The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025685	Enterococcus faecium strain CBA7134 chromosome, complete genome	2629393	948087	1030775	2629393	head,holin,protease,capsid,terminase,tail,portal,integrase,tRNA,transposase	Enterococcus_phage(51.22%)	102	970884:970901	1033142:1033159
QAA19373.1|948087_948840_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
QAA19374.1|948983_949331_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
QAA19375.1|949587_949881_+	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
QAA19376.1|949968_950625_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
QAA19377.1|950973_952608_+	LPXTG-protein cell wall anchor protein	NA	NA	NA	NA	NA
QAA20926.1|953034_953295_+	peptidase	NA	NA	NA	NA	NA
QAA19378.1|953291_953492_+	cell wall anchor protein	NA	NA	NA	NA	NA
QAA20927.1|953780_954794_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
QAA20928.1|955405_956221_+	peptidase	NA	NA	NA	NA	NA
QAA19379.1|956674_957847_+	class C sortase	NA	NA	NA	NA	NA
QAA19380.1|957843_958041_+	hypothetical protein	NA	NA	NA	NA	NA
QAA20929.1|958008_958503_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19381.1|959091_959514_+	HTH domain-containing protein	NA	NA	NA	NA	NA
QAA19382.1|959679_960873_-	MFS transporter	NA	NA	NA	NA	NA
QAA19383.1|961069_961441_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19384.1|961503_962583_+	glucuronyl hydrolase	NA	NA	NA	NA	NA
QAA19385.1|962611_963871_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
QAA19386.1|963923_964820_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
QAA19387.1|964830_965730_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
QAA19388.1|965710_966373_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
QAA19389.1|966578_968243_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
QAA19390.1|968255_968966_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
QAA19391.1|969094_969592_+	GAF domain-containing protein	NA	NA	NA	NA	NA
QAA19392.1|969777_970038_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19393.1|970449_970986_-	VanZ family protein	NA	NA	NA	NA	NA
970884:970901	attL	AGAGAAAAAAAGTAATAA	NA	NA	NA	NA
QAA19394.1|971261_971501_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19395.1|971947_973090_-|integrase	site-specific integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	43.0	1.4e-69
QAA19396.1|973215_974988_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19397.1|975123_975546_-	toxin	NA	NA	NA	NA	NA
QAA19398.1|975563_975884_-	transcriptional regulator	NA	A0A0M4QX29	Bacillus_phage	49.4	5.9e-13
QAA19399.1|976570_976762_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19400.1|976758_976998_-	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
QAA19401.1|977134_977338_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
QAA19402.1|977352_977580_+	DNA-binding protein	NA	NA	NA	NA	NA
QAA19403.1|978065_978764_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	35.1	7.8e-26
QAA19404.1|978750_978981_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19405.1|978940_979282_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19406.1|979274_979946_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
QAA19407.1|979951_980638_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	4.9e-89
QAA19408.1|980640_981471_+	replication protein	NA	C9E2N2	Enterococcus_phage	44.2	5.2e-53
QAA19409.1|981487_982339_+	chromosomal replication initiator protein DnaA	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	4.7e-25
QAA19410.1|982335_982695_+	thiamine phosphate synthase	NA	A0A1P8BKR1	Lactococcus_phage	48.3	1.1e-18
QAA19411.1|982709_982871_+	antitoxin	NA	NA	NA	NA	NA
QAA19412.1|982867_983173_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19413.1|983172_983487_+	hypothetical protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	36.4	7.8e-10
QAA19414.1|983663_983975_+	hypothetical protein	NA	D2IZY1	Enterococcus_phage	73.7	3.1e-35
QAA19415.1|983975_984194_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19416.1|984193_984490_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19417.1|984566_984983_+	autolysin	NA	C9E2P5	Enterococcus_phage	67.4	1.8e-46
