The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP035187	Listeria monocytogenes strain N16-0044 chromosome, complete genome	2908718	129412	135939	2908718	tail	Listeria_phage(33.33%)	10	NA	NA
QAS35335.1|129412_129865_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
QAS35336.1|129870_130206_-	XRE family transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
QAS35337.1|130422_130851_+	hypothetical protein	NA	NA	NA	NA	NA
QAS35338.1|130862_131279_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.3e-20
QAS35339.1|131558_131948_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
QAS35340.1|131960_132473_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
QAS35341.1|132520_132823_+	segregation and condensation protein B	NA	NA	NA	NA	NA
QAS35342.1|132864_133269_+	phenylalanine racemase	NA	NA	NA	NA	NA
QAS35343.1|133255_135124_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	2.0e-20
QAS35344.1|135120_135939_+|tail	phage tail family protein	tail	A0A2H4JAE4	uncultured_Caudovirales_phage	34.9	1.7e-40
>prophage 2
CP035187	Listeria monocytogenes strain N16-0044 chromosome, complete genome	2908718	1123248	1130174	2908718	integrase	Bacillus_virus(33.33%)	8	1112659:1112672	1130753:1130766
1112659:1112672	attL	AGAAGCGGGAATAA	NA	NA	NA	NA
QAS36255.1|1123248_1124739_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.5	2.8e-113
QAS36256.1|1124750_1125575_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
QAS36257.1|1125587_1125896_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
QAS36258.1|1125955_1126360_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
QAS36259.1|1126488_1128045_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
QAS36260.1|1128243_1128723_-	XRE family transcriptional regulator	NA	A0A2H4JDE4	uncultured_Caudovirales_phage	34.3	7.3e-07
QAS36261.1|1128900_1129098_+	LysR family transcriptional regulator	NA	Q8SBM7	Clostridium_phage	46.3	1.5e-06
QAS36262.1|1129100_1130174_+|integrase	site-specific integrase	integrase	A0A0A8WF08	Clostridium_phage	46.5	5.5e-87
1130753:1130766	attR	AGAAGCGGGAATAA	NA	NA	NA	NA
>prophage 3
CP035187	Listeria monocytogenes strain N16-0044 chromosome, complete genome	2908718	1256419	1299215	2908718	tRNA,protease,integrase	Streptococcus_phage(18.18%)	44	1256382:1256402	1258042:1258062
1256382:1256402	attL	ATGTTTTAGAGATTTTTTTAT	NA	NA	NA	NA
QAS36402.1|1256419_1256521_-|integrase	integrase	integrase	A0A059T688	Listeria_phage	66.7	2.4e-05
QAS36403.1|1256917_1257391_+	hypothetical protein	NA	NA	NA	NA	NA
QAS36404.1|1257496_1257859_+	hypothetical protein	NA	NA	NA	NA	NA
QAS36405.1|1261896_1263255_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1258042:1258062	attR	ATGTTTTAGAGATTTTTTTAT	NA	NA	NA	NA
QAS36406.1|1263297_1263891_-	hypothetical protein	NA	NA	NA	NA	NA
QAS36407.1|1264027_1264435_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
QAS36408.1|1264599_1265199_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	1.3e-29
QAS36409.1|1265230_1265491_-	hypothetical protein	NA	NA	NA	NA	NA
QAS36410.1|1265614_1267027_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	4.9e-51
QAS36411.1|1267051_1267315_+	DUF3116 domain-containing protein	NA	NA	NA	NA	NA
QAS36412.1|1267482_1267959_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
QAS36413.1|1267996_1268242_-	hypothetical protein	NA	NA	NA	NA	NA
QAS36414.1|1268238_1269444_-	MFS transporter	NA	NA	NA	NA	NA
QAS36415.1|1269464_1269650_-	hypothetical protein	NA	NA	NA	NA	NA
QAS36416.1|1269648_1270308_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
QAS36417.1|1270347_1270542_-	hypothetical protein	NA	NA	NA	NA	NA
QAS36418.1|1270608_1271457_-	YitT family protein	NA	NA	NA	NA	NA
QAS36419.1|1272074_1272788_+	trehalose operon repressor	NA	NA	NA	NA	NA
QAS36420.1|1272818_1274465_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
QAS36421.1|1274483_1275968_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
QAS36422.1|1276085_1276547_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
QAS36423.1|1276585_1277050_-	hypothetical protein	NA	NA	NA	NA	NA
QAS36424.1|1277238_1278153_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
QAS36425.1|1278178_1279426_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	2.7e-106
QAS36426.1|1279409_1280240_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	3.6e-46
QAS36427.1|1280386_1281526_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAS36428.1|1281605_1282001_-	XRE family transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
QAS36429.1|1282151_1282367_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAS36430.1|1282490_1283024_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
QAS36431.1|1283039_1283705_+	hypothetical protein	NA	NA	NA	NA	NA
QAS36432.1|1283966_1284905_+	hypothetical protein	NA	NA	NA	NA	NA
QAS36433.1|1285019_1286303_+	trigger factor	NA	NA	NA	NA	NA
QAS36434.1|1286487_1287747_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
QAS36435.1|1287865_1288432_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
QAS36436.1|1288466_1289036_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
QAS36437.1|1289137_1289680_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
QAS36438.1|1289689_1290553_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
QAS36439.1|1290549_1291335_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
QAS36440.1|1291468_1292329_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
QAS36441.1|1292601_1294680_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
QAS36442.1|1294742_1296047_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
QAS36443.1|1296329_1297232_+	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
QAS36444.1|1297252_1297792_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
QAS36445.1|1297805_1299215_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
>prophage 4
CP035187	Listeria monocytogenes strain N16-0044 chromosome, complete genome	2908718	1828340	1836626	2908718		Synechococcus_phage(33.33%)	8	NA	NA
QAS36923.1|1828340_1828907_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
QAS36924.1|1828903_1829953_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
QAS36925.1|1829971_1831399_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
QAS36926.1|1831383_1833603_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.7	2.5e-158
QAS36927.1|1833595_1834279_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
QAS36928.1|1834282_1834528_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QAS36929.1|1834539_1835253_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.0e-40
QAS36930.1|1835333_1836626_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 5
CP035187	Listeria monocytogenes strain N16-0044 chromosome, complete genome	2908718	2507879	2515724	2908718		Streptococcus_phage(50.0%)	7	NA	NA
QAS37538.1|2507879_2508851_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
QAS37539.1|2508858_2509827_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	3.9e-68
QAS37540.1|2509828_2510704_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
QAS37541.1|2510811_2512542_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.1	9.5e-174
QAS37542.1|2512583_2513645_-	galactose mutarotase	NA	NA	NA	NA	NA
QAS37543.1|2513661_2514645_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
QAS37544.1|2514764_2515724_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
