The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	0	65104	4285328	protease,tRNA,transposase	Natrialba_phage(12.5%)	56	NA	NA
AZY79689.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY79690.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY79691.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY79692.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY79693.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY79694.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY79695.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY79696.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY79697.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY79698.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY79699.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY79700.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY79701.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY79702.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY83215.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY79703.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79704.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY79705.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY79706.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79707.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY79708.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79709.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY79710.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY83216.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79711.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY79712.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY79713.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79714.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79715.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
AZY79716.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY79717.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY79718.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY79719.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY79720.1|42367_43261_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY79721.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY79722.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY79723.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY79724.1|44712_45663_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79725.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79726.1|46769_47006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY79727.1|47133_48027_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79728.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY79729.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY79730.1|51190_52141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79731.1|52183_53440_+	MFS transporter	NA	NA	NA	NA	NA
AZY79732.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY79733.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY79734.1|56026_56716_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY79735.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY79736.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79737.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79738.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY79739.1|61523_61943_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY79740.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79741.1|63491_64328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79742.1|64522_65104_-|protease	protease	protease	NA	NA	NA	NA
>prophage 2
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	70134	123122	4285328	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
AZY79747.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79748.1|71178_71493_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY79749.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY79750.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY79751.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY79752.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83217.1|76329_77079_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79753.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY79754.1|78683_79634_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83218.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79755.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY79756.1|83871_84576_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY79757.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY79758.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
AZY79759.1|86530_87763_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY79760.1|87780_89040_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY79761.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY79762.1|90159_91260_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY79763.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY79764.1|91842_92895_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY83219.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY79765.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY79766.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79767.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY79768.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY79769.1|97252_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY79770.1|98388_99228_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY79771.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79772.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY79773.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY79774.1|102837_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY79775.1|103857_104133_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY79776.1|104140_104803_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY79777.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY79778.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY79779.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY79780.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY79781.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79782.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY79783.1|111601_112231_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY79784.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY79785.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY83220.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY79786.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83221.1|115993_117010_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY79787.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY79788.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY79789.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79790.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY79791.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY79792.1|122171_123122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	165941	226452	4285328	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY79824.1|165941_166892_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79825.1|168335_169238_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79826.1|169215_169845_-	LemA family protein	NA	NA	NA	NA	NA
AZY79827.1|170175_171558_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY79828.1|171591_172221_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY79829.1|172269_173877_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY79830.1|173901_174585_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83226.1|174666_175143_-	bacterioferritin	NA	NA	NA	NA	NA
AZY79831.1|175349_176300_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79832.1|177415_177943_+	lipoprotein	NA	NA	NA	NA	NA
AZY79833.1|178034_178850_+	lipoprotein	NA	NA	NA	NA	NA
AZY79834.1|178910_179645_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY79835.1|179682_181761_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY79836.1|182010_182283_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79837.1|182381_183470_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY79838.1|183473_185378_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY79839.1|185374_189049_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY79840.1|189109_189673_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY79841.1|189680_190103_-	glyoxalase	NA	NA	NA	NA	NA
AZY79842.1|190130_190550_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY83227.1|190578_191025_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY79843.1|191151_191649_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79844.1|191803_194074_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY79845.1|194122_195355_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY79846.1|195453_196404_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79847.1|196449_197142_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY79848.1|197138_198032_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY79849.1|198426_199527_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY79850.1|199608_199983_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY79851.1|200042_202907_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY79852.1|203051_203792_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79853.1|203861_205073_+	CoA transferase	NA	NA	NA	NA	NA
AZY79854.1|205101_206070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79855.1|206683_207634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79856.1|207790_208114_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY79857.1|208218_209268_-	cyclase	NA	NA	NA	NA	NA
AZY79858.1|209264_210089_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY79859.1|210089_210386_-	YciI family protein	NA	NA	NA	NA	NA
AZY79860.1|210411_210687_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY79861.1|210743_211388_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY79862.1|211387_212074_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY83228.1|212203_213055_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79863.1|213105_213831_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY79864.1|213862_215212_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY79865.1|215323_216256_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY79866.1|216713_219509_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY79867.1|220102_223045_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY79868.1|223116_223836_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY79869.1|223874_224423_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY79870.1|224577_225477_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY79871.1|225501_226452_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	234384	287972	4285328	protease,tRNA,transposase	Bacillus_phage(25.0%)	48	NA	NA