QAA20930.1|985242_985581_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19418.1|985561_985885_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19419.1|986217_986430_+	hypothetical protein	NA	D2IZF7	Enterococcus_phage	59.6	3.8e-08
QAA19420.1|986436_986664_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19421.1|986663_987212_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19422.1|987213_987588_+	HNH endonuclease	NA	A0A249XUN4	Enterococcus_phage	54.4	3.9e-32
QAA19423.1|987753_988233_+|terminase	phage terminase small subunit P27 family	terminase	V5UQR4	Enterococcus_phage	55.0	1.5e-41
QAA19424.1|988225_989950_+|terminase	terminase large subunit	terminase	A0A0M5M1F1	Enterococcus_phage	51.3	6.0e-168
QAA19425.1|990123_991308_+|portal	phage portal protein	portal	D7PQ41	Enterococcus_phage	43.1	8.7e-78
QAA20931.1|991255_991801_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0M4R4P2	Enterococcus_phage	59.2	1.1e-54
QAA19426.1|991841_993038_+|capsid	phage major capsid protein	capsid	A0A0S2SXJ6	Bacillus_phage	55.6	2.2e-81
QAA19427.1|993082_993292_+	hypothetical protein	NA	A5GYM0	Lactococcus_phage	62.7	8.6e-13
QAA19428.1|993303_993624_+	DNA packaging protein	NA	A0A0M4S687	Enterococcus_phage	47.9	1.3e-15
QAA19429.1|993565_993901_+|head,tail	head-tail adaptor protein	head,tail	C0LZZ3	Enterococcus_phage	37.8	1.7e-15
QAA19430.1|993897_994293_+	hypothetical protein	NA	A0A0M5M1E5	Enterococcus_phage	39.8	1.9e-16
QAA19431.1|994289_994661_+	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	46.2	2.5e-23
QAA19432.1|994676_995237_+|tail	phage tail protein	tail	A0A0S2MY53	Enterococcus_phage	45.9	2.6e-40
QAA19433.1|995346_995658_+	hypothetical protein	NA	A0A0S2MY76	Enterococcus_phage	44.8	4.0e-14
QAA19434.1|995681_995873_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19435.1|995872_1000258_+	tape measure protein	NA	A0A0M5M3L4	Enterococcus_phage	46.4	1.1e-229
QAA19436.1|1000268_1001099_+|tail	phage tail family protein	tail	A8ASK7	Listeria_phage	41.2	5.8e-52
QAA19437.1|1001107_1002127_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	55.6	2.6e-107
QAA19438.1|1002126_1003500_+	hypothetical protein	NA	A0A059T661	Listeria_phage	34.0	4.1e-18
QAA19439.1|1003515_1005678_+	hypothetical protein	NA	A0A060AI60	Enterococcus_phage	39.8	2.3e-60
QAA19440.1|1005689_1006136_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19441.1|1006137_1006275_+	XkdX family protein	NA	NA	NA	NA	NA
QAA19442.1|1006311_1006605_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19443.1|1006627_1006828_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	77.3	1.3e-21
QAA19444.1|1006837_1007857_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	65.5	1.2e-59
QAA19445.1|1008621_1008924_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19446.1|1009680_1010454_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
QAA19447.1|1010597_1010948_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19448.1|1010928_1011645_+	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.2	6.1e-34
QAA19449.1|1011644_1013093_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.0e-19
QAA19450.1|1013165_1013675_-	molybdenum ABC transporter ATP-binding protein ModC	NA	NA	NA	NA	NA
QAA19451.1|1013664_1014390_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19452.1|1014561_1016682_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	5.7e-221
QAA19453.1|1016910_1018089_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	49.7	2.1e-103
QAA19454.1|1018104_1018863_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	35.6	2.5e-25
QAA19455.1|1018885_1019371_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
QAA19456.1|1019441_1020695_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	A0A2H4PQX1	Staphylococcus_phage	55.3	4.5e-24
QAA19457.1|1020811_1022161_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
QAA19458.1|1022272_1023619_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAA19459.1|1025100_1025769_-	hypothetical protein	NA	Q9AZW5	Lactococcus_phage	50.3	2.0e-39
QAA19460.1|1025833_1026262_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
QAA19461.1|1026268_1026649_-	XRE family transcriptional regulator	NA	O03970	Lactobacillus_phage	34.9	2.8e-17
QAA19462.1|1026812_1027064_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAA19463.1|1027277_1027832_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19464.1|1027828_1028059_+	DNA-binding protein	NA	NA	NA	NA	NA
QAA19465.1|1028075_1028261_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19466.1|1028394_1029556_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	2.0e-79
QAA19467.1|1029872_1030286_+	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
QAA19468.1|1030517_1030775_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
1033142:1033159	attR	AGAGAAAAAAAGTAATAA	NA	NA	NA	NA
>prophage 2
CP025685	Enterococcus faecium strain CBA7134 chromosome, complete genome	2629393	1224914	1284488	2629393	holin,capsid,terminase,tail,integrase,tRNA,transposase	Lactobacillus_phage(25.81%)	74	1227906:1227921	1280962:1280977
QAA19644.1|1224914_1225616_+|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	tRNA	NA	NA	NA	NA
QAA19645.1|1225612_1226734_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
QAA19646.1|1226747_1227980_+	peptidase T	NA	NA	NA	NA	NA
1227906:1227921	attL	TTTGTTTCTTTACAAG	NA	NA	NA	NA
QAA19647.1|1228110_1229019_+	diacylglycerol kinase	NA	NA	NA	NA	NA
QAA19648.1|1229053_1229326_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
QAA19649.1|1229336_1230383_+	UPF0104 family protein	NA	NA	NA	NA	NA
QAA19650.1|1230632_1233242_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.0	1.6e-132
QAA19651.1|1233390_1234062_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19652.1|1234054_1234549_-	photosystem II biogenesis protein Psp29	NA	A0A1W6JK28	Lactococcus_phage	56.5	1.4e-42
QAA19653.1|1234568_1235789_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QAA19654.1|1235935_1237771_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.4	5.8e-20
QAA19655.1|1237863_1239000_-|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.1	6.6e-115
QAA19656.1|1239164_1239782_-	DUF4352 domain-containing protein	NA	A0A0P0IXE0	Lactobacillus_phage	67.5	4.6e-38
QAA20938.1|1239904_1240333_-	toxin	NA	NA	NA	NA	NA
QAA19657.1|1240339_1240711_-	XRE family transcriptional regulator	NA	O03970	Lactobacillus_phage	45.2	2.1e-22
QAA19658.1|1240865_1241099_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
QAA19659.1|1241095_1241365_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19660.1|1241372_1241594_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19661.1|1241847_1242393_+	hypothetical protein	NA	NA	NA	NA	NA
QAA20939.1|1242398_1242677_+	DNA-binding protein	NA	NA	NA	NA	NA
QAA19662.1|1242673_1242859_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19663.1|1242995_1243937_+	endonuclease	NA	D2IZK1	Enterococcus_phage	76.4	1.2e-141
QAA19664.1|1244030_1244921_+	recombinase RecT	NA	D2IYT9	Enterococcus_phage	84.1	2.4e-136
QAA19665.1|1244969_1245860_+	DNA replication protein DnaD	NA	NA	NA	NA	NA
QAA19666.1|1245852_1246212_+	hypothetical protein	NA	A0A1P8BKR1	Lactococcus_phage	46.6	6.8e-18
QAA19667.1|1246226_1246388_+	antitoxin	NA	NA	NA	NA	NA
QAA19668.1|1246384_1246690_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19669.1|1246689_1247007_+	DUF1140 domain-containing protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	35.4	3.0e-09
QAA19670.1|1247173_1247524_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19671.1|1247520_1247727_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19672.1|1247723_1248161_+	hypothetical protein	NA	Q8W5X2	Listeria_phage	45.7	3.3e-22
QAA19673.1|1248161_1248380_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19674.1|1248379_1248667_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19675.1|1248699_1248951_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19676.1|1249258_1249726_+	ArpU family transcriptional regulator	NA	NA	NA	NA	NA
QAA19677.1|1250611_1250836_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19678.1|1250878_1251589_+	hypothetical protein	NA	A0A2P1JTW4	Anoxybacillus_phage	46.6	2.2e-44
QAA19679.1|1251554_1252880_+|terminase	PBSX family phage terminase large subunit	terminase	A4L7R3	Lactococcus_phage	58.8	3.1e-156
QAA19680.1|1252873_1254427_+|capsid	capsid protein	capsid	O03928	Lactobacillus_phage	54.7	6.0e-151
QAA19681.1|1254429_1255566_+|capsid	capsid protein	capsid	O03929	Lactobacillus_phage	53.8	2.5e-90
QAA19682.1|1255675_1256251_+|capsid	capsid protein	capsid	Q9T1B8	Listeria_phage	47.1	1.2e-27
QAA19683.1|1256268_1257141_+	hypothetical protein	NA	Q6SED2	Lactobacillus_prophage	64.8	1.6e-105
QAA19684.1|1257158_1257404_+	hypothetical protein	NA	A5GYM0	Lactococcus_phage	55.1	2.2e-12
QAA19685.1|1257441_1257837_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19686.1|1257833_1258181_+|capsid	capsid protein	capsid	O03932	Lactobacillus_phage	56.2	3.6e-32
QAA19687.1|1258180_1258516_+|capsid	capsid protein	capsid	U3PIU9	Lactobacillus_phage	58.5	8.9e-20
QAA19688.1|1258515_1258908_+|capsid	capsid protein	capsid	Q5YA65	Bacillus_phage	47.3	1.1e-29
QAA19689.1|1258920_1259388_+|capsid	capsid protein	capsid	O03972	Lactobacillus_phage	64.1	1.0e-45
QAA19690.1|1259387_1259645_+	hypothetical protein	NA	A0A1D6Z291	Staphylococcus_phage	62.5	1.7e-15
QAA19691.1|1259714_1260149_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19692.1|1260153_1260774_+	hypothetical protein	NA	O03936	Lactobacillus_phage	43.3	6.7e-37
QAA19693.1|1260786_1265277_+|tail	phage tail tape measure protein	tail	A0A0M5M3L4	Enterococcus_phage	32.1	2.1e-108
QAA19694.1|1265266_1266094_+|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	42.4	1.3e-51
QAA19695.1|1266102_1267122_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	54.7	5.7e-102
QAA19696.1|1267122_1268496_+	hypothetical protein	NA	A0A059T661	Listeria_phage	35.4	9.0e-18
QAA19697.1|1268511_1270671_+	hypothetical protein	NA	A0A096XSZ6	Enterococcus_phage	48.7	4.1e-81
QAA19698.1|1270682_1271129_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19699.1|1271130_1271268_+	XkdX family protein	NA	NA	NA	NA	NA
QAA19700.1|1271305_1271599_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19701.1|1271595_1271820_+|holin	holin	holin	NA	NA	NA	NA
QAA19702.1|1271816_1272833_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	4.9e-61
QAA19703.1|1272924_1273497_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19704.1|1274641_1274908_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19705.1|1274951_1275143_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19706.1|1276104_1277064_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
QAA19707.1|1277324_1277606_+	hypothetical protein	NA	NA	NA	NA	NA
QAA19708.1|1277786_1278089_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19709.1|1278419_1278674_-	hypothetical protein	NA	NA	NA	NA	NA
QAA19710.1|1279196_1279394_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	2.3e-23
QAA19711.1|1279681_1280035_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
QAA19712.1|1280012_1280690_+	protein deglycase HchA	NA	NA	NA	NA	NA
QAA19713.1|1280690_1281614_+	malate dehydrogenase	NA	NA	NA	NA	NA
1280962:1280977	attR	CTTGTAAAGAAACAAA	NA	NA	NA	NA
QAA19714.1|1281694_1282087_-	VOC family protein	NA	NA	NA	NA	NA
QAA19715.1|1283297_1284488_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025685	Enterococcus faecium strain CBA7134 chromosome, complete genome	2629393	1591786	1600847	2629393		Synechococcus_phage(16.67%)	9	NA	NA
QAA19990.1|1591786_1592365_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
QAA20950.1|1592361_1593405_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	2.3e-61
QAA19991.1|1593436_1594876_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	3.4e-52
QAA19992.1|1594860_1597083_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	3.8e-151
QAA19993.1|1597083_1597755_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
QAA19994.1|1597756_1598011_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
QAA19995.1|1598010_1598739_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.2	5.1e-44
