assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	1	413365-413486	1	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	TGGTCGAGTAGCCCCGCAGGGGCGTATCGAG	31	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA,NA|239aa|down_0|CP028137.1_413637_414354_-,NA|245aa|down_1|CP028137.1_414350_415085_-,NA|375aa|down_8|CP028137.1_422024_423149_-	NA|272aa|up_9|CP028137.1_400453_401269_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|148aa|up_8|CP028137.1_401306_401750_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|319aa|up_7|CP028137.1_401784_402741_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|617aa|up_6|CP028137.1_403150_405001_-	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|491aa|up_5|CP028137.1_405241_406714_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|293aa|up_4|CP028137.1_406858_407737_+	pfam18741, MTES_1575, REase_MTES_1575	NA|333aa|up_3|CP028137.1_407820_408819_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|624aa|up_2|CP028137.1_408857_410729_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|253aa|up_1|CP028137.1_410930_411689_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|505aa|up_0|CP028137.1_411759_413274_+	PRK00047, glpK, glycerol kinase GlpK	NA|239aa|down_0|CP028137.1_413637_414354_-	NA	NA|245aa|down_1|CP028137.1_414350_415085_-	NA	NA|239aa|down_2|CP028137.1_415081_415798_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|284aa|down_3|CP028137.1_415822_416674_-	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase and Choline Kinase family	NA|531aa|down_4|CP028137.1_416670_418263_-	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|276aa|down_5|CP028137.1_418259_419087_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|427aa|down_6|CP028137.1_419521_420802_-	COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production and conversion]	NA|410aa|down_7|CP028137.1_420798_422028_-	COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]	NA|375aa|down_8|CP028137.1_422024_423149_-	NA	NA|85aa|down_9|CP028137.1_423330_423585_+	COG3889, COG3889, Predicted solute binding protein [General function prediction only]
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	3	881491-881582	3	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	GTAGGGCGCGGAGCGGCCGTATCGAGA	27	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA,NA	NA|422aa|up_9|CP028137.1_871698_872964_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|198aa|up_8|CP028137.1_873036_873630_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|241aa|up_7|CP028137.1_873786_874509_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|268aa|up_6|CP028137.1_874505_875309_+	PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional	NA|346aa|up_5|CP028137.1_875305_876343_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|353aa|up_4|CP028137.1_876407_877466_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|227aa|up_3|CP028137.1_877493_878174_+	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|181aa|up_2|CP028137.1_878276_878819_-	cd04332, YbaK_like, YbaK-like	NA|386aa|up_1|CP028137.1_878895_880053_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|418aa|up_0|CP028137.1_880045_881299_+	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|618aa|down_0|CP028137.1_881802_883656_+	PRK05667, dnaG, DNA primase; Validated	NA|546aa|down_1|CP028137.1_883954_885592_+	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|360aa|down_2|CP028137.1_885657_886737_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|352aa|down_3|CP028137.1_886740_887796_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|580aa|down_4|CP028137.1_887792_889532_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|285aa|down_5|CP028137.1_889558_890413_+	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters	NA|308aa|down_6|CP028137.1_890409_891333_+	cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|372aa|down_7|CP028137.1_891613_892729_+	pfam05175, MTS, Methyltransferase small domain	NA|276aa|down_8|CP028137.1_892855_893683_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|189aa|down_9|CP028137.1_893734_894301_-	PRK00150, def, peptide deformylase; Reviewed