AZY79879.1|234384_235335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79880.1|235421_236372_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79881.1|236368_237319_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79882.1|237417_238215_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY79883.1|239164_239575_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY79884.1|240596_241340_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79885.1|241383_242427_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79886.1|242597_244700_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79887.1|246110_247067_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79888.1|247085_247577_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY79889.1|247573_248929_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY79890.1|248929_249628_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY79891.1|249624_250326_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY79892.1|250578_251628_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY79893.1|251733_252675_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY79894.1|252671_254561_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY79895.1|254647_255286_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83229.1|255428_256673_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY79896.1|256744_257281_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY79897.1|257432_258824_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY79898.1|258840_259821_-	AEC family transporter	NA	NA	NA	NA	NA
AZY79899.1|259956_260940_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY79900.1|261004_261904_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79901.1|262010_263765_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY79902.1|263772_264897_-	CoA transferase	NA	NA	NA	NA	NA
AZY79903.1|264910_265891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79904.1|266621_267572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79905.1|268131_268677_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79906.1|268760_270380_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY79907.1|270395_271550_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY79908.1|271563_271689_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY79909.1|271685_273437_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY79910.1|273433_275113_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY79911.1|275148_275724_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY79912.1|276866_277145_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY79913.1|278188_279139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79914.1|279125_279341_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79915.1|279416_279578_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY79916.1|279585_279726_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79917.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY79918.1|280703_281315_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY79919.1|281473_282328_-	cytochrome c1	NA	NA	NA	NA	NA
AZY79920.1|282347_283730_-	cytochrome b	NA	NA	NA	NA	NA
AZY79921.1|283794_284436_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY79922.1|284575_285034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY79923.1|285058_285835_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY83230.1|285888_287025_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY79924.1|287021_287972_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	556357	615657	4285328	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY80146.1|556357_557308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80147.1|558631_559408_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY80148.1|559442_561215_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY80149.1|561216_562119_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY80150.1|562243_562603_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY80151.1|562634_563597_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY80152.1|563695_564646_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80153.1|564658_565594_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY80154.1|565653_566493_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY80155.1|566489_567659_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY80156.1|567655_568945_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80157.1|568987_569362_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY80158.1|569467_570205_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY80159.1|570212_570917_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY80160.1|571180_572701_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY80161.1|572756_573320_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY80162.1|573338_574370_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY80163.1|574366_575155_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY80164.1|575330_576320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80165.1|578076_579027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80166.1|580249_581152_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80167.1|581153_582008_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY80168.1|582054_583164_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY80169.1|583174_583693_-	flavin reductase	NA	NA	NA	NA	NA
AZY80170.1|583722_584355_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY80171.1|584426_585086_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY80172.1|585082_586303_-	MFS transporter	NA	NA	NA	NA	NA
AZY80173.1|586571_587444_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY80174.1|587599_588337_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80175.1|588339_589935_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY83251.1|590066_591056_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY80176.1|591052_591763_+	oxidoreductase	NA	NA	NA	NA	NA
AZY83252.1|591858_592875_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY80177.1|593146_593773_-	aminotransferase	NA	NA	NA	NA	NA
AZY80178.1|593828_594956_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY80179.1|594961_600679_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY80180.1|600962_601178_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80181.1|601246_602191_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY80182.1|602379_603315_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY80183.1|603432_605004_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80184.1|605083_606292_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY80185.1|606789_607707_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY80186.1|610067_610289_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83253.1|610619_611636_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY80187.1|611720_611972_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY80188.1|611975_612791_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY80189.1|612903_613782_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY80190.1|613893_615657_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	621812	675553	4285328	transposase	Salmonella_phage(33.33%)	48	NA	NA
AZY80194.1|621812_622763_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80195.1|622831_623830_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY80196.1|623834_624515_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY80197.1|624652_625045_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY83254.1|625152_626169_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY80198.1|626408_627194_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY80199.1|627288_628698_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY80200.1|628708_629509_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY80201.1|629529_630300_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY80202.1|630342_630810_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY80203.1|630806_631757_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80204.1|633705_634584_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY80205.1|635510_638489_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80206.1|638487_638856_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80207.1|638842_639793_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80208.1|639789_640878_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80209.1|640913_641777_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY80210.1|642916_643306_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY80211.1|643309_644092_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY80212.1|644125_644878_-	KR domain-containing protein	NA	NA	NA	NA	NA
AZY80213.1|645186_646326_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80214.1|646322_647114_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY80215.1|647110_647860_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY80216.1|647856_648729_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY80217.1|648728_649730_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY80218.1|649726_650890_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY80219.1|650915_651599_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80220.1|651552_652887_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY80221.1|652879_653974_+	CoA transferase	NA	NA	NA	NA	NA
AZY83255.1|654740_655691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80222.1|657631_658891_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80223.1|658887_660426_+	SpoVR family protein	NA	NA	NA	NA	NA
AZY80224.1|660422_661619_-	MFS transporter	NA	NA	NA	NA	NA
AZY80225.1|661615_663007_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY80226.1|663003_664020_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY80227.1|664088_665324_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY80228.1|665424_666219_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80229.1|666588_666996_+	GFA family protein	NA	NA	NA	NA	NA
