The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	565150	620732	4913154	portal,holin,transposase,terminase,integrase,tRNA,head,tail,capsid	Salmonella_phage(32.65%)	64	560036:560055	609133:609152
560036:560055	attL	ATTGAGGGAGTTTTGATAAA	NA	NA	NA	NA
QAA83814.1|565150_565444_-	hypothetical protein	NA	B6SD57	Bacteriophage	53.5	1.7e-19
QAA83815.1|565408_566479_+	ParB/RepB/Spo0J family plasmid partition protein	NA	Q7Y3Y7	Yersinia_phage	60.4	1.1e-116
QAA83816.1|566609_566918_-	hypothetical protein	NA	K7PGV5	Enterobacterial_phage	55.1	8.4e-25
QAA87670.1|566920_567163_-	DNA polymerase V	NA	I6PD82	Cronobacter_phage	57.0	1.3e-20
QAA83817.1|567217_567454_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	5.5e-08
QAA83818.1|568016_568535_-|tail	phage tail protein	tail	A0A1S6KZY8	Salmonella_phage	63.4	2.9e-46
QAA83819.1|568549_571228_-	shikimate transporter	NA	A0A1B0VFW4	Salmonella_phage	67.1	6.2e-156
QAA83820.1|571281_571524_-	hypothetical protein	NA	NA	NA	NA	NA
QAA83821.1|571562_574925_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	80.1	0.0e+00
QAA83822.1|574986_575634_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	77.7	2.1e-89
QAA83823.1|576274_576973_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.4	3.5e-103
QAA83824.1|576982_577312_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	70.4	1.3e-42
QAA83825.1|580380_580719_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAA83826.1|580715_581111_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
QAA83827.1|581914_582316_-|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAA83828.1|583648_584179_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	79.5	2.0e-74
QAA83829.1|584206_584590_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	9.2e-29
QAA83830.1|584600_584960_-	DNA packaging protein	NA	NA	NA	NA	NA
QAA83831.1|585017_586046_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
QAA83832.1|586100_586448_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAA83833.1|586460_587957_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	8.1e-97
QAA83834.1|587946_589527_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.6	6.9e-187
QAA83835.1|589523_589727_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
QAA83836.1|589710_591642_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	6.3e-259
QAA83837.1|591613_592159_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
QAA83838.1|592418_592922_-	hypothetical protein	NA	NA	NA	NA	NA
QAA83839.1|593024_593567_-	DUF2514 family protein	NA	NA	NA	NA	NA
QAA83840.1|593563_594178_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	91.7	2.3e-106
QAA83841.1|594177_594459_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
QAA83842.1|594445_594835_-	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	72.5	4.8e-41
QAA83843.1|595335_595755_-	hypothetical protein	NA	A0A291AWZ9	Escherichia_phage	75.5	6.0e-58
QAA83844.1|595980_596559_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	57.2	7.1e-49
QAA83845.1|596573_597563_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	98.8	1.5e-192
QAA83846.1|597570_598431_-	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	99.0	4.6e-161
QAA83847.1|598447_598837_-	RusA family crossover junction endodeoxyribonuclease	NA	K7PH72	Enterobacteria_phage	86.8	4.2e-61
QAA83848.1|598833_599487_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	88.4	1.6e-113
QAA83849.1|599486_599969_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	97.5	1.1e-84
QAA83850.1|599970_600789_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	97.4	9.5e-132
QAA83851.1|600785_601010_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QAA83852.1|602521_602851_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A088CBP5	Shigella_phage	90.8	2.6e-40
QAA83853.1|602840_603149_+	XRE family transcriptional regulator	NA	A0A088CD40	Shigella_phage	93.1	2.5e-45
QAA83854.1|603167_603344_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	94.6	4.6e-28
QAA83855.1|603483_604038_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
QAA83856.1|604066_604291_-	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
QAA83857.1|604229_604415_-	amino acid permease	NA	NA	NA	NA	NA
QAA83858.1|604388_605084_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	4.6e-127
QAA83859.1|605418_605616_-	hypothetical protein	NA	NA	NA	NA	NA
QAA83860.1|605567_606053_-	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	87.3	8.3e-27
QAA83861.1|605988_606177_+	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	93.4	2.1e-26
QAA83862.1|606173_606530_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	2.5e-60
QAA83863.1|606587_607415_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	98.5	5.4e-151
QAA83864.1|607778_608024_+	excisionase	NA	NA	NA	NA	NA
QAA83865.1|608004_609132_+|integrase	integrase	integrase	O21925	Phage_21	59.2	1.2e-121
QAA83866.1|609243_610494_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
609133:609152	attR	ATTGAGGGAGTTTTGATAAA	NA	NA	NA	NA
QAA83867.1|610665_611331_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
QAA83868.1|611327_611657_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
QAA83869.1|611668_612130_+	NUDIX hydrolase	NA	NA	NA	NA	NA
QAA83870.1|612183_613290_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
QAA83871.1|613376_614018_+	lysogenization regulator HflD	NA	NA	NA	NA	NA
QAA83872.1|614021_615392_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	8.5e-109
QAA83873.1|615515_616190_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
QAA83874.1|617732_618854_+	cupin domain-containing protein	NA	NA	NA	NA	NA