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	4	1416401-1416496	4	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	TGCTGGTCGAGTAGCCGCCTCCGGCGGC	28	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA|212aa|up_1|CP028137.1_1415019_1415655_+,NA|120aa|up_0|CP028137.1_1415925_1416285_+,NA	NA|137aa|up_9|CP028137.1_1400068_1400479_-	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|153aa|up_8|CP028137.1_1400554_1401013_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|247aa|up_7|CP028137.1_1401120_1401861_-	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|319aa|up_6|CP028137.1_1401857_1402814_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|1125aa|up_5|CP028137.1_1403067_1406442_+	cd18819, GH43_LbAraf43-like, Glycosyl hydrolase family 43 proteins similar to Lactobacillus brevis alpha-L-arabinofuranosidase LbAraf43 and Geobacillus thermoleovorans GbtXyl43B	NA|1131aa|up_4|CP028137.1_1406565_1409958_+	cd18818, GH43_GbtXyl43B-like, Glycosyl hydrolase family 43 such as Geobacillus thermoleovorans IT-08 beta-xylosidase/exo-xylanase (GbtXyl43B)	NA|371aa|up_3|CP028137.1_1410422_1411535_-	pfam14200, RicinB_lectin_2, Ricin-type beta-trefoil lectin domain-like	NA|1060aa|up_2|CP028137.1_1411752_1414932_+	cd08983, GH43_Bt3655-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 arabinofuranosidase Bt3655	NA|212aa|up_1|CP028137.1_1415019_1415655_+	NA	NA|120aa|up_0|CP028137.1_1415925_1416285_+	NA	NA|434aa|down_0|CP028137.1_1416863_1418165_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|1111aa|down_1|CP028137.1_1418714_1422047_-	PRK09525, lacZ, beta-galactosidase	NA|562aa|down_2|CP028137.1_1422178_1423864_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|288aa|down_3|CP028137.1_1423936_1424800_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|343aa|down_4|CP028137.1_1424895_1425924_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|340aa|down_5|CP028137.1_1426340_1427360_-	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors	NA|301aa|down_6|CP028137.1_1427356_1428259_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_7|CP028137.1_1428267_1429149_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|447aa|down_8|CP028137.1_1429198_1430539_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|490aa|down_9|CP028137.1_1430631_1432101_-	cd08995, GH32_EcAec43-like, Glycosyl hydrolase family 32, such as the putative glycoside hydrolase Escherichia coli Aec43 (FosGH2)
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	5	1416638-1416735	5	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	TGCTGGTCGAGTAGCCGCCTCCGGCGGC	28	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA|212aa|up_1|CP028137.1_1415019_1415655_+,NA|120aa|up_0|CP028137.1_1415925_1416285_+,NA	NA|137aa|up_9|CP028137.1_1400068_1400479_-	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|153aa|up_8|CP028137.1_1400554_1401013_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|247aa|up_7|CP028137.1_1401120_1401861_-	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|319aa|up_6|CP028137.1_1401857_1402814_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|1125aa|up_5|CP028137.1_1403067_1406442_+	cd18819, GH43_LbAraf43-like, Glycosyl hydrolase family 43 proteins similar to Lactobacillus brevis alpha-L-arabinofuranosidase LbAraf43 and Geobacillus thermoleovorans GbtXyl43B	NA|1131aa|up_4|CP028137.1_1406565_1409958_+	cd18818, GH43_GbtXyl43B-like, Glycosyl hydrolase family 43 such as Geobacillus thermoleovorans IT-08 beta-xylosidase/exo-xylanase (GbtXyl43B)	NA|371aa|up_3|CP028137.1_1410422_1411535_-	pfam14200, RicinB_lectin_2, Ricin-type beta-trefoil lectin domain-like	NA|1060aa|up_2|CP028137.1_1411752_1414932_+	cd08983, GH43_Bt3655-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 arabinofuranosidase Bt3655	NA|212aa|up_1|CP028137.1_1415019_1415655_+	NA	NA|120aa|up_0|CP028137.1_1415925_1416285_+	NA	NA|434aa|down_0|CP028137.1_1416863_1418165_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|1111aa|down_1|CP028137.1_1418714_1422047_-	PRK09525, lacZ, beta-galactosidase	NA|562aa|down_2|CP028137.1_1422178_1423864_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|288aa|down_3|CP028137.1_1423936_1424800_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|343aa|down_4|CP028137.1_1424895_1425924_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|340aa|down_5|CP028137.1_1426340_1427360_-	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors	NA|301aa|down_6|CP028137.1_1427356_1428259_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_7|CP028137.1_1428267_1429149_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|447aa|down_8|CP028137.1_1429198_1430539_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|490aa|down_9|CP028137.1_1430631_1432101_-	cd08995, GH32_EcAec43-like, Glycosyl hydrolase family 32, such as the putative glycoside hydrolase Escherichia coli Aec43 (FosGH2)