AZY80230.1|667413_667686_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY80231.1|668267_669122_+	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY80232.1|669222_669525_+	urease subunit gamma	NA	NA	NA	NA	NA
AZY80233.1|669551_670187_+	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY80234.1|670203_670512_+	urease subunit beta	NA	NA	NA	NA	NA
AZY80235.1|670508_672224_+	urease subunit alpha	NA	NA	NA	NA	NA
AZY80236.1|672226_672844_+	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY80237.1|672944_673529_+	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY80238.1|673553_674198_+	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY80239.1|674602_675553_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	724440	764441	4285328	transposase,tRNA,protease,integrase	Pseudomonas_phage(33.33%)	32	721739:721757	741627:741645
721739:721757	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY80276.1|724440_725088_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY80277.1|725084_725867_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY80278.1|725939_727031_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY80279.1|727310_728438_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY80280.1|728779_729826_+	Fic family protein	NA	NA	NA	NA	NA
AZY83258.1|729836_729977_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY80281.1|729973_733093_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY80282.1|733094_736046_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY80283.1|736061_737273_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY80284.1|737269_737470_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80285.1|737456_738407_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80286.1|738423_738918_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY80287.1|738921_739179_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80288.1|739203_740634_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY80289.1|740703_741000_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AZY80290.1|741783_742734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
741627:741645	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY80291.1|743152_745717_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY80292.1|745761_747615_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80293.1|747947_749519_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY80294.1|750960_751911_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80295.1|751996_752737_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80296.1|752963_753911_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80297.1|755298_756249_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80298.1|756235_756424_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80299.1|756442_757258_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80300.1|757390_758830_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY80301.1|758843_759185_+	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY80302.1|759239_760895_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY80303.1|761046_762057_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY80304.1|762189_762963_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80305.1|763306_763504_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80306.1|763490_764441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	774368	821986	4285328	transposase,holin	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
AZY80314.1|774368_775319_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80315.1|775457_776210_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY80316.1|776448_778173_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY80317.1|778192_779452_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY80318.1|779466_780561_-	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY80319.1|780557_782684_-	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY80320.1|782696_783377_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY83262.1|783654_785028_+	MFS transporter	NA	NA	NA	NA	NA
AZY80321.1|785029_786049_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY80322.1|786112_787084_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80323.1|787148_788099_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80324.1|788197_789040_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY80325.1|789039_789375_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY80326.1|789445_790864_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY80327.1|791143_792184_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY80328.1|792263_792515_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY80329.1|792625_793924_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY80330.1|794072_794927_+	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY80331.1|794923_795814_+	acyltransferase	NA	NA	NA	NA	NA
AZY80332.1|795856_796768_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY80333.1|796794_797487_+	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY80334.1|797501_798482_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY80335.1|798494_800636_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY80336.1|800684_801653_-	nickel transporter	NA	NA	NA	NA	NA
AZY83263.1|801643_802267_-	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY80337.1|802272_803208_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80338.1|803204_804101_-	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY80339.1|804097_804820_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY80340.1|804810_805011_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80341.1|805148_805652_+	transcriptional repressor	NA	NA	NA	NA	NA
AZY80342.1|805928_807044_+	GTP-binding protein	NA	NA	NA	NA	NA
AZY80343.1|807186_807651_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY80344.1|807798_808338_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY80345.1|808359_809694_+	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY83264.1|809707_810013_-	RND transporter	NA	NA	NA	NA	NA
AZY80346.1|810437_811019_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY80347.1|811100_812051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80348.1|812149_813100_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80349.1|813540_814446_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY80350.1|814501_816109_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY80351.1|816362_817868_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY80352.1|817882_818347_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY80353.1|818636_819587_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80354.1|819749_820280_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80355.1|820279_820591_+	cell division protein ZapA	NA	NA	NA	NA	NA
AZY80356.1|821035_821986_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	1006201	1100238	4285328	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY80496.1|1006201_1007152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80497.1|1007254_1007917_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80498.1|1008019_1008430_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80499.1|1008534_1009536_+	amidase	NA	NA	NA	NA	NA
AZY80500.1|1009538_1010735_+	CoA transferase	NA	NA	NA	NA	NA
AZY80501.1|1010755_1011559_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY80502.1|1011639_1011936_+	histidine kinase	NA	NA	NA	NA	NA
AZY80503.1|1011966_1012530_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY83278.1|1012570_1013428_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY80504.1|1013435_1014185_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY80505.1|1014206_1015079_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80506.1|1015107_1015887_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY80507.1|1015920_1016718_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80508.1|1018169_1019342_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY80509.1|1019372_1019765_+	RidA family protein	NA	NA	NA	NA	NA
AZY80510.1|1019758_1020619_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY80511.1|1020622_1021585_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY83279.1|1022361_1023051_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY80512.1|1023911_1024862_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80513.1|1025211_1026081_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80514.1|1026151_1026847_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY80515.1|1026836_1027346_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY80516.1|1027342_1028563_+	MFS transporter	NA	NA	NA	NA	NA
AZY80517.1|1028510_1029413_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80518.1|1030299_1031586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80519.1|1031624_1032998_+	amidase	NA	NA	NA	NA	NA
AZY80520.1|1033036_1033738_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY80521.1|1034036_1035026_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY80522.1|1035126_1035588_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY80523.1|1035603_1036152_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY80524.1|1036293_1037769_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY80525.1|1037874_1038966_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY80526.1|1038969_1039752_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY80527.1|1039761_1040550_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY80528.1|1041675_1042110_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY80529.1|1042106_1043117_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY80530.1|1043160_1044087_-	VOC family protein	NA	NA	NA	NA	NA
AZY80531.1|1044373_1044742_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY83280.1|1044958_1045909_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83281.1|1045890_1048380_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY80532.1|1048428_1049121_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY80533.1|1049193_1050393_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY80534.1|1050410_1051316_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80535.1|1051431_1052361_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY83282.1|1052386_1053733_+	MFS transporter	NA	NA	NA	NA	NA
AZY83283.1|1053760_1054510_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY80536.1|1054523_1055306_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY80537.1|1055498_1056449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80538.1|1056510_1057656_-	porin	NA	NA	NA	NA	NA
AZY80539.1|1058132_1058969_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY80540.1|1059038_1060004_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80541.1|1060000_1060951_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80542.1|1060937_1061132_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80543.1|1061336_1061879_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80544.1|1062914_1063865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80545.1|1064106_1064475_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80546.1|1064520_1065645_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83284.1|1066779_1067520_-	oxidoreductase	NA	NA	NA	NA	NA
AZY80547.1|1067623_1068244_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80548.1|1068347_1069298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80549.1|1069294_1071403_-	AsmA family protein	NA	NA	NA	NA	NA
AZY80550.1|1071547_1072207_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY80551.1|1072238_1072703_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY80552.1|1072978_1073164_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80553.1|1073215_1073968_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY80554.1|1073974_1075237_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80555.1|1075278_1076517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80556.1|1077594_1078722_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY80557.1|1078732_1079560_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY80558.1|1079546_1080413_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY80559.1|1081779_1082184_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80560.1|1082275_1083226_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83285.1|1083595_1084507_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY80561.1|1084521_1085232_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80562.1|1085228_1086473_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY80563.1|1086474_1086909_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY80564.1|1086937_1087243_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY80565.1|1087136_1087355_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80566.1|1087341_1088292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80567.1|1088348_1089497_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY80568.1|1089577_1090528_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80569.1|1091059_1091857_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80570.1|1091904_1092558_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY80571.1|1092514_1093603_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY80572.1|1093767_1095993_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY80573.1|1098270_1099167_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY80574.1|1099055_1099301_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80575.1|1099287_1100238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	1130624	1201596	4285328	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY80604.1|1130624_1131575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80605.1|1131631_1132744_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY80606.1|1135127_1136078_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80607.1|1136668_1137445_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY80608.1|1137562_1137826_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY80609.1|1137926_1138931_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY80610.1|1139131_1140733_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY80611.1|1140758_1141517_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY80612.1|1141608_1142265_-	adenylate kinase	NA	NA	NA	NA	NA
AZY80613.1|1142355_1143120_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY80614.1|1143129_1143318_-	hypothetical protein	NA	NA	NA	NA	NA
AZY80615.1|1143373_1144417_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY80616.1|1144413_1144827_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY80617.1|1144823_1145444_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY80618.1|1145724_1146675_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80619.1|1146842_1148234_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY80620.1|1148306_1148885_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY80621.1|1149001_1150399_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY80622.1|1150514_1151720_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY80623.1|1151819_1152338_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY80624.1|1152432_1152678_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY80625.1|1152905_1153220_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY80626.1|1153309_1158499_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY83287.1|1158495_1160664_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY80627.1|1160683_1163035_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY80628.1|1163039_1164359_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY80629.1|1164377_1166051_+	MCE family protein	NA	NA	NA	NA	NA
AZY80630.1|1166055_1166724_+	lipoprotein	NA	NA	NA	NA	NA
AZY80631.1|1166880_1170702_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY80632.1|1171032_1171983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80633.1|1172004_1173150_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80634.1|1173298_1174228_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY80635.1|1174224_1175313_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY80636.1|1175309_1176113_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY80637.1|1176109_1176841_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY80638.1|1176898_1178188_-	MFS transporter	NA	NA	NA	NA	NA
AZY80639.1|1178284_1178887_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80640.1|1183441_1183780_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY80641.1|1184448_1184754_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80642.1|1186460_1187411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80643.1|1187407_1188739_-	MFS transporter	NA	NA	NA	NA	NA
AZY80644.1|1189978_1192000_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY80645.1|1191992_1192634_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY80646.1|1192630_1193038_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY80647.1|1193034_1193835_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY80648.1|1193909_1194614_+	oxidoreductase	NA	NA	NA	NA	NA
AZY80649.1|1194645_1195440_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY80650.1|1195436_1196387_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80651.1|1196485_1197436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80652.1|1197534_1197969_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY80653.1|1198051_1200388_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY83288.1|1200579_1201596_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	1301816	1359027	4285328	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY80731.1|1301816_1302767_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80732.1|1306513_1307125_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY80733.1|1307347_1308808_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY80734.1|1308904_1310497_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY80735.1|1310483_1310762_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80736.1|1310820_1311108_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY80737.1|1311109_1312450_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY80738.1|1312545_1313235_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80739.1|1313247_1314678_+	MFS transporter	NA	NA	NA	NA	NA
AZY80740.1|1316402_1317224_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80741.1|1317234_1318806_+	amidohydrolase	NA	NA	NA	NA	NA
AZY80742.1|1318834_1319812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80743.1|1319838_1320642_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY80744.1|1320638_1321433_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY80745.1|1321440_1322676_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY80746.1|1322668_1323103_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY80747.1|1323852_1324803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80748.1|1325424_1327152_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY80749.1|1327263_1328622_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY80750.1|1328742_1328928_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80751.1|1328914_1329865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80752.1|1329905_1330976_+	FUSC family protein	NA	NA	NA	NA	NA
AZY83294.1|1330998_1331877_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY80753.1|1332048_1333020_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY80754.1|1333182_1334025_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY80755.1|1334186_1334867_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY80756.1|1334860_1336030_+	amine oxidase	NA	NA	NA	NA	NA
AZY80757.1|1336026_1337058_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY80758.1|1337101_1338343_+	MFS transporter	NA	NA	NA	NA	NA
AZY80759.1|1338377_1339910_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY80760.1|1339990_1340614_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY80761.1|1340644_1341256_+	LysE family translocator	NA	NA	NA	NA	NA
AZY80762.1|1341291_1341762_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY80763.1|1342193_1343198_+	peptidase M20	NA	NA	NA	NA	NA
AZY80764.1|1343234_1344749_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY80765.1|1344752_1345712_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY80766.1|1345740_1346544_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY80767.1|1346545_1348180_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY80768.1|1348263_1349325_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY80769.1|1349523_1349793_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80770.1|1349796_1350321_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY80771.1|1350736_1351687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80772.1|1351683_1352754_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY80773.1|1352826_1353465_+	DedA family protein	NA	NA	NA	NA	NA
AZY80774.1|1353759_1353987_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY80775.1|1354109_1354823_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY80776.1|1355067_1356018_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80777.1|1356121_1356403_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80778.1|1356517_1357966_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY80779.1|1358076_1359027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	1449260	1513476	4285328	protease,tRNA,transposase	Salmonella_phage(16.67%)	60	NA	NA
AZY80861.1|1449260_1450211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80862.1|1450377_1450731_+	cytochrome C	NA	NA	NA	NA	NA
AZY80863.1|1450743_1451106_+	cytochrome	NA	NA	NA	NA	NA
AZY80864.1|1451147_1451573_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY80865.1|1451775_1453032_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY80866.1|1453230_1454211_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80867.1|1454360_1455602_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AZY80868.1|1455700_1456651_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80869.1|1456659_1457355_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY80870.1|1460176_1460776_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY80871.1|1460786_1462952_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY80872.1|1462975_1464760_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY80873.1|1464759_1464849_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY80874.1|1465543_1465816_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY80875.1|1465815_1467882_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY80876.1|1467878_1468829_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80877.1|1468927_1469878_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80878.1|1469993_1470326_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY80879.1|1470322_1471009_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY80880.1|1470995_1471955_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY83302.1|1471996_1474357_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY80881.1|1474356_1474989_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY80882.1|1475051_1476431_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY80883.1|1476477_1477833_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY80884.1|1478111_1478360_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80885.1|1478547_1478865_-	virulence factor	NA	NA	NA	NA	NA
AZY80886.1|1479137_1479653_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY80887.1|1479746_1479908_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80888.1|1479923_1480679_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY80889.1|1481017_1481224_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80890.1|1481231_1481891_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY80891.1|1482185_1484390_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY80892.1|1484500_1485724_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY80893.1|1485846_1486821_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY80894.1|1486888_1488082_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY80895.1|1488096_1488897_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY80896.1|1488893_1490750_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY80897.1|1490746_1491352_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY80898.1|1491370_1492756_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY80899.1|1493481_1494708_+	transporter	NA	NA	NA	NA	NA
AZY80900.1|1494796_1495579_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY80901.1|1495677_1496628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY80902.1|1496654_1497428_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY80903.1|1497439_1498681_+	MFS transporter	NA	NA	NA	NA	NA
AZY80904.1|1500497_1501325_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AZY80905.1|1501326_1502037_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY80906.1|1502033_1502633_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY83303.1|1502741_1503335_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AZY80907.1|1503386_1503569_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AZY80908.1|1503625_1504684_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AZY80909.1|1504683_1505670_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AZY80910.1|1505751_1506687_+	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AZY80911.1|1506688_1507441_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AZY83304.1|1507623_1507863_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AZY80912.1|1508052_1509282_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AZY80913.1|1509283_1509784_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80914.1|1509780_1510380_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AZY80915.1|1510392_1510893_+	hypothetical protein	NA	NA	NA	NA	NA
AZY80916.1|1510889_1511951_+	siderophore-interacting protein	NA	NA	NA	NA	NA
AZY80917.1|1511988_1513476_+|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 14
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	1743211	1856873	4285328	protease,tRNA,transposase	Moraxella_phage(11.11%)	102	NA	NA
AZY81108.1|1743211_1744162_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81109.1|1744260_1746861_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY81110.1|1746967_1747972_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81111.1|1748080_1749421_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY81112.1|1749461_1750490_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81113.1|1750685_1751231_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81114.1|1751227_1751788_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY81115.1|1751886_1752837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81116.1|1752874_1753462_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY81117.1|1753479_1753863_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY81118.1|1755222_1756515_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY81119.1|1756649_1757690_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY83313.1|1757787_1758804_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY81120.1|1759071_1759719_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY81121.1|1759844_1760603_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY83314.1|1760677_1761367_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY81122.1|1761384_1762269_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY81123.1|1762265_1763045_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY81124.1|1763071_1763749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83315.1|1764037_1764790_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81125.1|1764908_1766309_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY81126.1|1766332_1766731_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY81127.1|1766906_1767107_+	copper chaperone	NA	NA	NA	NA	NA
AZY81128.1|1767245_1767974_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY81129.1|1768107_1769523_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY81130.1|1769526_1770390_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY81131.1|1770402_1771152_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY81132.1|1771334_1773350_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY83316.1|1773331_1773880_-	arylesterase	NA	NA	NA	NA	NA
AZY81133.1|1773956_1774676_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY81134.1|1774774_1775725_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81135.1|1775823_1776774_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81136.1|1776922_1777261_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY81137.1|1777318_1777480_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY81138.1|1777511_1777712_-	CsbD family protein	NA	NA	NA	NA	NA
AZY81139.1|1777977_1780551_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY81140.1|1780621_1783195_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY81141.1|1785721_1786210_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY81142.1|1786301_1787453_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY81143.1|1787506_1788328_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY81144.1|1788366_1789596_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY81145.1|1789724_1790165_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY81146.1|1790109_1790289_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81147.1|1790275_1791226_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81148.1|1791324_1792275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81149.1|1792271_1792745_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY81150.1|1792906_1793845_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81151.1|1793846_1795055_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY81152.1|1795159_1795666_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY81153.1|1795668_1798530_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY81154.1|1798519_1799485_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY81155.1|1799544_1801539_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY81156.1|1801637_1802588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81157.1|1802584_1802959_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81158.1|1803220_1804429_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY81159.1|1804425_1806726_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY81160.1|1806778_1809391_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY81161.1|1809750_1811676_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY81162.1|1811672_1812569_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY81163.1|1812575_1813715_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY81164.1|1813714_1814536_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY81165.1|1816106_1816436_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY81166.1|1816818_1818075_+	autotransporter Phg	NA	NA	NA	NA	NA
