assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004015085.1_ASM401508v1	CP025833	Akkermansia muciniphila strain AMDK-18 chromosome, complete genome	1	2107229-2107324	1	CRISPRCasFinder	no		cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	Orphan	GTCGCACCCTCACGGGCGCGTGAATTGAAGT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	NA|60aa|up_8|CP025833.1_2098792_2098972_+,NA|74aa|up_3|CP025833.1_2103402_2103624_-,NA	NA|261aa|up_9|CP025833.1_2098010_2098793_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|60aa|up_8|CP025833.1_2098792_2098972_+	NA	NA|280aa|up_7|CP025833.1_2098951_2099791_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|380aa|up_6|CP025833.1_2099787_2100927_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|377aa|up_5|CP025833.1_2100939_2102070_-	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain	NA|400aa|up_4|CP025833.1_2102068_2103268_+	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional	NA|74aa|up_3|CP025833.1_2103402_2103624_-	NA	NA|88aa|up_2|CP025833.1_2103704_2103968_-	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|203aa|up_1|CP025833.1_2104128_2104737_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|618aa|up_0|CP025833.1_2104886_2106740_+	PLN02470, PLN02470, acetolactate synthase	NA|278aa|down_0|CP025833.1_2107518_2108352_+	pfam04450, BSP, Peptidase of plants and bacteria	NA|299aa|down_1|CP025833.1_2108672_2109569_+	PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional	NA|218aa|down_2|CP025833.1_2109708_2110362_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|858aa|down_3|CP025833.1_2110386_2112960_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|555aa|down_4|CP025833.1_2113150_2114815_+	cd16144, ARS_like, uncharacterized arylsulfatase subfamily	NA|296aa|down_5|CP025833.1_2115130_2116018_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|401aa|down_6|CP025833.1_2116098_2117301_+	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase	NA|646aa|down_7|CP025833.1_2117324_2119262_+	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|367aa|down_8|CP025833.1_2119332_2120433_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|713aa|down_9|CP025833.1_2120752_2122891_+	PRK10150, PRK10150, beta-D-glucuronidase; Provisional
GCA_004015085.1_ASM401508v1	CP025833	Akkermansia muciniphila strain AMDK-18 chromosome, complete genome	2	2536872-2538291	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	Type II-C, or Type II-C?,Type II-A, Type II-B,Type II-B	GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT,GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT,GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	36,36,36	0	0	NA	NA	NA:NA:NA	21,21,18	21	TypeII-C,orTypeII-C?,TypeII-A,TypeII-B,TypeII-B	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	NA|165aa|up_1|CP025833.1_2534966_2535461_-,NA	NA|314aa|up_9|CP025833.1_2521807_2522749_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|559aa|up_8|CP025833.1_2522649_2524326_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|395aa|up_7|CP025833.1_2525537_2526722_-	COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]	NA|680aa|up_6|CP025833.1_2526921_2528961_-	pfam13402, Peptidase_M60, Peptidase M60, enhancin and enhancin-like	NA|614aa|up_5|CP025833.1_2528969_2530811_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|276aa|up_4|CP025833.1_2530894_2531722_+	pfam07885, Ion_trans_2, Ion channel	NA|199aa|up_3|CP025833.1_2531809_2532406_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|556aa|up_2|CP025833.1_2532453_2534121_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|165aa|up_1|CP025833.1_2534966_2535461_-	NA	NA|357aa|up_0|CP025833.1_2535729_2536800_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	cas2|104aa|down_0|CP025833.1_2538351_2538663_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|312aa|down_1|CP025833.1_2538650_2539586_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1106aa|down_2|CP025833.1_2539596_2542914_-	pfam13395, HNH_4, HNH endonuclease	NA|369aa|down_3|CP025833.1_2543279_2544386_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|147aa|down_4|CP025833.1_2544478_2544919_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|429aa|down_5|CP025833.1_2545053_2546340_+	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|310aa|down_6|CP025833.1_2546376_2547306_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|205aa|down_7|CP025833.1_2547324_2547939_+	PRK00043, thiE, thiamine phosphate synthase	NA|272aa|down_8|CP025833.1_2547986_2548802_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|100aa|down_9|CP025833.1_2548770_2549070_+	COG1694, MazG, Predicted pyrophosphatase [General function prediction only]
GCA_004015085.1_ASM401508v1	CP025833	Akkermansia muciniphila strain AMDK-18 chromosome, complete genome	3	2613366-2613930	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	Orphan	GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC,GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC,GTTTCAATCCACGCACTCCT	33,33,20	0	0	NA	NA	NA:NA:NA	6,8,7	8	Orphan	cas3,DinG,csa3,DEDDh,cas2,cas1,cas9	NA|294aa|up_6|CP025833.1_2608531_2609413_-,NA|94aa|up_5|CP025833.1_2609405_2609687_-,NA|72aa|up_3|CP025833.1_2611326_2611542_-,NA|88aa|up_0|CP025833.1_2612817_2613081_+,NA|66aa|down_1|CP025833.1_2615558_2615756_-,NA|326aa|down_3|CP025833.1_2619686_2620664_-,NA|90aa|down_5|CP025833.1_2621251_2621521_+,NA|68aa|down_7|CP025833.1_2624211_2624415_+	NA|115aa|up_9|CP025833.1_2606208_2606553_-	TIGR04535, conserved_hypothetical_protein, ferritin-like protein	NA|115aa|up_8|CP025833.1_2606834_2607179_-	TIGR04535, conserved_hypothetical_protein, ferritin-like protein	NA|168aa|up_7|CP025833.1_2607359_2607863_-	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|294aa|up_6|CP025833.1_2608531_2609413_-	NA	NA|94aa|up_5|CP025833.1_2609405_2609687_-	NA	NA|545aa|up_4|CP025833.1_2609683_2611318_-	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein	NA|72aa|up_3|CP025833.1_2611326_2611542_-	NA	NA|207aa|up_2|CP025833.1_2611856_2612477_+	PHA00662, PHA00662, hypothetical protein	NA|100aa|up_1|CP025833.1_2612521_2612821_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|88aa|up_0|CP025833.1_2612817_2613081_+	NA	NA|385aa|down_0|CP025833.1_2614326_2615481_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|66aa|down_1|CP025833.1_2615558_2615756_-	NA	NA|1194aa|down_2|CP025833.1_2615946_2619528_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|326aa|down_3|CP025833.1_2619686_2620664_-	NA	NA|150aa|down_4|CP025833.1_2620681_2621131_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|90aa|down_5|CP025833.1_2621251_2621521_+	NA	NA|752aa|down_6|CP025833.1_2621655_2623911_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|68aa|down_7|CP025833.1_2624211_2624415_+	NA	NA|900aa|down_8|CP025833.1_2624407_2627107_-	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|192aa|down_9|CP025833.1_2627149_2627725_-	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain
