assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004022525.1_ASM402252v1	CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	1	1649161-1649249	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TGCGCGCCGGACGTGACGCGATT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|199aa|up_9|CP034968.1_1638365_1638962_-	PRK00015, rnhB, ribonuclease HII; Validated	NA|383aa|up_8|CP034968.1_1638958_1640107_-	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed	NA|263aa|up_7|CP034968.1_1640106_1640895_-	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|152aa|up_6|CP034968.1_1640898_1641354_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|342aa|up_5|CP034968.1_1641459_1642485_-	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional	NA|162aa|up_4|CP034968.1_1642488_1642974_-	PRK10780, PRK10780, molecular chaperone Skp	NA|805aa|up_3|CP034968.1_1643096_1645511_-	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional	NA|451aa|up_2|CP034968.1_1645542_1646895_-	PRK10779, PRK10779, sigma E protease regulator RseP	NA|286aa|up_1|CP034968.1_1646906_1647764_-	PRK11624, cdsA, phosphatidate cytidylyltransferase	NA|253aa|up_0|CP034968.1_1647776_1648535_-	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA|242aa|down_0|CP034968.1_1650367_1651093_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|284aa|down_1|CP034968.1_1651237_1652089_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|242aa|down_2|CP034968.1_1652346_1653072_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|265aa|down_3|CP034968.1_1653522_1654317_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|891aa|down_4|CP034968.1_1654553_1657226_+	PRK05007, PRK05007, bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA|275aa|down_5|CP034968.1_1657255_1658080_+	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|434aa|down_6|CP034968.1_1658116_1659418_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|129aa|down_7|CP034968.1_1659664_1660051_+	PRK13677, PRK13677, DUF3461 family protein	NA|386aa|down_8|CP034968.1_1660139_1661297_-	PRK11477, PRK11477, CdaR family transcriptional regulator	NA|473aa|down_9|CP034968.1_1661449_1662868_-	PRK10942, PRK10942, serine endoprotease DegP
GCA_004022525.1_ASM402252v1	CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	3	3666996-3668245	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,20,20	20	TypeI-E	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA|57aa|down_2|CP034968.1_3669518_3669689_+,NA|75aa|down_7|CP034968.1_3675491_3675716_-	NA|381aa|up_9|CP034968.1_3652794_3653937_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|CP034968.1_3653980_3656737_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|CP034968.1_3656794_3658090_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|CP034968.1_3658141_3660376_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|CP034968.1_3660459_3660816_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|CP034968.1_3660781_3661078_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|CP034968.1_3661845_3662646_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP034968.1_3662873_3664511_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP034968.1_3664593_3665892_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP034968.1_3666027_3666699_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP034968.1_3668342_3669140_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP034968.1_3669227_3669590_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP034968.1_3669518_3669689_+	NA	NA|600aa|down_3|CP034968.1_3670013_3671813_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP034968.1_3671812_3673525_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP034968.1_3673600_3674335_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP034968.1_3674422_3675376_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|down_7|CP034968.1_3675491_3675716_-	NA	cas3|888aa|down_8|CP034968.1_3675820_3678484_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_9|CP034968.1_3678495_3680052_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCA_004022525.1_ASM402252v1	CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	4	3684377-3684956	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|75aa|up_8|CP034968.1_3675491_3675716_-,NA	NA|318aa|up_9|CP034968.1_3674422_3675376_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|up_8|CP034968.1_3675491_3675716_-	NA	cas3|888aa|up_7|CP034968.1_3675820_3678484_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP034968.1_3678495_3680052_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP034968.1_3680048_3680609_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP034968.1_3680622_3681681_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP034968.1_3681691_3682438_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP034968.1_3682419_3683070_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP034968.1_3683066_3683987_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034968.1_3683986_3684280_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034968.1_3685621_3686668_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034968.1_3686918_3687827_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034968.1_3687836_3689276_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP034968.1_3689262_3689868_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|104aa|down_4|CP034968.1_3690431_3690743_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|CP034968.1_3690761_3691472_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|CP034968.1_3691471_3691951_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|CP034968.1_3691947_3692997_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|CP034968.1_3692977_3693739_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|CP034968.1_3693732_3694359_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCA_004022525.1_ASM402252v1	CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	5	3685030-3685607	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA|75aa|up_8|CP034968.1_3675491_3675716_-,NA	NA|318aa|up_9|CP034968.1_3674422_3675376_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|75aa|up_8|CP034968.1_3675491_3675716_-	NA	cas3|888aa|up_7|CP034968.1_3675820_3678484_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|CP034968.1_3678495_3680052_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|CP034968.1_3680048_3680609_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP034968.1_3680622_3681681_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP034968.1_3681691_3682438_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP034968.1_3682419_3683070_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP034968.1_3683066_3683987_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP034968.1_3683986_3684280_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP034968.1_3685621_3686668_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP034968.1_3686918_3687827_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP034968.1_3687836_3689276_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP034968.1_3689262_3689868_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|104aa|down_4|CP034968.1_3690431_3690743_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|CP034968.1_3690761_3691472_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|CP034968.1_3691471_3691951_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|CP034968.1_3691947_3692997_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|CP034968.1_3692977_3693739_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|CP034968.1_3693732_3694359_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCA_004022525.1_ASM402252v1	CP034968	Salmonella enterica subsp. enterica serovar Typhimurium strain B3589 chromosome, complete genome	6	3876536-3876645	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TGTCCCACCCTGTACCACTTTTTTTTAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA|276aa|down_2|CP034968.1_3879433_3880261_+,NA|198aa|down_4|CP034968.1_3882178_3882772_-	NA|212aa|up_9|CP034968.1_3867912_3868548_+	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|401aa|up_8|CP034968.1_3868621_3869824_-	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|338aa|up_7|CP034968.1_3870118_3871132_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_6|CP034968.1_3871142_3872123_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|125aa|up_5|CP034968.1_3872119_3872494_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|174aa|up_4|CP034968.1_3872490_3873012_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|95aa|up_3|CP034968.1_3873124_3873409_-	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|119aa|up_2|CP034968.1_3873503_3873860_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|273aa|up_1|CP034968.1_3874013_3874832_-	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|428aa|up_0|CP034968.1_3874876_3876160_-	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|690aa|down_0|CP034968.1_3876662_3878732_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|72aa|down_1|CP034968.1_3878767_3878983_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|276aa|down_2|CP034968.1_3879433_3880261_+	NA	NA|398aa|down_3|CP034968.1_3880595_3881789_-	pfam02810, SEC-C, SEC-C motif	NA|198aa|down_4|CP034968.1_3882178_3882772_-	NA	NA|56aa|down_5|CP034968.1_3882818_3882986_-	PRK09692, PRK09692, integrase; Provisional	NA|355aa|down_6|CP034968.1_3882999_3884064_-	PRK09692, PRK09692, integrase; Provisional	NA|388aa|down_7|CP034968.1_3884664_3885828_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|727aa|down_8|CP034968.1_3885835_3888016_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|470aa|down_9|CP034968.1_3888012_3889422_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family