QAA83875.1|618893_620183_-	hypothetical protein	NA	NA	NA	NA	NA
QAA83876.1|620273_620732_-|transposase	IS200/IS605-like element IS200F family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.0e-13
>prophage 2
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	759171	843891	4913154	protease,portal,holin,lysis,terminase,tRNA,tail	Salmonella_phage(44.44%)	93	NA	NA
QAA84016.1|759171_759852_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	70.6	8.3e-81
QAA84017.1|760472_761132_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	51.9	2.3e-43
QAA84018.1|761218_761548_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
QAA84019.1|761544_761826_-	acylphosphatase	NA	NA	NA	NA	NA
QAA84020.1|761874_762654_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
QAA84021.1|762679_763228_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
QAA84022.1|763442_764654_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
QAA84023.1|764711_765029_+	heat shock protein HspQ	NA	NA	NA	NA	NA
QAA84024.1|765073_765490_-	CoA-binding protein	NA	NA	NA	NA	NA
QAA84025.1|765660_766323_+	DUF2057 family protein	NA	NA	NA	NA	NA
QAA84026.1|766417_766876_+	methylglyoxal synthase	NA	NA	NA	NA	NA
QAA84027.1|766911_768966_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
QAA84028.1|769089_769536_+	YccF domain-containing protein	NA	NA	NA	NA	NA
QAA84029.1|769554_771708_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
QAA84030.1|771694_772300_-	TfoX family DNA transformation protein	NA	NA	NA	NA	NA
QAA84031.1|772516_773026_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
QAA84032.1|773382_774435_+	porin OmpA	NA	NA	NA	NA	NA
QAA84033.1|774506_774959_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
QAA84034.1|775144_776905_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
QAA84035.1|776973_777492_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
QAA84036.1|777591_777759_-	ribosome modulation factor	NA	NA	NA	NA	NA
QAA84037.1|778014_778578_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
QAA84038.1|778574_780215_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
QAA84039.1|780219_781473_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
QAA84040.1|781487_783395_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
QAA84041.1|783407_785516_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
QAA84042.1|785614_786724_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
QAA84043.1|786720_787263_-	cell division protein ZapC	NA	NA	NA	NA	NA
QAA84044.1|787428_788439_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
QAA84045.1|788646_791259_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
QAA87674.1|791685_791877_+	DinI family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
QAA84046.1|792147_792834_+	virulence protein	NA	NA	NA	NA	NA
QAA84047.1|792818_793118_+	hypothetical protein	NA	NA	NA	NA	NA
QAA84048.1|793186_793813_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
QAA84049.1|794460_795429_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.7	7.9e-194
QAA84050.1|795904_796486_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
QAA84051.1|796485_798924_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.4	2.9e-91
QAA84052.1|798977_799220_-	hypothetical protein	NA	NA	NA	NA	NA
QAA84053.1|799258_802609_-	host specificity protein J	NA	A0A0K2FI38	Escherichia_phage	68.5	0.0e+00
QAA84054.1|802680_803385_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	62.6	9.2e-67
QAA84055.1|803282_804020_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
QAA84056.1|804029_804725_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
QAA84057.1|804814_805348_+	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
QAA84058.1|805464_805962_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
QAA84059.1|806060_806393_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	3.3e-35
QAA87675.1|806389_809377_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	62.1	8.2e-266
QAA84060.1|809456_809786_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
QAA84061.1|809782_810181_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
QAA84062.1|810226_810976_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
QAA84063.1|810987_811389_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	1.5e-42
QAA84064.1|811385_811952_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	97.8	9.5e-14
QAA84065.1|811932_812232_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
QAA84066.1|812224_812548_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	61.3	7.7e-29
QAA87677.1|812638_814720_-|protease	Clp protease ClpP	protease	A0A291AWT6	Escherichia_phage	69.5	4.8e-265
QAA87676.1|814643_816161_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	65.1	1.5e-175
QAA84067.1|816187_816394_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
QAA87678.1|816390_818529_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.6	3.4e-290
QAA84068.1|818485_819019_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	48.1	1.0e-33
QAA84069.1|819226_819706_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
QAA84070.1|819723_820176_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	96.6	5.1e-79
QAA87679.1|820159_820489_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAA84071.1|820764_821451_+|protease	type III secretion system effector protease GtgA	protease	Q9MBM0	Phage_Gifsy-2	100.0	2.1e-132
QAA84072.1|821811_822261_+	hypothetical protein	NA	NA	NA	NA	NA
QAA84073.1|822396_822522_-	hypothetical protein	NA	NA	NA	NA	NA
QAA87680.1|822695_822914_-	hypothetical protein	NA	NA	NA	NA	NA
QAA84074.1|823078_823876_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	2.3e-151
QAA84075.1|823865_824012_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
QAA84076.1|824008_824620_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	91.6	6.9e-79
QAA87681.1|824622_824829_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
QAA84077.1|824828_825431_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	8.3e-109
QAA84078.1|825513_825735_-	hypothetical protein	NA	NA	NA	NA	NA
QAA84079.1|825846_826080_-	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
QAA84080.1|826371_826662_-	hypothetical protein	NA	NA	NA	NA	NA
QAA84081.1|826739_827051_-	ead/Ea22-like family protein	NA	A0A220NQV2	Salmonella_phage	97.2	7.2e-32
QAA84082.1|827047_827395_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	89.6	5.4e-52
QAA84083.1|827405_828155_-	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.6	3.6e-138
QAA84084.1|828157_829141_-	hypothetical protein	NA	H6WRX7	Salmonella_phage	99.7	9.6e-163
QAA84085.1|829225_829600_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
QAA84086.1|829565_829805_-	helix-turn-helix domain-containing protein	NA	H6WRX5	Salmonella_phage	47.2	8.3e-12
QAA87682.1|829924_830335_+	helix-turn-helix domain-containing protein	NA	A0A1B5FPF4	Escherichia_phage	42.4	8.1e-07
QAA84087.1|830384_830645_+	hypothetical protein	NA	NA	NA	NA	NA
QAA84088.1|830637_830796_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	1.2e-22
QAA84089.1|830817_831117_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	83.6	2.4e-48
QAA84090.1|834076_835234_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
QAA84091.1|835276_835516_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAA84092.1|835556_835805_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
QAA84093.1|835849_837142_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.0e-252
QAA84094.1|837336_838539_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
QAA84095.1|838616_840053_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
QAA84096.1|840297_841512_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
QAA84097.1|841598_841832_+	hypothetical protein	NA	NA	NA	NA	NA
QAA84098.1|841828_842290_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
QAA84099.1|842490_843891_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
>prophage 3
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	908021	916752	4913154	transposase,protease	Enterobacteria_phage(16.67%)	8	NA	NA
QAA84148.1|908021_909276_+|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	5.4e-17
QAA87683.1|909291_909567_-	hypothetical protein	NA	NA	NA	NA	NA
QAA84149.1|910153_910336_-	hypothetical protein	NA	NA	NA	NA	NA
QAA84150.1|910388_912665_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
QAA84151.1|912695_913016_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
QAA84152.1|913339_913561_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
QAA84153.1|913690_915637_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
QAA84154.1|915633_916752_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 4
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	1500548	1542969	4913154	protease,portal,lysis,terminase,coat,integrase,tail	Salmonella_virus(64.06%)	66	1488784:1488798	1544316:1544330
1488784:1488798	attL	GGCGGCAATGTTATA	NA	NA	NA	NA
QAA84662.1|1500548_1501073_-	hypothetical protein	NA	A0A1U9AJC8	Stx1_converting_phage	30.0	1.7e-09
QAA84663.1|1501474_1501963_-	hypothetical protein	NA	NA	NA	NA	NA
QAA87709.1|1501935_1502211_-	response regulator	NA	NA	NA	NA	NA
QAA84664.1|1503653_1505630_-	lytic transglycosylase domain-containing protein	NA	A0A1R3Y5Q1	Salmonella_virus	99.4	0.0e+00
QAA87710.1|1505629_1506967_-	DNA transfer protein	NA	A0A1R3Y5Q4	Salmonella_virus	100.0	1.0e-244
QAA84665.1|1507009_1507699_-	DNA transfer protein	NA	A0A1R3Y5P8	Salmonella_virus	100.0	4.0e-91
QAA84666.1|1507701_1508157_-	DUF2824 family protein	NA	A0A1R3Y5P3	Salmonella_virus	100.0	1.8e-87
QAA84667.1|1508156_1508858_-|tail	phage tail protein	tail	A0A1R3Y5X6	Salmonella_virus	100.0	1.2e-74
QAA84668.1|1508861_1510280_-	hypothetical protein	NA	E7C9U1	Salmonella_phage	99.4	4.6e-275
QAA84669.1|1510239_1510740_-	hypothetical protein	NA	Q76H19	Enterobacteria_phage	100.0	4.2e-90
QAA84670.1|1510723_1511284_-	hypothetical protein	NA	A0A1R3Y5P2	Salmonella_virus	100.0	1.1e-102
QAA84671.1|1511324_1512617_-|coat	coat protein	coat	A0A1R3Y5Q0	Salmonella_virus	100.0	1.1e-243
QAA84672.1|1512616_1513528_-	scaffolding protein	NA	A0A1R3Y5R6	Salmonella_virus	100.0	4.9e-161
QAA84673.1|1513541_1515719_-|portal	portal protein	portal	A0A1R3Y5N6	Salmonella_virus	100.0	0.0e+00
QAA84674.1|1515718_1517218_-|terminase	terminase	terminase	A0A1R3Y5N2	Salmonella_virus	100.0	2.8e-307
QAA84675.1|1517195_1517684_-	DNA-packaging protein	NA	A3EYX3	Salmonella_phage	100.0	2.9e-88
QAA84676.1|1517707_1517887_-	hypothetical protein	NA	A0A2H4A350	Salmonella_phage	100.0	1.1e-24
QAA84677.1|1517888_1518131_-	DUF2560 family protein	NA	A0A1R3Y5V5	Salmonella_virus	100.0	1.7e-36
QAA84678.1|1518438_1518699_+	hypothetical protein	NA	A0A089FW14	Salmonella_phage	100.0	6.6e-39
QAA84679.1|1518960_1519566_-	Rha family transcriptional regulator	NA	A0A1R3Y613	Salmonella_virus	100.0	1.4e-111
QAA84680.1|1519715_1520153_-|lysis	lysis protein	lysis	A0A1R3Y6Z8	Salmonella_virus	100.0	1.8e-73
QAA87711.1|1520241_1520739_-	lysozyme	NA	A0A1R3Y5W5	Salmonella_virus	100.0	1.7e-91
QAA84681.1|1520716_1520920_-	hypothetical protein	NA	I6R0S9	Salmonella_phage	100.0	1.1e-33
QAA84682.1|1521384_1521903_-	DUF1133 family protein	NA	A0A1R3Y5U9	Salmonella_virus	100.0	2.0e-95
QAA84683.1|1521899_1522079_-	hypothetical protein	NA	E7C9S6	Salmonella_phage	94.9	1.3e-22
QAA84684.1|1522059_1522263_-	protein ninH	NA	A0A1R3Y5V4	Salmonella_virus	100.0	1.6e-32
QAA84685.1|1522259_1522484_-	protein ninY	NA	A0A1R3Y5U5	Salmonella_virus	100.0	1.3e-38
QAA84686.1|1522480_1523092_-	recombination protein NinG	NA	A3EYW8	Salmonella_phage	100.0	9.3e-100
QAA84687.1|1523084_1523255_-	protein ninF	NA	A0A1R3Y5V0	Salmonella_virus	100.0	2.5e-26
QAA84688.1|1523251_1523434_-	NinE family protein	NA	C6ZR57	Salmonella_phage	100.0	5.7e-29
QAA84689.1|1523400_1523574_-	protein ninD	NA	C6ZR56	Salmonella_phage	100.0	5.2e-32
QAA84690.1|1523570_1524017_-	recombination protein NinB	NA	A0A1R3Y605	Salmonella_virus	100.0	7.1e-81
QAA84691.1|1523973_1524162_-	hypothetical protein	NA	A0A1R3Y6Z7	Salmonella_virus	100.0	4.2e-27
QAA84692.1|1524164_1524458_-	hypothetical protein	NA	A0A1R3Y5V7	Salmonella_virus	100.0	1.2e-47
QAA84693.1|1524469_1524679_-	hypothetical protein	NA	A0A1R3Y5S8	Salmonella_virus	100.0	1.1e-31
QAA84694.1|1524688_1524961_-	DUF4752 family protein	NA	A0A1R3Y5T8	Salmonella_virus	100.0	7.2e-44
QAA84695.1|1525032_1525302_-	hypothetical protein	NA	A0A1R3Y5U7	Salmonella_virus	100.0	6.4e-45
QAA84696.1|1525298_1526675_-	replicative DNA helicase	NA	A0A1R3Y5T0	Salmonella_virus	100.0	1.5e-254
QAA84697.1|1526671_1527505_-	DNA replication protein	NA	A0A1R3Y5R9	Salmonella_virus	100.0	3.8e-152
QAA84698.1|1527497_1527644_-	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
QAA84699.1|1527678_1527960_-	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
QAA84700.1|1528070_1528286_-	helix-turn-helix domain-containing protein	NA	Q76H55	Enterobacteria_phage	100.0	1.3e-32
QAA84701.1|1528396_1529086_+	helix-turn-helix transcriptional regulator	NA	Q76H56	Enterobacteria_phage	100.0	1.3e-126
QAA84702.1|1529174_1530098_+	hypothetical protein	NA	A0A1R3Y6Z6	Salmonella_virus	100.0	1.5e-181
QAA84703.1|1530133_1530343_-	fumarate hydratase FumD	NA	I6R0R9	Salmonella_phage	91.3	5.5e-28
QAA84704.1|1530489_1530687_-	hypothetical protein	NA	A0A075B8J1	Enterobacteria_phage	94.3	2.2e-10
QAA84705.1|1530706_1531039_+	hypothetical protein	NA	A0A1R3Y5R1	Salmonella_virus	100.0	2.2e-55
QAA84706.1|1531117_1531318_+	restriction endonuclease	NA	A0A1R3Y5S4	Salmonella_virus	100.0	1.0e-31
QAA84707.1|1531357_1531657_+	hypothetical protein	NA	A0A1R3Y5U4	Salmonella_virus	100.0	2.3e-51
QAA84708.1|1531980_1532133_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	A0A1R3Y5R2	Salmonella_virus	100.0	2.7e-24
QAA84709.1|1532113_1532302_+	protein kil	NA	A0A1R3Y5S5	Salmonella_virus	100.0	1.6e-31
QAA84710.1|1532431_1533139_+	recombinase	NA	A0A1R3Y600	Salmonella_virus	100.0	4.1e-139
QAA84711.1|1533138_1533423_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
QAA84712.1|1533469_1533763_+	DUF2856 family protein	NA	A0A1R3Y5T7	Salmonella_virus	100.0	3.2e-50
QAA84713.1|1533773_1533944_+	DUF2737 family protein	NA	A0A220NQV6	Salmonella_phage	100.0	6.1e-25
QAA84714.1|1533940_1534351_+	hypothetical protein	NA	A0A1R3Y5S0	Salmonella_virus	100.0	5.9e-74
QAA84715.1|1534347_1534992_+	ead/Ea22-like family protein	NA	A0A1R3Y5T1	Salmonella_virus	100.0	2.3e-117
QAA84716.1|1534991_1535747_+	hypothetical protein	NA	A0A1R3Y5Q7	Salmonella_virus	100.0	2.9e-151
QAA84717.1|1535757_1536723_+	DUF550 domain-containing protein	NA	A0A1R3Y5Q8	Salmonella_virus	99.7	1.9e-171
QAA84718.1|1536715_1537000_+	ASCH domain-containing protein	NA	A0A1R3Y5R3	Salmonella_virus	100.0	4.1e-50
QAA84719.1|1537068_1537665_+	hypothetical protein	NA	A0A1R3Y5P7	Salmonella_virus	100.0	3.2e-113
QAA84720.1|1537675_1538026_+	DNA-binding protein	NA	A0A1R3Y5Z5	Salmonella_virus	100.0	8.3e-61
QAA87712.1|1538397_1539066_+|integrase	site-specific integrase	integrase	A0A192Y6Q1	Salmonella_phage	100.0	6.1e-129
QAA84721.1|1539271_1540522_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.5	1.6e-98
QAA84722.1|1540533_1541637_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
QAA84723.1|1541916_1542969_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.2	4.8e-112
1544316:1544330	attR	GGCGGCAATGTTATA	NA	NA	NA	NA
>prophage 5
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	2299057	2343574	4913154	plate,tail,tRNA	Burkholderia_phage(42.86%)	45	NA	NA
QAA85356.1|2299057_2300056_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
QAA85357.1|2300143_2301454_-	conjugal transfer protein	NA	NA	NA	NA	NA
QAA85358.1|2301700_2302216_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
QAA87741.1|2302314_2302524_-	CsbD family protein	NA	NA	NA	NA	NA
QAA85359.1|2302545_2302659_-	hypothetical protein	NA	NA	NA	NA	NA
QAA85360.1|2304158_2304767_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
QAA85361.1|2304875_2305244_-	diacylglycerol kinase	NA	NA	NA	NA	NA
QAA85362.1|2305414_2307835_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
QAA85363.1|2307933_2308806_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
QAA85364.1|2308819_2309317_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
QAA85365.1|2309497_2310415_-	maltose operon protein MalM	NA	NA	NA	NA	NA
QAA85366.1|2310578_2311937_-	maltoporin	NA	NA	NA	NA	NA
QAA85367.1|2312025_2313135_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
QAA85368.1|2313496_2314687_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
QAA85369.1|2314818_2316363_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
QAA85370.1|2316377_2317268_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
QAA85371.1|2317433_2317844_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