QAA19996.1|1598994_1599372_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
QAA19997.1|1599551_1600847_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
>prophage 4
CP025685	Enterococcus faecium strain CBA7134 chromosome, complete genome	2629393	1996419	2005381	2629393		Streptococcus_phage(66.67%)	9	NA	NA
QAA20356.1|1996419_1998609_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.2e-285
QAA20357.1|1999413_2000016_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	4.9e-53
QAA20358.1|2000069_2001191_-	DNA polymerase IV	NA	NA	NA	NA	NA
QAA20359.1|2001299_2002172_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.1	2.1e-89
QAA20360.1|2002240_2002588_-	DUF972 domain-containing protein	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
QAA20361.1|2002580_2003405_-	signal peptidase	NA	NA	NA	NA	NA
QAA20362.1|2003440_2004379_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.8	6.1e-34
QAA20363.1|2004392_2004722_-	hypothetical protein	NA	NA	NA	NA	NA
QAA20364.1|2004736_2005381_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 1
CP025687	Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence	185046	11865	62848	185046	transposase,protease	Paenibacillus_phage(12.5%)	48	NA	NA
QAA21000.1|11865_13027_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	3.5e-79
QAA21001.1|13316_14999_-	PTS lactose transporter subunit IIBC	NA	NA	NA	NA	NA
QAA21002.1|14982_15333_-	PTS lactose transporter subunit IIA	NA	NA	NA	NA	NA
QAA21003.1|15355_16762_-	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	30.2	3.4e-44
QAA21004.1|17228_18236_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
QAA21005.1|18629_19256_-	2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA	NA
QAA21006.1|20263_21385_-	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	34.9	7.3e-58
QAA21007.1|21409_22543_-	ATP-binding protein	NA	NA	NA	NA	NA
QAA21008.1|22533_23202_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	32.4	8.8e-27
QAA21009.1|23657_24644_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
QAA21010.1|24656_25583_-	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
QAA21011.1|25595_26111_-	galactose-6-phosphate isomerase subunit LacB	NA	A0A222YX14	Synechococcus_phage	29.0	9.5e-05
QAA21012.1|26129_26558_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
QAA21013.1|26577_27351_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.1	1.3e-18
QAA21014.1|27515_27995_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
QAA21015.1|28051_28354_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
QAA21016.1|28375_29833_+	PTS glucitol transporter subunit IIA	NA	NA	NA	NA	NA
QAA21017.1|30425_31178_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.9	1.9e-17
QAA21018.1|32194_33364_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
QAA21019.1|33525_34614_+	hypothetical protein	NA	NA	NA	NA	NA
QAA21020.1|34754_36401_-|transposase	IS5/IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	49.9	2.1e-146
QAA21021.1|36682_39061_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21022.1|39112_39472_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21023.1|40115_41075_+|transposase	IS30-like element IS6770 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	2.3e-36
QAA21024.1|41862_42090_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21025.1|42206_42311_-	resolvase	NA	NA	NA	NA	NA
QAA21026.1|42385_43150_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
QAA21027.1|43146_43800_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.0	5.8e-23
QAA21028.1|43883_44306_-	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
QAA21029.1|44375_44585_+	hypothetical protein	NA	NA	NA	NA	NA
QAA21030.1|45030_45219_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21031.1|46568_46763_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21032.1|46806_48156_-	replication protein RepR	NA	NA	NA	NA	NA
QAA21033.1|48671_48863_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21034.1|49081_49318_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21035.1|49885_52000_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.0	1.8e-118