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	6	2252115-2252201	6	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	CGGGGCTACTCGACCAACATGGA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA,NA	NA|247aa|up_9|CP028137.1_2240745_2241486_+	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline	NA|260aa|up_8|CP028137.1_2241577_2242357_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|273aa|up_7|CP028137.1_2242359_2243178_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|496aa|up_6|CP028137.1_2243256_2244744_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|177aa|up_5|CP028137.1_2245105_2245636_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|199aa|up_4|CP028137.1_2246068_2246665_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|510aa|up_3|CP028137.1_2246661_2248191_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|223aa|up_2|CP028137.1_2248189_2248858_+	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|384aa|up_1|CP028137.1_2249408_2250560_-	pfam01594, AI-2E_transport, AI-2E family transporter	NA|418aa|up_0|CP028137.1_2250660_2251914_-	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]	NA|635aa|down_0|CP028137.1_2252236_2254141_-	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|296aa|down_1|CP028137.1_2254251_2255139_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|267aa|down_2|CP028137.1_2255125_2255926_-	pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase	NA|365aa|down_3|CP028137.1_2255922_2257017_-	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|512aa|down_4|CP028137.1_2257158_2258694_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|401aa|down_5|CP028137.1_2258822_2260025_+	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|298aa|down_6|CP028137.1_2259998_2260892_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|289aa|down_7|CP028137.1_2260891_2261758_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|128aa|down_8|CP028137.1_2262155_2262539_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|199aa|down_9|CP028137.1_2262761_2263358_-	pfam13649, Methyltransf_25, Methyltransferase domain
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	7	2753921-2754069	7	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	GGGTCTCGATACGCCCGCTGCGCGGACTACTCGACCAGCATGTTCGCG	48	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA,NA	NA|66aa|up_9|CP028137.1_2741818_2742016_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|409aa|up_8|CP028137.1_2742332_2743559_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|197aa|up_7|CP028137.1_2743753_2744344_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|489aa|up_6|CP028137.1_2744429_2745896_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|207aa|up_5|CP028137.1_2745914_2746535_-	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|312aa|up_4|CP028137.1_2746531_2747467_-	TIGR01136, Cysteine_synthase, cysteine synthase	NA|848aa|up_3|CP028137.1_2747719_2750263_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|777aa|up_2|CP028137.1_2750565_2752896_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|161aa|up_1|CP028137.1_2752912_2753395_-	pfam14342, DUF4396, Domain of unknown function (DUF4396)	NA|133aa|up_0|CP028137.1_2753483_2753882_-	pfam05610, DUF779, Protein of unknown function (DUF779)	NA|525aa|down_0|CP028137.1_2754260_2755835_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|431aa|down_1|CP028137.1_2755953_2757246_-	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|323aa|down_2|CP028137.1_2757254_2758223_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|281aa|down_3|CP028137.1_2758341_2759184_+	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|334aa|down_4|CP028137.1_2759231_2760233_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|187aa|down_5|CP028137.1_2760470_2761031_+	cd06259, YdcF-like, YdcF-like	NA|1152aa|down_6|CP028137.1_2761056_2764512_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|375aa|down_7|CP028137.1_2764595_2765720_+	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|281aa|down_8|CP028137.1_2765990_2766833_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|276aa|down_9|CP028137.1_2766933_2767761_-	pfam15698, Phosphatase, Phosphatase
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	8	2785384-2785467	8	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	CCATGCTGGTCGAGTAGCCCGCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA|149aa|up_4|CP028137.1_2781957_2782404_+,NA|114aa|down_4|CP028137.1_2790182_2790524_+,NA|80aa|down_5|CP028137.1_2790839_2791079_+,NA|129aa|down_9|CP028137.1_2795942_2796329_-	NA|121aa|up_9|CP028137.1_2777432_2777795_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|733aa|up_8|CP028137.1_2777862_2780061_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|141aa|up_7|CP028137.1_2780092_2780515_+	pfam13788, DUF4180, Domain of unknown function (DUF4180)	NA|171aa|up_6|CP028137.1_2780562_2781075_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|247aa|up_5|CP028137.1_2781119_2781860_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|149aa|up_4|CP028137.1_2781957_2782404_+	NA	NA|120aa|up_3|CP028137.1_2782400_2782760_+	pfam12993, DUF3877, Domain of unknown function, E	