assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004011755.1_ASM401175v1	CP022411	Pseudomonas sp. RU47 chromosome, complete genome	2	1267188-1267294	2	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,WYL	Orphan	TTTTTTGCAGATGTACGCAATCCAACTGTAGGAG	34	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,WYL	NA|104aa|up_8|CP022411.1_1257494_1257806_+,NA|207aa|up_4|CP022411.1_1260233_1260854_-,NA|126aa|down_5|CP022411.1_1273233_1273611_-	NA|225aa|up_9|CP022411.1_1256605_1257280_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|104aa|up_8|CP022411.1_1257494_1257806_+	NA	NA|287aa|up_7|CP022411.1_1257805_1258666_+	PRK10302, PRK10302, hypothetical protein; Provisional	NA|279aa|up_6|CP022411.1_1258698_1259535_+	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase	NA|231aa|up_5|CP022411.1_1259537_1260230_+	pfam06904, Extensin-like_C, Extensin-like protein C-terminus	NA|207aa|up_4|CP022411.1_1260233_1260854_-	NA	NA|261aa|up_3|CP022411.1_1260946_1261729_+	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase	NA|212aa|up_2|CP022411.1_1261834_1262470_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|367aa|up_1|CP022411.1_1262564_1263665_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1023aa|up_0|CP022411.1_1263671_1266740_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|464aa|down_0|CP022411.1_1267538_1268930_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|230aa|down_1|CP022411.1_1268926_1269616_-	pfam13852, DUF4197, Protein of unknown function (DUF4197)	NA|133aa|down_2|CP022411.1_1269643_1270042_-	pfam09619, YscW, Type III secretion system lipoprotein chaperone (YscW)	NA|834aa|down_3|CP022411.1_1270172_1272674_-	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB	NA|70aa|down_4|CP022411.1_1272912_1273122_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|126aa|down_5|CP022411.1_1273233_1273611_-	NA	NA|270aa|down_6|CP022411.1_1273686_1274496_-	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional	NA|384aa|down_7|CP022411.1_1274495_1275647_-	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed	NA|864aa|down_8|CP022411.1_1275886_1278478_-	cd06435, CESA_NdvC_like, NdvC_like  proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	NA|273aa|down_9|CP022411.1_1278691_1279510_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
GCA_004011755.1_ASM401175v1	CP022411	Pseudomonas sp. RU47 chromosome, complete genome	3	1691537-1691683	3	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,WYL	Orphan	TGGGAGAGGGCTAGGGTGAGGGCCGTCCAATTCCGGATTCAGCAAA	46	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,WYL	NA|561aa|up_4|CP022411.1_1678611_1680294_+,NA	NA|199aa|up_9|CP022411.1_1660827_1661424_+	COG3148, COG3148, Uncharacterized conserved protein [Function unknown]	NA|454aa|up_8|CP022411.1_1661538_1662900_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|720aa|up_7|CP022411.1_1662910_1665070_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|453aa|up_6|CP022411.1_1665227_1666586_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|2871aa|up_5|CP022411.1_1667118_1675731_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|561aa|up_4|CP022411.1_1678611_1680294_+	NA	NA|762aa|up_3|CP022411.1_1680517_1682803_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|132aa|up_2|CP022411.1_1687850_1688246_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|196aa|up_1|CP022411.1_1688256_1688844_-	COG3318, COG3318, Predicted metal-binding protein related to the C-terminal domain of SecA [General function prediction only]	NA|710aa|up_0|CP022411.1_1689240_1691370_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|145aa|down_0|CP022411.1_1691873_1692308_+	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|590aa|down_1|CP022411.1_1692435_1694205_+	COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]	NA|730aa|down_2|CP022411.1_1694348_1696538_-	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|96aa|down_3|CP022411.1_1696609_1696897_+	COG3526, COG3526, Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]	NA|298aa|down_4|CP022411.1_1696890_1697784_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|255aa|down_5|CP022411.1_1697967_1698732_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|272aa|down_6|CP022411.1_1698866_1699682_+	COG2908, COG2908, Uncharacterized protein conserved in bacteria [Function unknown]	NA|197aa|down_7|CP022411.1_1699766_1700357_-	COG4341, COG4341, Predicted HD phosphohydrolase [General function prediction only]	NA|104aa|down_8|CP022411.1_1700371_1700683_-	pfam06127, DUF962, Protein of unknown function (DUF962)	NA|343aa|down_9|CP022411.1_1700880_1701909_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term
GCA_004011755.1_ASM401175v1	CP022411	Pseudomonas sp. RU47 chromosome, complete genome	4	2135438-2135574	4	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,WYL	Orphan	TTCACTGTCATACACAAAACGTGCAAACGCTCGAGATCAGTTCCCTCTCC	50	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,WYL	NA,NA	NA|345aa|up_9|CP022411.1_2125267_2126302_+	cd05288, PGDH, Prostaglandin dehydrogenases	NA|201aa|up_8|CP022411.1_2126368_2126971_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|383aa|up_7|CP022411.1_2127164_2128313_+	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|183aa|up_6|CP022411.1_2128424_2128973_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|245aa|up_5|CP022411.1_2129051_2129786_-	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr	NA|161aa|up_4|CP022411.1_2129940_2130423_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|461aa|up_3|CP022411.1_2130419_2131802_-	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|228aa|up_2|CP022411.1_2131973_2132657_-	COG2836, COG2836, Uncharacterized