QAA85372.1|2317986_2320083_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
QAA85373.1|2320082_2320820_-	hypothetical protein	NA	NA	NA	NA	NA
QAA85374.1|2320816_2321485_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
QAA87742.1|2321518_2321761_-	outer membrane protein	NA	NA	NA	NA	NA
QAA85375.1|2322204_2323854_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAA85376.1|2324198_2325548_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
QAA85377.1|2325680_2326028_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
QAA85378.1|2326603_2326891_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	2.3e-16
QAA85379.1|2326893_2327499_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.5e-60
QAA85380.1|2327511_2327826_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
QAA85381.1|2327985_2328441_+	hypothetical protein	NA	NA	NA	NA	NA
QAA85382.1|2328437_2328635_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
QAA85383.1|2328624_2330052_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
QAA85384.1|2330051_2330576_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
QAA85385.1|2330627_2330945_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
QAA85386.1|2330904_2331033_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
QAA85387.1|2331129_2333484_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	6.9e-66
QAA85388.1|2333483_2334437_+	methyl-accepting chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
QAA85389.1|2334436_2334646_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
QAA85390.1|2334633_2335677_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	2.5e-76
QAA85391.1|2335686_2336409_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	3.3e-11
QAA85392.1|2336736_2337099_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
QAA85393.1|2337095_2338025_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.8	8.8e-150
QAA85394.1|2338024_2339572_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
QAA85395.1|2339735_2340095_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
QAA85396.1|2340085_2341201_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
QAA85397.1|2341193_2341826_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
QAA85398.1|2341828_2343574_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	3.2e-52
>prophage 6
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	3940086	4047115	4913154	protease,holin,transposase,lysis,terminase,integrase,tRNA,head,tail	Salmonella_phage(38.89%)	104	3990512:3990527	4013503:4013518
QAA86785.1|3940086_3941124_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
QAA86786.1|3941239_3941929_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
QAA86787.1|3942247_3942631_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
QAA86788.1|3942692_3943280_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
QAA86789.1|3943382_3944282_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAA86790.1|3944299_3945634_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
QAA86791.1|3945764_3946502_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	tRNA	NA	NA	NA	NA
QAA86792.1|3946486_3948109_-	L-aspartate oxidase	NA	NA	NA	NA	NA
QAA86793.1|3948193_3948373_+	hypothetical protein	NA	NA	NA	NA	NA
QAA86794.1|3948372_3948537_+	rpoE leader peptide RseD	NA	NA	NA	NA	NA
QAA86795.1|3948533_3949109_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA	NA
QAA86796.1|3949140_3949791_+	anti-sigma-E factor RseA	NA	NA	NA	NA	NA
QAA86797.1|3949790_3950747_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA	NA
QAA86798.1|3950743_3951223_+	SoxR-reducing system protein RseC	NA	NA	NA	NA	NA
QAA87791.1|3951252_3951369_+	transcriptional regulator	NA	NA	NA	NA	NA
QAA86799.1|3951720_3952950_+	DUF4102 domain-containing protein	NA	H6WRW7	Salmonella_phage	94.4	2.9e-233
QAA86800.1|3952927_3953212_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	86.2	3.1e-42
QAA86801.1|3953252_3953492_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
QAA86802.1|3954654_3957582_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.3	0.0e+00
QAA86803.1|3957708_3958059_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
QAA86804.1|3958080_3958239_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
QAA86805.1|3958692_3959355_-	hypothetical protein	NA	NA	NA	NA	NA
QAA86806.1|3959354_3959741_-	hypothetical protein	NA	NA	NA	NA	NA
QAA86807.1|3959733_3960573_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	33.3	1.5e-31
QAA86808.1|3960631_3961027_-	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	61.4	1.9e-37
QAA86809.1|3961126_3961369_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	64.1	2.1e-23
QAA86810.1|3961328_3961703_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	97.6	5.6e-63
QAA86811.1|3961794_3962631_+	replication protein	NA	K7PGT1	Enterobacteria_phage	48.5	4.6e-49
QAA86812.1|3962627_3963323_+	phage replication protein	NA	G8C7U6	Escherichia_phage	45.4	2.1e-55
QAA86813.1|3963336_3964035_+	DUF550 domain-containing protein	NA	A0A0M4RTV1	Salmonella_phage	85.7	2.1e-63
QAA86814.1|3964142_3964775_+	hypothetical protein	NA	NA	NA	NA	NA
QAA86815.1|3965017_3965251_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
QAA86816.1|3965367_3965616_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
QAA86817.1|3965650_3966253_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
QAA86818.1|3966252_3966459_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	97.1	1.7e-34
QAA86819.1|3966461_3967073_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.0	1.2e-91