QAA21036.1|52634_53258_+	resolvase	NA	M9Q1K0	Clostridium_phage	33.0	1.0e-16
QAA21037.1|53254_54685_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21038.1|54846_56031_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	24.2	2.4e-27
QAA21039.1|56115_56334_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21040.1|57484_57787_+	hypothetical protein	NA	F0PIG8	Enterococcus_phage	54.2	1.6e-07
QAA21041.1|58082_58778_+	hypothetical protein	NA	NA	NA	NA	NA
QAA21042.1|58814_59312_-	N-acetyltransferase	NA	NA	NA	NA	NA
QAA21043.1|59367_60276_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
QAA21044.1|60435_60747_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21045.1|60736_60919_-	enterocin	NA	NA	NA	NA	NA
QAA21046.1|61260_61494_-	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
QAA21047.1|61685_62848_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.2e-79
>prophage 2
CP025687	Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence	185046	104077	141296	185046	transposase	Staphylococcus_phage(28.57%)	37	NA	NA
QAA21091.1|104077_105268_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.4	9.5e-24
QAA21092.1|105837_106032_+	hypothetical protein	NA	NA	NA	NA	NA
QAA21093.1|106775_107030_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
QAA21094.1|107030_107348_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QAA21095.1|107811_108498_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	5.0e-126
QAA21096.1|109140_109686_-	cobalamin ECF transporter	NA	NA	NA	NA	NA
QAA21097.1|109835_112319_+	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent	NA	A0A0K2CP92	Brevibacillus_phage	45.4	2.9e-184
QAA21098.1|112332_112896_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
QAA21099.1|112911_113316_+	DUF4430 domain-containing protein	NA	NA	NA	NA	NA
QAA21100.1|113517_114192_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	67.0	5.9e-87
QAA21101.1|114727_115618_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.1	6.7e-22
QAA21102.1|115614_116007_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
QAA21103.1|118355_119006_+	glutamate racemase	NA	NA	NA	NA	NA
QAA21104.1|119050_119350_-	hypothetical protein	NA	NA	NA	NA	NA
QAA21105.1|119450_119882_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
QAA21106.1|120406_121114_+	HAD family hydrolase	NA	NA	NA	NA	NA
QAA21107.1|121186_121546_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
QAA21108.1|122204_123230_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
QAA21109.1|124679_125546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
QAA21110.1|126153_127344_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	27.1	2.1e-23
QAA21111.1|127646_127832_+	hypothetical protein	NA	NA	NA	NA	NA
QAA21112.1|128721_128994_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
QAA21113.1|129070_129400_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
QAA21114.1|129389_129677_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
QAA21115.1|129962_130820_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
QAA21116.1|130820_131369_+	hypothetical protein	NA	NA	NA	NA	NA
QAA21117.1|131628_131925_+	hypothetical protein	NA	NA	NA	NA	NA
QAA21118.1|131955_132204_-	XRE family transcriptional regulator	NA	A0A0C5K955	Enterococcus_phage	98.8	7.2e-35
QAA21119.1|132265_132502_-	hypothetical protein	NA	A0A0C5K6W6	Enterococcus_phage	93.6	1.3e-33
QAA21120.1|132710_133100_-	hypothetical protein	NA	A0A288TYE5	Enterococcus_phage	88.0	2.1e-57
QAA21121.1|134158_135349_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.2	3.5e-26
QAA21122.1|135884_136457_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	42.6	3.9e-23
QAA21123.1|136601_137306_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
QAA21124.1|137332_137623_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
QAA21125.1|137769_138003_+	copper chaperone	NA	NA	NA	NA	NA
QAA21126.1|138200_140105_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.4	1.4e-98
QAA21127.1|140336_141296_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	4.5e-32