AZY81167.1|1818149_1818431_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81168.1|1818472_1818793_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81169.1|1819099_1819303_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY81170.1|1819386_1819953_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY81171.1|1820298_1820499_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY81172.1|1820610_1821189_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY81173.1|1821367_1822678_+	trigger factor	NA	NA	NA	NA	NA
AZY81174.1|1822680_1823334_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY81175.1|1823438_1824743_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY81176.1|1824931_1827385_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY81177.1|1827508_1828459_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81178.1|1828686_1829910_+	CoA transferase	NA	NA	NA	NA	NA
AZY81179.1|1829975_1830947_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY81180.1|1830959_1831415_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY81181.1|1831428_1832232_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY81182.1|1832228_1832660_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81183.1|1832656_1833814_+	thiolase	NA	NA	NA	NA	NA
AZY81184.1|1833835_1834612_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY81185.1|1836776_1837493_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY81186.1|1837485_1838127_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY81187.1|1838161_1838893_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81188.1|1838910_1839123_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81189.1|1839693_1840644_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81190.1|1842201_1842930_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY81191.1|1842980_1844183_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY81192.1|1844260_1846297_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY81193.1|1846549_1847041_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY81194.1|1847256_1847769_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY81195.1|1847786_1848998_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY81196.1|1849035_1849446_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY81197.1|1849447_1849771_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY81198.1|1849773_1850286_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY81199.1|1850415_1852278_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY81200.1|1852287_1852629_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY81201.1|1852628_1852823_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY81202.1|1852947_1853841_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY81203.1|1853837_1854788_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81204.1|1854912_1855722_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY81205.1|1855922_1856873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	1884656	1925347	4285328	protease,tRNA,transposase	Klosneuvirus(25.0%)	36	NA	NA
AZY81225.1|1884656_1887281_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY81226.1|1887267_1887522_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY81227.1|1887588_1888170_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81228.1|1888473_1888734_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY81229.1|1888899_1889523_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY81230.1|1889522_1890296_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY81231.1|1890292_1891501_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY81232.1|1891526_1892000_-	RidA family protein	NA	NA	NA	NA	NA
AZY81233.1|1892073_1893024_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81234.1|1893122_1894073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81235.1|1894171_1895521_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY81236.1|1896286_1897042_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY81237.1|1897134_1900017_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY81238.1|1900339_1900765_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY81239.1|1900792_1901941_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY81240.1|1901937_1902444_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY81241.1|1902450_1903746_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY81242.1|1903786_1905091_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY81243.1|1905092_1905731_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81244.1|1905733_1906894_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY81245.1|1906920_1908276_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY81246.1|1908279_1909350_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY81247.1|1909488_1909725_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY81248.1|1909812_1910919_+	GTPase HflX	NA	NA	NA	NA	NA
AZY81249.1|1910884_1912189_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY81250.1|1912207_1913107_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY81251.1|1913290_1914448_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY81252.1|1914512_1915820_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY81253.1|1915933_1916473_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY81254.1|1916750_1916963_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY81255.1|1916982_1919013_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY83318.1|1919812_1921981_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY81256.1|1922390_1922690_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81257.1|1922974_1923388_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY81258.1|1923347_1924298_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81259.1|1924396_1925347_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	1936551	1985947	4285328	transposase	Klosneuvirus(16.67%)	44	NA	NA
AZY81273.1|1936551_1937502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81274.1|1937498_1938773_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY81275.1|1938870_1940070_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY81276.1|1940066_1940720_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY81277.1|1940716_1942153_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY81278.1|1942140_1942500_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY81279.1|1943472_1944423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81280.1|1945468_1947334_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY83320.1|1947591_1949112_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY81281.1|1949199_1949850_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY81282.1|1950798_1952094_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY81283.1|1952115_1953000_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81284.1|1953098_1953974_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY81285.1|1953963_1954320_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY81286.1|1954393_1955425_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY81287.1|1955554_1955734_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY81288.1|1955831_1956356_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY81289.1|1956366_1957203_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY81290.1|1957315_1957687_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY81291.1|1957683_1958235_+	ATPase	NA	NA	NA	NA	NA
AZY81292.1|1958250_1959942_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY81293.1|1959990_1960671_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81294.1|1960918_1961383_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81295.1|1961552_1962482_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY81296.1|1962494_1963142_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81297.1|1963215_1965033_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY81298.1|1965116_1966067_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81299.1|1966719_1967670_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81300.1|1967688_1968036_-	GFA family protein	NA	NA	NA	NA	NA
AZY81301.1|1968064_1969504_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY81302.1|1969522_1969918_-	VOC family protein	NA	NA	NA	NA	NA
AZY81303.1|1970092_1970701_+	peptidase S16	NA	NA	NA	NA	NA
AZY81304.1|1970713_1971532_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY81305.1|1971483_1972458_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY81306.1|1972486_1973548_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81307.1|1973544_1975761_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY81308.1|1975774_1976233_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY81309.1|1976390_1976735_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81310.1|1976891_1977797_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83321.1|1977883_1978897_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY83322.1|1980876_1981893_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY81311.1|1982035_1983388_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY81312.1|1983562_1983859_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81313.1|1984996_1985947_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	2247231	2308579	4285328	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZY81512.1|2247231_2248182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81513.1|2248298_2249018_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81514.1|2249190_2250177_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81515.1|2250177_2250660_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY81516.1|2250663_2251947_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY81517.1|2251943_2252882_+	CoA ester lyase	NA	NA	NA	NA	NA
AZY81518.1|2252878_2254588_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY81519.1|2254597_2255845_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY83334.1|2257455_2258745_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY81520.1|2259882_2260656_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY81521.1|2261317_2262061_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81522.1|2262135_2262876_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81523.1|2263071_2263908_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81524.1|2263958_2264729_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY81525.1|2264778_2265831_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY81526.1|2265827_2266454_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY81527.1|2266450_2267497_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY81528.1|2267663_2268680_+	folate-binding protein	NA	NA	NA	NA	NA