QAA86820.1|3967069_3967210_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
QAA86821.1|3967206_3967884_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.0	7.7e-63
QAA86822.1|3967880_3968066_+	hypothetical protein	NA	NA	NA	NA	NA
QAA86823.1|3968156_3968720_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
QAA86824.1|3969226_3969415_+	hypothetical protein	NA	NA	NA	NA	NA
QAA86825.1|3969629_3970316_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	100.0	9.4e-133
QAA87792.1|3970591_3970921_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
QAA86826.1|3970904_3971357_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	5.1e-79
QAA86827.1|3971374_3971827_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
QAA86828.1|3972062_3972464_-	inhibitor of g-type lysozyme	NA	NA	NA	NA	NA
QAA86829.1|3972750_3973245_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.3e-56
QAA86830.1|3978445_3978793_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
QAA87793.1|3980704_3981235_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	79.5	2.0e-74
QAA86831.1|3982563_3982965_+|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
QAA86832.1|3982972_3983719_+|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
QAA86833.1|3984154_3984493_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
QAA86834.1|3987545_3987884_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	65.1	2.1e-40
QAA87794.1|3989338_3989866_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	79.9	1.4e-67
3990512:3990527	attL	CACGGTCTGGTCGTCG	NA	NA	NA	NA
QAA86835.1|3991330_3991603_+	hypothetical protein	NA	K7PKJ2	Enterobacteria_phage	71.1	2.2e-29
QAA86836.1|3991713_3992148_+	hypothetical protein	NA	A5LH43	Enterobacteria_phage	68.8	6.3e-42
QAA87795.1|3992356_3993280_+	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	83.6	5.8e-61
QAA86837.1|3993318_3993561_+	hypothetical protein	NA	NA	NA	NA	NA
QAA86838.1|3993614_3995984_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	64.8	3.6e-83
QAA86839.1|3995980_3996805_+|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	92.0	1.2e-145
QAA86840.1|3996794_3997373_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.6e-93
QAA86841.1|3997469_3997697_-	phage virulence factor	NA	NA	NA	NA	NA
QAA86842.1|3997803_3998016_+	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	3.8e-08
QAA87796.1|3998078_3998144_+	DUF4113 domain-containing protein	NA	NA	NA	NA	NA
QAA86843.1|3998723_3998888_+|integrase	integrase	integrase	NA	NA	NA	NA
QAA86844.1|3998808_3999354_-|transposase	transposase	transposase	NA	NA	NA	NA
QAA86845.1|3999600_3999738_-	hypothetical protein	NA	NA	NA	NA	NA
QAA86846.1|4000234_4001728_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	100.0	3.4e-260
QAA86847.1|4002132_4003932_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
QAA86848.1|4003948_4004923_+	signal peptidase I	NA	NA	NA	NA	NA
QAA86849.1|4005196_4005877_+	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
QAA86850.1|4005873_4006779_+	GTPase Era	NA	NA	NA	NA	NA
QAA86851.1|4006790_4007519_+	DNA repair protein RecO	NA	NA	NA	NA	NA
QAA86852.1|4007530_4008262_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
QAA86853.1|4008261_4008642_+	holo-ACP synthase	NA	NA	NA	NA	NA
QAA86854.1|4008753_4009014_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
QAA86855.1|4009051_4009978_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	3.0e-09
QAA86856.1|4011310_4012228_+	oxidoreductase	NA	NA	NA	NA	NA
QAA86857.1|4013229_4014123_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
4013503:4013518	attR	CACGGTCTGGTCGTCG	NA	NA	NA	NA
QAA86858.1|4014133_4015495_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
QAA86859.1|4015498_4016134_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
QAA86860.1|4016158_4016710_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
QAA86861.1|4016760_4018305_-	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA	NA
QAA86862.1|4018305_4018539_-	hypothetical protein	NA	NA	NA	NA	NA
QAA86863.1|4018560_4022448_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	1.4e-127
QAA86864.1|4023097_4024528_+	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	2.0e-15
QAA86865.1|4024550_4025285_+	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA	NA
QAA86866.1|4025289_4026627_+	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
QAA86867.1|4026703_4027042_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
QAA86868.1|4027090_4028551_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	28.8	1.7e-46
QAA86869.1|4028606_4030751_-	lysine decarboxylase CadA	NA	NA	NA	NA	NA
QAA86870.1|4030833_4032165_-	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
QAA86871.1|4032525_4034070_-	transcriptional regulator CadC	NA	NA	NA	NA	NA
QAA86872.1|4034251_4035442_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
QAA86873.1|4035766_4037020_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
QAA86874.1|4037215_4038355_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
QAA86875.1|4038349_4039627_-	stationary phase inducible protein CsiE	NA	NA	NA	NA	NA
QAA87797.1|4039752_4040391_+	DUF1007 family protein	NA	NA	NA	NA	NA
QAA86876.1|4040381_4041368_+	nickel/cobalt transporter	NA	NA	NA	NA	NA
QAA86877.1|4041368_4042382_-	anaerobic sulfite reductase subunit AsrC	NA	NA	NA	NA	NA
QAA86878.1|4042392_4043211_-	anaerobic sulfite reductase subunit B	NA	NA	NA	NA	NA
QAA86879.1|4044438_4045317_-	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	3.5e-15
QAA86880.1|4045461_4046265_-	inositol-1-monophosphatase	NA	NA	NA	NA	NA
