359192_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|191aa|down_7|CP035151.1_1359225_1359798_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|214aa|down_8|CP035151.1_1359819_1360461_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|203aa|down_9|CP035151.1_1360561_1361170_-	COG4684, COG4684, Predicted membrane protein [Function unknown]