NA|281aa|up_2|CP028137.1_2782792_2783635_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|310aa|up_1|CP028137.1_2783670_2784600_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|193aa|up_0|CP028137.1_2784790_2785369_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|434aa|down_0|CP028137.1_2785921_2787223_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|155aa|down_1|CP028137.1_2787649_2788114_-	pfam12823, DUF3817, Domain of unknown function (DUF3817)	NA|422aa|down_2|CP028137.1_2788319_2789585_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|187aa|down_3|CP028137.1_2789436_2789997_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|114aa|down_4|CP028137.1_2790182_2790524_+	NA	NA|80aa|down_5|CP028137.1_2790839_2791079_+	NA	NA|437aa|down_6|CP028137.1_2791075_2792386_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|734aa|down_7|CP028137.1_2792447_2794649_-	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|371aa|down_8|CP028137.1_2794786_2795899_-	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs	NA|129aa|down_9|CP028137.1_2795942_2796329_-	NA
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	9	2785695-2785785	9	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	CCATGCTGGTCGAGTAGCCCGCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA|149aa|up_4|CP028137.1_2781957_2782404_+,NA|114aa|down_4|CP028137.1_2790182_2790524_+,NA|80aa|down_5|CP028137.1_2790839_2791079_+,NA|129aa|down_9|CP028137.1_2795942_2796329_-	NA|121aa|up_9|CP028137.1_2777432_2777795_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|733aa|up_8|CP028137.1_2777862_2780061_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|141aa|up_7|CP028137.1_2780092_2780515_+	pfam13788, DUF4180, Domain of unknown function (DUF4180)	NA|171aa|up_6|CP028137.1_2780562_2781075_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|247aa|up_5|CP028137.1_2781119_2781860_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|149aa|up_4|CP028137.1_2781957_2782404_+	NA	NA|120aa|up_3|CP028137.1_2782400_2782760_+	pfam12993, DUF3877, Domain of unknown function, E	NA|281aa|up_2|CP028137.1_2782792_2783635_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|310aa|up_1|CP028137.1_2783670_2784600_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|193aa|up_0|CP028137.1_2784790_2785369_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|434aa|down_0|CP028137.1_2785921_2787223_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|155aa|down_1|CP028137.1_2787649_2788114_-	pfam12823, DUF3817, Domain of unknown function (DUF3817)	NA|422aa|down_2|CP028137.1_2788319_2789585_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|187aa|down_3|CP028137.1_2789436_2789997_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|114aa|down_4|CP028137.1_2790182_2790524_+	NA	NA|80aa|down_5|CP028137.1_2790839_2791079_+	NA	NA|437aa|down_6|CP028137.1_2791075_2792386_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|734aa|down_7|CP028137.1_2792447_2794649_-	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92	NA|371aa|down_8|CP028137.1_2794786_2795899_-	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs	NA|129aa|down_9|CP028137.1_2795942_2796329_-	NA
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	10	3234214-3234316	10	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	GCGGCGTATCGAGACCCGGAAGCACAGCGCGC	32	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA|78aa|up_8|CP028137.1_3222690_3222924_-,NA|233aa|up_4|CP028137.1_3229628_3230327_+,NA|94aa|up_2|CP028137.1_3231857_3232139_+,NA|183aa|down_9|CP028137.1_3244673_3245222_+	NA|332aa|up_9|CP028137.1_3221613_3222609_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|78aa|up_8|CP028137.1_3222690_3222924_-	NA	NA|145aa|up_7|CP028137.1_3222990_3223425_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|768aa|up_6|CP028137.1_3225807_3228111_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|263aa|up_5|CP028137.1_3228691_3229480_-	pfam13803, DUF4184, Domain of unknown function (DUF4184)	NA|233aa|up_4|CP028137.1_3229628_3230327_+	NA	NA|490aa|up_3|CP028137.1_3230298_3231768_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|94aa|up_2|CP028137.1_3231857_3232139_+	NA	NA|222aa|up_1|CP028137.1_3232338_3233004_+	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs	NA|279aa|up_0|CP028137.1_3233123_3233960_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|305aa|down_0|CP028137.1_3234333_3235248_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|370aa|down_1|CP028137.1_3235244_3236354_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|415aa|down_2|CP028137.1_3236369_3237614_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|346aa|down_3|CP028137.1_3237687_3238725_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|696aa|down_4|CP028137.1_3238821_3240909_+	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism]	NA|368aa|down_5|CP028137.1_3241232_3242336_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|66aa|down_6|CP028137.1_3242490_3242688_+	pfam11273, DUF3073, Protein of unknown function (DUF3073)	NA|166aa|down_7|CP028137.1_3242884_3243382_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|318aa|down_8|CP028137.1_3243437_3244391_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|183aa|down_9|CP028137.1_3244673_3245222_+	NA