QAA86881.1|4046383_4047115_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
>prophage 7
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	4387412	4399712	4913154	holin,tail	Salmonella_phage(45.45%)	11	NA	NA
QAA87158.1|4387412_4389779_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	NA	Q9MBL9	Phage_Gifsy-2	88.7	2.9e-72
QAA87159.1|4390107_4391097_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	6.0e-189
QAA87160.1|4391111_4391480_+	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	81.7	7.4e-52
QAA87161.1|4391508_4392840_-	NTPase	NA	R9TRQ8	Vibrio_phage	28.5	2.1e-19
QAA87162.1|4393136_4393466_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	94.6	3.9e-36
QAA87163.1|4394058_4395300_+	hypothetical protein	NA	Q8HAB4	Salmonella_phage	95.3	1.0e-52
QAA87164.1|4395302_4395830_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	31.3	3.1e-11
QAA87165.1|4396207_4396651_+|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	43.9	1.4e-28
QAA87166.1|4396704_4398534_-	acyltransferase	NA	C6ZR20	Salmonella_phage	29.6	3.0e-61
QAA87167.1|4398890_4399181_-	DinI family protein	NA	S4TND2	Salmonella_phage	83.3	4.7e-25
QAA87168.1|4399208_4399712_+	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	71.3	9.5e-50
>prophage 8
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	4471761	4480932	4913154	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
QAA87233.1|4471761_4472709_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
QAA87234.1|4472692_4473424_+	ABC transporter permease	NA	NA	NA	NA	NA
QAA87235.1|4473404_4473512_-	protein YohO	NA	NA	NA	NA	NA
QAA87236.1|4473571_4474303_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.4	6.5e-100
QAA87237.1|4474525_4476211_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
QAA87238.1|4476207_4476927_+	two-component system response regulator YehT	NA	NA	NA	NA	NA
QAA87239.1|4476973_4477441_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
QAA87240.1|4477497_4478028_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
QAA87241.1|4478199_4478658_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	71.2	3.2e-52
QAA87242.1|4478898_4480932_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 9
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	4549240	4559746	4913154		Enterobacteria_phage(37.5%)	10	NA	NA
QAA87296.1|4549240_4550644_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	27.1	3.1e-21
QAA87297.1|4550821_4551715_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
QAA87298.1|4552091_4553177_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
QAA87299.1|4553176_4554076_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
QAA87816.1|4554123_4555002_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	9.3e-109
QAA87300.1|4555002_4555554_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.2e-52
QAA87301.1|4555559_4556552_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
QAA87302.1|4556548_4557322_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
QAA87303.1|4557326_4558406_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.1	6.6e-16
QAA87304.1|4558432_4559746_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 10
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	4645738	4696485	4913154	protease,portal,plate,holin,lysis,terminase,integrase,head,tail	Salmonella_phage(88.52%)	69	4640316:4640330	4656791:4656805
4640316:4640330	attL	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAA87383.1|4645738_4646212_-	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	77.6	7.1e-39
QAA87384.1|4646859_4647150_-	DUF4102 domain-containing protein	NA	H2BDA3	Pseudomonas_phage	49.1	3.0e-08
QAA87385.1|4647521_4648319_-	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
QAA87386.1|4648610_4649600_-|integrase	integrase	integrase	A0A192Y7M7	Salmonella_phage	100.0	8.6e-196
QAA87387.1|4649601_4649844_-	DUF4224 domain-containing protein	NA	Q8HAA9	Salmonella_phage	100.0	9.5e-40
QAA87388.1|4649868_4650438_-	3'-5' exoribonuclease	NA	A0A192Y6E0	Salmonella_phage	100.0	7.1e-110
QAA87389.1|4650441_4651275_-	hypothetical protein	NA	Q8HAA7	Salmonella_phage	100.0	4.7e-163
QAA87390.1|4651271_4651889_-	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	100.0	2.6e-113
QAA87391.1|4651885_4652401_-	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	7.4e-98
QAA87392.1|4652397_4652628_-	hypothetical protein	NA	Q8HAA4	Salmonella_phage	100.0	2.0e-34
QAA87393.1|4652698_4653238_-	HD family hydrolase	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
QAA87394.1|4653374_4654202_-	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	100.0	7.5e-153
QAA87823.1|4654259_4654631_-	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
QAA87395.1|4655445_4656141_-	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	100.0	3.2e-128
QAA87396.1|4656114_4656300_+	amino acid permease	NA	NA	NA	NA	NA
QAA87397.1|4656490_4657045_+	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
4656791:4656805	attR	AATCAGCGCCTGCTG	NA	NA	NA	NA
QAA87398.1|4657041_4658199_+	peptidase	NA	Q8HA97	Salmonella_phage	100.0	4.2e-218
QAA87399.1|4658195_4658420_+	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
QAA87400.1|4658416_4659235_+	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	100.0	2.8e-136
QAA87401.1|4659236_4659719_+	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	100.0	1.1e-87
QAA87402.1|4659718_4660612_+	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	100.0	7.6e-175
QAA87403.1|4660608_4660998_+	RusA family crossover junction endodeoxyribonuclease	NA	Q8HA93	Salmonella_phage	100.0	3.7e-70