AZY83335.1|2268778_2269729_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81529.1|2272469_2273759_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY81530.1|2273877_2274348_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY81531.1|2274358_2275567_-	flavohemoprotein	NA	NA	NA	NA	NA
AZY81532.1|2275713_2276178_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY81533.1|2276201_2277152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81534.1|2278136_2278910_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY81535.1|2278906_2279905_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81536.1|2279989_2280766_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY81537.1|2280921_2282589_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY81538.1|2282906_2284031_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81539.1|2284157_2284781_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81540.1|2284777_2286679_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY81541.1|2286727_2287522_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY81542.1|2287534_2288536_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY81543.1|2288532_2289039_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY81544.1|2289031_2289880_-	hydrolase	NA	NA	NA	NA	NA
AZY81545.1|2289977_2290520_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81546.1|2290563_2291514_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81547.1|2291669_2291996_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZY81548.1|2291992_2292277_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY81549.1|2292273_2292753_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY81550.1|2292749_2294378_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY81551.1|2294374_2294719_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY81552.1|2294718_2297652_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY81553.1|2298810_2299761_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81554.1|2299859_2300156_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81555.1|2300262_2301180_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81556.1|2301184_2301898_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY81557.1|2301911_2302883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY81558.1|2304602_2304983_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81559.1|2304986_2306174_+	MFS transporter	NA	NA	NA	NA	NA
AZY83336.1|2306612_2307335_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY81560.1|2307628_2308579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	2329370	2400524	4285328	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
AZY81575.1|2329370_2330321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81576.1|2330873_2332499_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY83341.1|2332548_2333583_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY81577.1|2333585_2334932_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83342.1|2334928_2336443_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY81578.1|2336433_2337444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81579.1|2337917_2338859_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY81580.1|2338867_2339836_-	AAA family ATPase	NA	NA	NA	NA	NA
AZY81581.1|2341375_2342344_+	transporter	NA	NA	NA	NA	NA
AZY81582.1|2342521_2343511_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY81583.1|2343557_2344316_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY81584.1|2344505_2345243_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY81585.1|2345341_2346292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81586.1|2346476_2347259_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY81587.1|2347252_2347954_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY81588.1|2348193_2348796_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81589.1|2350122_2351073_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81590.1|2351069_2352626_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZY81591.1|2352618_2353392_-	oxidoreductase	NA	NA	NA	NA	NA
AZY81592.1|2353450_2354401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81593.1|2354482_2355658_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY81594.1|2355671_2357729_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY81595.1|2357725_2358751_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY81596.1|2358762_2360052_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY81597.1|2360074_2361172_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY81598.1|2361168_2362059_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY81599.1|2362055_2364140_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY81600.1|2364171_2365341_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY81601.1|2365382_2366123_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY81602.1|2366122_2366893_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY81603.1|2367748_2368534_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY81604.1|2368560_2370645_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81605.1|2370812_2372768_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY83343.1|2373091_2373592_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY81606.1|2373690_2375217_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY83344.1|2375354_2376242_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81607.1|2376256_2377210_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY81608.1|2377261_2379352_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZY81609.1|2379367_2379754_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY81610.1|2382447_2383251_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY81611.1|2384544_2385447_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81612.1|2385511_2386288_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY81613.1|2386609_2387659_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81614.1|2387782_2389453_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY81615.1|2389457_2390252_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY81616.1|2390350_2391301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81617.1|2391320_2392226_-	pirin family protein	NA	NA	NA	NA	NA
AZY81618.1|2392303_2393002_-	pirin family protein	NA	NA	NA	NA	NA
AZY81619.1|2393161_2394106_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81620.1|2394115_2395606_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY81621.1|2395602_2396670_-	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY81622.1|2396733_2398146_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY81623.1|2398331_2399552_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY81624.1|2399573_2400524_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	2441466	2503313	4285328	protease,tRNA,transposase	Planktothrix_phage(14.29%)	60	NA	NA
AZY81663.1|2441466_2442417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81664.1|2442515_2443124_-	recombination protein RecR	NA	NA	NA	NA	NA
AZY81665.1|2443174_2443501_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY81666.1|2443547_2445773_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY81667.1|2446440_2449845_-	nuclease	NA	NA	NA	NA	NA
AZY81668.1|2449857_2452518_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81669.1|2452721_2453924_-	MFS transporter	NA	NA	NA	NA	NA
AZY81670.1|2454610_2455723_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY81671.1|2455729_2456680_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81672.1|2456778_2457180_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY81673.1|2457252_2457831_-|protease	protease	protease	NA	NA	NA	NA
AZY83347.1|2457948_2458437_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY81674.1|2458450_2459383_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY81675.1|2459420_2460308_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY81676.1|2460465_2462160_+	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY81677.1|2462176_2463433_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY81678.1|2463570_2464116_-	acyl dehydratase	NA	NA	NA	NA	NA
AZY81679.1|2464147_2465707_-	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY81680.1|2465835_2466588_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY81681.1|2466609_2467302_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY81682.1|2467324_2468116_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81683.1|2468142_2469048_-	agmatinase	NA	NA	NA	NA	NA
AZY81684.1|2469240_2470077_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81685.1|2470168_2471191_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY81686.1|2471327_2472380_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY81687.1|2472384_2473575_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY81688.1|2473577_2474057_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY81689.1|2474242_2474722_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY81690.1|2474729_2474966_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81691.1|2474985_2475387_-	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY81692.1|2475389_2475641_-	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY81693.1|2475695_2476577_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY81694.1|2476801_2477248_+	GFA family protein	NA	NA	NA	NA	NA
AZY81695.1|2477332_2478397_-	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY81696.1|2478533_2479115_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY81697.1|2479349_2480480_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY81698.1|2480657_2481884_+	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY81699.1|2481942_2482458_+	transporter	NA	NA	NA	NA	NA
AZY81700.1|2482480_2482807_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY81701.1|2482840_2484031_+	formate dehydrogenase	NA	NA	NA	NA	NA
AZY81702.1|2484104_2484509_+	GFA family protein	NA	NA	NA	NA	NA