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	11	3723422-3723553	11	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	GCGTGCCCGAGGTGGCGGCGGGTGTGCTCCGGCTCGTGGA	40	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA|186aa|up_9|CP028137.1_3716812_3717370_+,NA|78aa|up_6|CP028137.1_3718488_3718722_+,NA|117aa|up_3|CP028137.1_3720443_3720794_-,NA|143aa|up_2|CP028137.1_3720972_3721401_-,NA|174aa|up_0|CP028137.1_3722732_3723254_-,NA|74aa|down_1|CP028137.1_3724540_3724762_-,NA|107aa|down_5|CP028137.1_3727372_3727693_+	NA|186aa|up_9|CP028137.1_3716812_3717370_+	NA	NA|95aa|up_8|CP028137.1_3717574_3717859_-	pfam08922, DUF1905, Domain of unknown function (DUF1905)	NA|198aa|up_7|CP028137.1_3717969_3718563_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|78aa|up_6|CP028137.1_3718488_3718722_+	NA	NA|252aa|up_5|CP028137.1_3719010_3719766_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|192aa|up_4|CP028137.1_3719840_3720416_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|117aa|up_3|CP028137.1_3720443_3720794_-	NA	NA|143aa|up_2|CP028137.1_3720972_3721401_-	NA	NA|211aa|up_1|CP028137.1_3722054_3722687_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|174aa|up_0|CP028137.1_3722732_3723254_-	NA	NA|259aa|down_0|CP028137.1_3723641_3724418_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|74aa|down_1|CP028137.1_3724540_3724762_-	NA	NA|307aa|down_2|CP028137.1_3724854_3725775_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|166aa|down_3|CP028137.1_3725847_3726345_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|285aa|down_4|CP028137.1_3726429_3727284_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|107aa|down_5|CP028137.1_3727372_3727693_+	NA	NA|192aa|down_6|CP028137.1_3727999_3728575_+	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain	NA|340aa|down_7|CP028137.1_3728575_3729595_-	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|116aa|down_8|CP028137.1_3729906_3730254_+	pfam11774, Lsr2, Lsr2	NA|494aa|down_9|CP028137.1_3731194_3732676_+	PRK14995, PRK14995, SmvA family efflux MFS transporter
GCA_004011135.1_ASM401113v1	CP028137	Rathayibacter festucae DSM 15932 chromosome, complete genome	12	3784683-3784821	12	CRISPRCasFinder	no		WYL,PD-DExK,DEDDh,csa3,cas3,RT	Orphan	TTCCGCGTGCCGGAGGTGGCCGGGACGGAGGTCCGGCTCGCGGTTCC	47	0	0	NA	NA	NA	1	1	Orphan	WYL,PD-DExK,DEDDh,csa3,cas3,RT	NA|677aa|up_6|CP028137.1_3774886_3776917_+,NA	NA|319aa|up_9|CP028137.1_3771580_3772537_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|307aa|up_8|CP028137.1_3772533_3773454_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|367aa|up_7|CP028137.1_3773456_3774557_+	cd18614, GH130, Glycosyl hydrolase family 130; uncharacterized	NA|677aa|up_6|CP028137.1_3774886_3776917_+	NA	NA|261aa|up_5|CP028137.1_3777483_3778266_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|219aa|up_4|CP028137.1_3778994_3779651_-	pfam01638, HxlR, HxlR-like helix-turn-helix	NA|145aa|up_3|CP028137.1_3779656_3780091_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|437aa|up_2|CP028137.1_3781194_3782505_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|346aa|up_1|CP028137.1_3782648_3783686_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|303aa|up_0|CP028137.1_3783682_3784591_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|343aa|down_0|CP028137.1_3785091_3786120_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|247aa|down_1|CP028137.1_3786213_3786954_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|254aa|down_2|CP028137.1_3787816_3788578_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|153aa|down_3|CP028137.1_3788619_3789078_+	PRK06848, PRK06848, cytidine deaminase	NA|202aa|down_4|CP028137.1_3789666_3790272_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|464aa|down_5|CP028137.1_3790264_3791656_+	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|538aa|down_6|CP028137.1_3791740_3793354_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|350aa|down_7|CP028137.1_3793414_3794464_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|563aa|down_8|CP028137.1_3794486_3796175_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|264aa|down_9|CP028137.1_3796219_3797011_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