QAA87404.1|4661014_4661875_+	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	100.0	2.9e-163
QAA87405.1|4661882_4662872_+	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.6	4.9e-191
QAA87406.1|4662882_4663506_+	hypothetical protein	NA	Q8HA89	Salmonella_phage	100.0	9.1e-119
QAA87824.1|4663638_4663896_+	hypothetical protein	NA	Q8HA88	Salmonella_phage	100.0	5.2e-44
QAA87407.1|4663825_4664260_-	hypothetical protein	NA	NA	NA	NA	NA
QAA87408.1|4664421_4664766_+|holin	phage holin, lambda family	holin	Q8HA87	Salmonella_phage	100.0	5.3e-44
QAA87409.1|4664768_4665383_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	100.0	9.3e-116
QAA87410.1|4665379_4665865_+|lysis	lysis protein	lysis	Q8HA85	Salmonella_phage	100.0	5.9e-81
QAA87411.1|4666077_4666497_+	KilA-N domain-containing protein	NA	Q8HA84	Salmonella_phage	100.0	4.8e-71
QAA87412.1|4666716_4667019_+	hypothetical protein	NA	Q8HA83	Salmonella_phage	100.0	3.6e-52
QAA87413.1|4667079_4667430_+	HNH endonuclease	NA	Q8HA82	Salmonella_phage	100.0	2.5e-65
QAA87414.1|4667555_4668050_+|terminase	phage terminase small subunit P27 family	terminase	Q8HAD7	Salmonella_phage	100.0	4.6e-89
QAA87415.1|4668046_4669780_+|terminase	terminase large subunit	terminase	Q8HAD6	Salmonella_phage	100.0	0.0e+00
QAA87416.1|4669791_4669974_+	hypothetical protein	NA	Q8HAD5	Salmonella_phage	100.0	1.0e-25
QAA87417.1|4669973_4671215_+|portal	phage portal protein	portal	Q8HAD4	Salmonella_phage	99.8	2.0e-242
QAA87418.1|4671192_4671843_+|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	100.0	1.5e-119
QAA87419.1|4673112_4673313_+	hypothetical protein	NA	Q8HAD1	Salmonella_phage	100.0	1.4e-28
QAA87420.1|4673315_4673639_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A192Y8J4	Salmonella_phage	100.0	6.3e-55
QAA87421.1|4673635_4674040_+|head,tail	head-tail adaptor protein	head,tail	Q8HAC9	Salmonella_phage	100.0	1.4e-72
QAA87422.1|4674011_4674524_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	100.0	4.6e-92
QAA87423.1|4674520_4675081_+	hypothetical protein	NA	Q8HAC7	Salmonella_phage	100.0	3.0e-105
QAA87424.1|4675084_4675249_+	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	100.0	1.0e-24
QAA87425.1|4675238_4676735_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	100.0	2.7e-278
QAA87426.1|4676734_4677091_+|tail	phage tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
QAA87427.1|4677087_4677414_+|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
QAA87428.1|4677498_4679427_+|tail	phage tail tape measure protein	tail	Q8HAC2	Salmonella_phage	99.8	0.0e+00
QAA87429.1|4679460_4680801_+	DNA circularization protein	NA	A0A192Y5U9	Salmonella_phage	99.6	5.7e-251
QAA87430.1|4680797_4681856_+|plate	baseplate protein	plate	Q8HAC0	Salmonella_phage	99.7	8.6e-202
QAA87431.1|4682392_4682806_+	hypothetical protein	NA	Q8HAB8	Salmonella_phage	100.0	1.1e-75
QAA87432.1|4682777_4683323_+|head	head assembly protein	head	Q8HAB7	Salmonella_phage	100.0	9.2e-99
QAA87433.1|4683357_4683879_+|plate	baseplate J/gp47 family protein	plate	Q8HAB6	Salmonella_phage	100.0	2.9e-94
QAA87434.1|4683881_4684469_+	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	100.0	2.9e-114
QAA87435.1|4684455_4686018_+|tail	phage tail protein	tail	Q8HAB4	Salmonella_phage	100.0	2.6e-287
QAA87436.1|4686017_4686587_+|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	100.0	7.3e-107
QAA87437.1|4686871_4687879_-	type III secretion system effector arginine glycosyltransferase	NA	Q8HAB2	Salmonella_phage	100.0	7.9e-197
QAA87438.1|4688091_4688313_+	DNA-binding protein	NA	Q8HAB1	Salmonella_phage	100.0	1.2e-36
QAA87439.1|4688426_4688642_-	hypothetical protein	NA	NA	NA	NA	NA
QAA87440.1|4688723_4688966_+	hypothetical protein	NA	NA	NA	NA	NA
QAA87441.1|4688943_4689105_+	hypothetical protein	NA	NA	NA	NA	NA
QAA87442.1|4689231_4689651_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
QAA87443.1|4689653_4690922_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	92.2	4.2e-227
QAA87444.1|4691376_4691589_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
QAA87825.1|4691599_4691788_+	cold-shock protein	NA	NA	NA	NA	NA
QAA87445.1|4692048_4693245_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.1	1.8e-110
QAA87446.1|4693894_4694194_+	hypothetical protein	NA	NA	NA	NA	NA
QAA87447.1|4694285_4694981_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
QAA87448.1|4695054_4696485_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 11
CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4913154	4800524	4807330	4913154	integrase,tail	Salmonella_phage(33.33%)	11	4802734:4802756	4812446:4812468
QAA87551.1|4800524_4800755_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
QAA87552.1|4800892_4801267_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
QAA87553.1|4801267_4802143_+	copper resistance D family protein	NA	NA	NA	NA	NA
QAA87554.1|4802159_4802513_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
4802734:4802756	attL	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
QAA87555.1|4802886_4803741_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
QAA87830.1|4803800_4804295_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
QAA87556.1|4804484_4804715_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
QAA87557.1|4804768_4805299_+	DUF2514 domain-containing protein	NA	A0A193GYI0	Enterobacter_phage	31.8	1.1e-08
QAA87558.1|4805555_4805723_-	lytic enzyme	NA	NA	NA	NA	NA
QAA87559.1|4805787_4805976_-	hypothetical protein	NA	NA	NA	NA	NA
QAA87560.1|4806448_4807330_+|tail	phage tail protein	tail	A0A0M4RTP2	Salmonella_phage	76.0	2.2e-65
4812446:4812468	attR	GGAATCGTATTCGGTCTCTTTTT	NA	NA	NA	NA