conserved protein [Function unknown]	NA|71aa|up_1|CP022411.1_2132649_2132862_-	COG3197, FixS, Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]	NA|817aa|up_0|CP022411.1_2132884_2135335_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|180aa|down_0|CP022411.1_2135613_2136153_-	COG3198, COG3198, Uncharacterized protein conserved in bacteria [Function unknown]	NA|472aa|down_1|CP022411.1_2136164_2137580_-	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|335aa|down_2|CP022411.1_2138104_2139109_+	COG5555, COG5555, Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]	NA|328aa|down_3|CP022411.1_2139162_2140146_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|62aa|down_4|CP022411.1_2140142_2140328_-	cd01324, cbb3_Oxidase_CcoQ, Cytochrome cbb oxidase CcoQ	NA|203aa|down_5|CP022411.1_2140333_2140942_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|481aa|down_6|CP022411.1_2140941_2142384_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|318aa|down_7|CP022411.1_2142866_2143820_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|72aa|down_8|CP022411.1_2143816_2144032_-	pfam05545, FixQ, Cbb3-type cytochrome oxidase component FixQ	NA|203aa|down_9|CP022411.1_2144037_2144646_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional
GCA_004011755.1_ASM401175v1	CP022411	Pseudomonas sp. RU47 chromosome, complete genome	5	2513937-2514041	5	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,WYL	Orphan	CTGTGGGAGCGAGCCTGCTCGCGAAGGCGGCCTG	34	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,WYL	NA|524aa|up_6|CP022411.1_2505247_2506819_-,NA|404aa|up_4|CP022411.1_2509237_2510449_+,NA|64aa|up_2|CP022411.1_2511235_2511427_-,NA|311aa|down_6|CP022411.1_2520505_2521438_-	NA|149aa|up_9|CP022411.1_2502688_2503135_+	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|372aa|up_8|CP022411.1_2503141_2504257_-	pfam11876, DUF3396, Protein of unknown function (DUF3396)	NA|317aa|up_7|CP022411.1_2504300_2505251_-	pfam08929, DUF1911, Domain of unknown function (DUF1911)	NA|524aa|up_6|CP022411.1_2505247_2506819_-	NA	NA|764aa|up_5|CP022411.1_2506815_2509107_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|404aa|up_4|CP022411.1_2509237_2510449_+	NA	NA|211aa|up_3|CP022411.1_2510480_2511113_+	COG4257, Vgb, Streptogramin lyase [Defense mechanisms]	NA|64aa|up_2|CP022411.1_2511235_2511427_-	NA	NA|499aa|up_1|CP022411.1_2511625_2513122_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|86aa|up_0|CP022411.1_2513259_2513517_+	pfam07865, DUF1652, Protein of unknown function (DUF1652)	NA|200aa|down_0|CP022411.1_2514475_2515075_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|256aa|down_1|CP022411.1_2515199_2515967_-	PRK07035, PRK07035, SDR family oxidoreductase	NA|356aa|down_2|CP022411.1_2515989_2517057_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|132aa|down_3|CP022411.1_2517247_2517643_+	pfam14107, DUF4280, Domain of unknown function (DUF4280)	NA|181aa|down_4|CP022411.1_2517870_2518413_-	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown]	NA|670aa|down_5|CP022411.1_2518425_2520435_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|311aa|down_6|CP022411.1_2520505_2521438_-	NA	NA|847aa|down_7|CP022411.1_2521496_2524037_-	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|342aa|down_8|CP022411.1_2524039_2525065_-	TIGR03347, VI_chp_1, type VI secretion protein, VC_A0111 family	NA|598aa|down_9|CP022411.1_2525028_2526822_-	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family
GCA_004011755.1_ASM401175v1	CP022411	Pseudomonas sp. RU47 chromosome, complete genome	6	2792213-2792307	6	CRISPRCasFinder	no		PD-DExK,DEDDh,csa3,DinG,cas3,WYL	Orphan	TGTGGGAGTGAGCCTGCTCGCGA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,csa3,DinG,cas3,WYL	NA|238aa|up_8|CP022411.1_2784823_2785537_-,NA|105aa|up_3|CP022411.1_2789126_2789441_-,NA|408aa|down_3|CP022411.1_2794132_2795356_+,NA|225aa|down_4|CP022411.1_2795348_2796023_+,NA|120aa|down_6|CP022411.1_2798743_2799103_+	NA|433aa|up_9|CP022411.1_2783159_2784458_-	TIGR02608, hypothetical_protein, delta-60 repeat domain	NA|238aa|up_8|CP022411.1_2784823_2785537_-	NA	NA|135aa|up_7|CP022411.1_2785751_2786156_-	cd02234, cupin_BLR7677-like, Bradyrhizobium japonicum BLR7677 and related proteins, cupin domain	NA|98aa|up_6|CP022411.1_2786394_2786688_-	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|478aa|up_5|CP022411.1_2786811_2788245_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|147aa|up_4|CP022411.1_2788556_2788997_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|105aa|up_3|CP022411.1_2789126_2789441_-	NA	NA|222aa|up_2|CP022411.1_2789648_2790314_+	smart00965, STN, Secretin and TonB N terminus short domain	NA|184aa|up_1|CP022411.1_2790310_2790862_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|313aa|up_0|CP022411.1_2790893_2791832_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|203aa|down_0|CP022411.1_2792393_2793002_-	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|149aa|down_1|CP022411.1_2792998_2793445_-	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|144aa|down_2|CP022411.1_2793565_2793997_+	pfam11356, T2SSC, Type II secretion system protein C	NA|408aa|down_3|CP022411.1_2794132_2795356_+	NA	NA|225aa|down_4|CP022411.1_2795348_2796023_+	NA	NA|776aa|down_5|CP022411.1_2795997_2798325_+	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50	NA|120aa|down_6|CP022411.1_2798743_2799103_+	NA	NA|314aa|down_7|CP022411.1_2799282_2800224_-	cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs	NA|153aa|down_8|CP022411.1_2800320_2800779_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|135aa|down_9|CP022411.1_2801097_2801502_-	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I
