assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	1	668728-668845	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|CP035123.1_668918_669083_-	NA|115aa|up_9|CP035123.1_656449_656794_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|CP035123.1_656982_657921_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|CP035123.1_658019_659009_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|CP035123.1_659030_660362_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|CP035123.1_660387_661596_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|CP035123.1_661629_663924_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|CP035123.1_663937_664327_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|CP035123.1_664398_665763_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|CP035123.1_666037_667369_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|CP035123.1_667396_668707_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|CP035123.1_668918_669083_-	NA	NA|234aa|down_1|CP035123.1_669105_669807_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|CP035123.1_669911_670808_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|CP035123.1_670858_671215_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|CP035123.1_671456_671822_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|161aa|down_5|CP035123.1_673947_674430_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_6|CP035123.1_674525_674825_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_7|CP035123.1_674814_675219_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_8|CP035123.1_675221_675527_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|123aa|down_9|CP035123.1_675564_675933_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	2	1042955-1043471	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|CP035123.1_1041664_1041805_-,NA	NA|434aa|up_9|CP035123.1_1032361_1033663_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|CP035123.1_1033710_1035945_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|CP035123.1_1036022_1036271_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|CP035123.1_1036270_1036606_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|CP035123.1_1036676_1037468_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|CP035123.1_1037695_1039333_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|CP035123.1_1039420_1040719_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|CP035123.1_1040778_1041651_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|CP035123.1_1041664_1041805_-	NA	NA|224aa|up_0|CP035123.1_1041943_1042615_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|426aa|down_0|CP035123.1_1045612_1046890_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_1|CP035123.1_1047208_1047994_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|CP035123.1_1048063_1049518_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_3|CP035123.1_1049611_1050949_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|CP035123.1_1050926_1051706_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|CP035123.1_1051702_1052563_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|CP035123.1_1052710_1053286_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|CP035123.1_1053302_1053563_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|CP035123.1_1053553_1054825_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|CP035123.1_1054902_1055268_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	3	1065855-1066494	3,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,28,29	0	0	NA	NA	I-E:I-E:I-E	9,9,10	10	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|CP035123.1_1053553_1054825_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|CP035123.1_1054902_1055268_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|CP035123.1_1055583_1057383_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|CP035123.1_1057382_1059095_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|CP035123.1_1059168_1059903_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|CP035123.1_1060167_1060320_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|CP035123.1_1063170_1063917_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP035123.1_1063898_1064549_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|CP035123.1_1064545_1065469_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP035123.1_1065465_1065759_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|CP035123.1_1066514_1067552_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP035123.1_1067803_1068712_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|CP035123.1_1068713_1070141_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP035123.1_1070140_1070746_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|CP035123.1_1070795_1071119_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP035123.1_1071312_1071624_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP035123.1_1071642_1072353_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP035123.1_1072352_1072832_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP035123.1_1072828_1073878_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP035123.1_1073858_1074620_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	4	1567752-1567869	4	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_3|CP035123.1_1562832_1563147_-,NA	NA|300aa|up_9|CP035123.1_1554745_1555645_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|CP035123.1_1555837_1557028_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|CP035123.1_1557024_1558284_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|CP035123.1_1558273_1559902_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|CP035123.1_1560174_1561533_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|CP035123.1_1561537_1562614_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|CP035123.1_1562832_1563147_-	NA	NA|217aa|up_2|CP035123.1_1565566_1566217_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|CP035123.1_1566270_1566525_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|CP035123.1_1566524_1567655_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|CP035123.1_1567888_1570174_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|CP035123.1_1570869_1574622_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|CP035123.1_1574749_1575472_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|CP035123.1_1575618_1578246_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|CP035123.1_1578394_1580083_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|CP035123.1_1580079_1580703_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|CP035123.1_1580846_1585241_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|CP035123.1_1585241_1586891_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|CP035123.1_1586895_1587672_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|CP035123.1_1587745_1588930_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	5	2256213-2256336	5	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|CP035123.1_2265232_2265322_+	NA|471aa|up_9|CP035123.1_2245667_2247080_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|CP035123.1_2247635_2247845_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|CP035123.1_2248300_2248927_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|CP035123.1_2248947_2251050_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|CP035123.1_2251053_2251701_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|CP035123.1_2251764_2252433_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|CP035123.1_2252429_2253215_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|CP035123.1_2253218_2254031_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|CP035123.1_2254042_2255647_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|CP035123.1_2255772_2256078_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|CP035123.1_2256650_2257907_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|CP035123.1_2257947_2259321_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|CP035123.1_2259535_2260177_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|CP035123.1_2260216_2261365_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|CP035123.1_2261655_2262867_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|CP035123.1_2262979_2263912_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|CP035123.1_2263908_2264934_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|CP035123.1_2265232_2265322_+	NA	NA|390aa|down_8|CP035123.1_2265487_2266657_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|CP035123.1_2266802_2267384_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	7	3218911-3219055	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_7|CP035123.1_3214296_3214578_+,NA|201aa|up_5|CP035123.1_3215108_3215711_-,NA|62aa|up_4|CP035123.1_3215835_3216021_-,NA|56aa|up_3|CP035123.1_3215953_3216121_+,NA	NA|61aa|up_9|CP035123.1_3213939_3214122_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|CP035123.1_3214094_3214286_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|CP035123.1_3214296_3214578_+	NA	NA|74aa|up_6|CP035123.1_3214676_3214898_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_5|CP035123.1_3215108_3215711_-	NA	NA|62aa|up_4|CP035123.1_3215835_3216021_-	NA	NA|56aa|up_3|CP035123.1_3215953_3216121_+	NA	NA|73aa|up_2|CP035123.1_3216160_3216379_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|CP035123.1_3216356_3217427_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|CP035123.1_3217561_3218845_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|CP035123.1_3219078_3221340_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|CP035123.1_3221522_3222956_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|CP035123.1_3223031_3224084_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|CP035123.1_3224267_3225221_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|CP035123.1_3225261_3226257_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|CP035123.1_3226411_3227230_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|CP035123.1_3227230_3228289_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|CP035123.1_3228291_3228981_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|CP035123.1_3228980_3229754_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|CP035123.1_3229920_3230070_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	8	3741818-3741971	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|150aa|down_8|CP035123.1_3751548_3751998_-	NA|352aa|up_9|CP035123.1_3731643_3732699_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|CP035123.1_3732737_3733139_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|CP035123.1_3733196_3734441_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|CP035123.1_3734532_3734991_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|CP035123.1_3735251_3736709_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|CP035123.1_3737065_3737332_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|CP035123.1_3737638_3738091_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|CP035123.1_3738087_3739143_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_1|CP035123.1_3739213_3739984_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|CP035123.1_3739943_3741683_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|CP035123.1_3742000_3742498_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|CP035123.1_3742673_3743432_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|CP035123.1_3743723_3744464_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|CP035123.1_3744434_3745202_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|CP035123.1_3745407_3745986_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|CP035123.1_3746225_3748670_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|CP035123.1_3748712_3749186_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|CP035123.1_3749339_3750110_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|CP035123.1_3751548_3751998_-	NA	NA|1020aa|down_9|CP035123.1_3752009_3755069_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	9	3930022-3930137	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|CP035123.1_3918037_3919216_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|CP035123.1_3919317_3919449_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|CP035123.1_3919537_3921193_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|CP035123.1_3921356_3922340_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|CP035123.1_3922315_3923926_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|CP035123.1_3923909_3924608_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|CP035123.1_3924721_3925486_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|CP035123.1_3925571_3926450_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|CP035123.1_3926788_3928489_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|CP035123.1_3928499_3930002_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|CP035123.1_3930201_3930897_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|CP035123.1_3930971_3933323_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|CP035123.1_3933487_3936394_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|CP035123.1_3936405_3937065_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|CP035123.1_3937181_3937997_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|CP035123.1_3938251_3940606_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|CP035123.1_3940658_3941945_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|CP035123.1_3941944_3942934_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|CP035123.1_3942930_3943752_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|CP035123.1_3943754_3944132_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCA_004088295.1_ASM408829v1	CP035123	Escherichia coli strain EC25 chromosome, complete genome	10	3953050-3953182	3	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|CP035123.1_3943754_3944132_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|CP035123.1_3944138_3944981_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|CP035123.1_3945058_3945538_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|CP035123.1_3945729_3947592_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|CP035123.1_3947584_3948115_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|CP035123.1_3948222_3949554_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|CP035123.1_3949611_3949899_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|CP035123.1_3949895_3951182_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|CP035123.1_3951232_3952174_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|CP035123.1_3952188_3952959_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|CP035123.1_3953432_3954947_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|CP035123.1_3954977_3956120_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|CP035123.1_3956248_3957466_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|CP035123.1_3957539_3959093_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|CP035123.1_3959201_3959987_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|CP035123.1_3959992_3960583_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|CP035123.1_3960668_3961064_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|CP035123.1_3961324_3964546_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|CP035123.1_3964563_3965712_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|CP035123.1_3966167_3966989_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
