assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004101585.1_ASM410158v1	CP035154	Pediococcus acidilactici strain SRCM103387 chromosome, complete genome	2	472999-474222	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Type II-C,Type II-B,Type II-A	GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	36,36,36	0	0	NA	NA	NA:NA:NA	14,17,18	18	TypeII-C,TypeII-B,TypeII-A	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|89aa|up_8|CP035154.1_459767_460034_+,NA	NA|374aa|up_9|CP035154.1_458537_459659_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|89aa|up_8|CP035154.1_459767_460034_+	NA	NA|215aa|up_7|CP035154.1_461024_461669_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|470aa|up_6|CP035154.1_461861_463271_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_5|CP035154.1_463297_465832_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|194aa|up_4|CP035154.1_466059_466641_-	pfam10351, Apt1, Golgi-body localization protein domain	cas9|1358aa|up_3|CP035154.1_466824_470898_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|CP035154.1_471113_472019_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|CP035154.1_471996_472302_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|CP035154.1_472298_472970_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|216aa|down_0|CP035154.1_475673_476321_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|CP035154.1_476510_476795_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|CP035154.1_476817_478440_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|CP035154.1_478739_480572_+	pfam13520, AA_permease_2, Amino acid permease	NA|392aa|down_4|CP035154.1_480793_481969_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|213aa|down_5|CP035154.1_482036_482675_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|440aa|down_6|CP035154.1_482706_484026_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|129aa|down_7|CP035154.1_484310_484697_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|CP035154.1_484825_485380_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|788aa|down_9|CP035154.1_485528_487892_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCA_004101585.1_ASM410158v1	CP035154	Pediococcus acidilactici strain SRCM103387 chromosome, complete genome	3	718983-719086	2	CRISPRCasFinder	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|84aa|up_9|CP035154.1_701885_702137_+,NA|63aa|up_6|CP035154.1_706868_707057_+,NA|244aa|down_0|CP035154.1_721003_721735_-	NA|84aa|up_9|CP035154.1_701885_702137_+	NA	NA|326aa|up_8|CP035154.1_703243_704221_+	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|736aa|up_7|CP035154.1_704445_706653_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|CP035154.1_706868_707057_+	NA	NA|89aa|up_5|CP035154.1_707199_707466_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|CP035154.1_707465_709190_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|CP035154.1_709262_710036_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|396aa|up_2|CP035154.1_710121_711309_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|CP035154.1_711339_712356_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|335aa|up_0|CP035154.1_712402_713407_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|244aa|down_0|CP035154.1_721003_721735_-	NA	NA|397aa|down_1|CP035154.1_721906_723097_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|490aa|down_2|CP035154.1_723272_724742_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|188aa|down_3|CP035154.1_724821_725385_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|212aa|down_4|CP035154.1_725377_726013_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_5|CP035154.1_726418_728836_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|561aa|down_6|CP035154.1_729092_730775_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_7|CP035154.1_730785_731505_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|277aa|down_8|CP035154.1_731611_732442_-	cd01171, YXKO-related, B	NA|154aa|down_9|CP035154.1_732567_733029_+	pfam00582, Usp, Universal stress protein family
GCA_004101585.1_ASM410158v1	CP035154	Pediococcus acidilactici strain SRCM103387 chromosome, complete genome	4	1471724-1471880	2	PILER-CR	no		csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	ATCTCTTCGTCGCCTAGCTCCTCGACATTACTGTGAC	37	0	0	NA	NA	NA	2	2	Orphan	csa3,cas9,cas1,cas2,csn2,DEDDh,DinG,cas3	NA,NA	NA|121aa|up_9|CP035154.1_1461585_1461948_-	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|282aa|up_8|CP035154.1_1461948_1462794_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|723aa|up_7|CP035154.1_1462958_1465127_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|523aa|up_6|CP035154.1_1465230_1466799_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|135aa|up_5|CP035154.1_1466865_1467270_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|377aa|up_4|CP035154.1_1467345_1468476_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|185aa|up_3|CP035154.1_1468556_1469111_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|272aa|up_2|CP035154.1_1469203_1470019_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|153aa|up_1|CP035154.1_1470071_1470530_+	PRK07308, PRK07308, flavodoxin; Validated	NA|209aa|up_0|CP035154.1_1470732_1471359_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|332aa|down_0|CP035154.1_1473496_1474492_-	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|476aa|down_1|CP035154.1_1474519_1475947_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|487aa|down_2|CP035154.1_1475946_1477407_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|105aa|down_3|CP035154.1_1477406_1477721_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|386aa|down_4|CP035154.1_1477740_1478898_-	pfam07537, CamS, CamS sex pheromone cAM373 precursor	NA|758aa|down_5|CP035154.1_1478973_1481247_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|380aa|down_6|CP035154.1_1481337_1482477_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|191aa|down_7|CP035154.1_1482510_1483083_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|214aa|down_8|CP035154.1_1483104_1483746_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|203aa|down_9|CP035154.1_1483846_1484455_-	COG4684, COG4684, Predicted membrane protein [Function unknown]