AZY81703.1|2484725_2485676_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81704.1|2485774_2486545_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY81705.1|2486541_2487213_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY81706.1|2487209_2487851_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY81707.1|2487863_2488784_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY81708.1|2488944_2490105_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81709.1|2490146_2491097_-	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY81710.1|2491695_2491920_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81711.1|2492084_2493779_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY81712.1|2493900_2494170_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY81713.1|2494285_2494684_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY81714.1|2494694_2495651_-	glutathione synthetase	NA	NA	NA	NA	NA
AZY81715.1|2495787_2496333_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY81716.1|2496353_2498303_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY81717.1|2498690_2499467_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY81718.1|2499472_2499865_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81719.1|2500286_2501237_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81720.1|2501233_2502331_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY81721.1|2502362_2503313_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	2507147	2565391	4285328	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AZY81724.1|2507147_2508098_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81725.1|2508577_2509234_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY81726.1|2509248_2510916_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY81727.1|2510918_2511548_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81728.1|2511759_2512854_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81729.1|2512998_2513811_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY81730.1|2513814_2515518_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY81731.1|2515568_2516699_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY81732.1|2516885_2517962_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY83348.1|2518043_2518694_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY81733.1|2518708_2520142_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY81734.1|2520395_2521214_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81735.1|2521210_2521915_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY81736.1|2522814_2523930_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81737.1|2523963_2524338_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81738.1|2524360_2525518_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY81739.1|2525530_2525764_-	lipoprotein	NA	NA	NA	NA	NA
AZY81740.1|2526398_2529368_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY81741.1|2529382_2529592_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY81742.1|2529743_2530373_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81743.1|2530369_2532487_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY81744.1|2532483_2533164_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY81745.1|2533160_2533721_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY81746.1|2533727_2534825_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY81747.1|2534962_2535571_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY81748.1|2535567_2536860_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY81749.1|2536873_2537416_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY81750.1|2537425_2538262_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY81751.1|2538295_2539357_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY81752.1|2539398_2540451_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY81753.1|2540466_2540769_-	hypothetical protein	NA	NA	NA	NA	NA
AZY81754.1|2540910_2541861_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81755.1|2542039_2543734_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY81756.1|2543730_2544816_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY81757.1|2544863_2545763_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81758.1|2545773_2546418_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY81759.1|2547439_2550682_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY81760.1|2550692_2551790_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY81761.1|2552052_2553036_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY81762.1|2553134_2554085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81763.1|2554183_2555134_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81764.1|2555143_2555833_-	VIT family protein	NA	NA	NA	NA	NA
AZY81765.1|2555892_2556330_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY81766.1|2556375_2557269_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY81767.1|2557316_2558489_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY81768.1|2558485_2559640_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY81769.1|2559836_2560187_-	RnfH family protein	NA	NA	NA	NA	NA
AZY81770.1|2560176_2560611_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY81771.1|2560627_2561578_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81772.1|2561725_2562193_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY81773.1|2562173_2563331_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY81774.1|2563396_2564323_-	paraslipin	NA	NA	NA	NA	NA
AZY81775.1|2564440_2565391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	2607671	2674171	4285328	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY81814.1|2607671_2608622_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81815.1|2608991_2609564_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY81816.1|2609566_2610577_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY81817.1|2610569_2611070_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY81818.1|2611080_2611422_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY81819.1|2611433_2612225_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY81820.1|2612241_2612511_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY81821.1|2612533_2613322_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY83352.1|2613368_2614385_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY81822.1|2614601_2616044_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY81823.1|2616222_2617842_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY81824.1|2617962_2619783_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY81825.1|2619861_2621394_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY81826.1|2621427_2623074_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY81827.1|2623143_2624166_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY81828.1|2624183_2625317_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY81829.1|2625319_2626009_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY81830.1|2626008_2626794_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY81831.1|2626837_2627602_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY81832.1|2627640_2629062_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY81833.1|2629127_2629832_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY81834.1|2629879_2630299_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY81835.1|2630311_2630719_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY83353.1|2630902_2631613_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY81836.1|2631739_2632030_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY81837.1|2632047_2632530_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY81838.1|2637035_2638190_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY83354.1|2638495_2639512_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY81839.1|2639758_2640547_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY81840.1|2640613_2641294_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY81841.1|2641290_2642061_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY81842.1|2642159_2643110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81843.1|2643165_2644083_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY81844.1|2644093_2645272_-	mandelate racemase	NA	NA	NA	NA	NA
AZY81845.1|2645291_2646287_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY81846.1|2647875_2648484_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY81847.1|2648471_2649512_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY81848.1|2649529_2650492_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY81849.1|2650488_2651682_-	CoA transferase	NA	NA	NA	NA	NA
AZY81850.1|2651678_2652476_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY81851.1|2652501_2653488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY81852.1|2653506_2655546_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY83355.1|2655747_2656428_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81853.1|2656441_2657353_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY81854.1|2657349_2657928_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY81855.1|2658066_2658972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81856.1|2658979_2662399_+	nuclease	NA	NA	NA	NA	NA
AZY81857.1|2662386_2664987_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY81858.1|2665942_2666575_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY81859.1|2666968_2667727_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81860.1|2667723_2668926_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY81861.1|2669113_2670064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY81862.1|2670971_2672117_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY83356.1|2672136_2672859_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY81863.1|2672975_2673155_+	hypothetical protein	NA	NA	NA	NA	NA
AZY81864.1|2673220_2674171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	2878283	2959559	4285328	tRNA,transposase	Planktothrix_phage(16.67%)	59	NA	NA
AZY82028.1|2878283_2879234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82029.1|2879230_2880133_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82030.1|2880220_2880979_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY82031.1|2880991_2882140_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY82032.1|2882180_2883608_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY82033.1|2883837_2885052_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY82034.1|2885097_2887968_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY82035.1|2890378_2890867_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY82036.1|2890992_2893689_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY82037.1|2893843_2896126_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY82038.1|2896289_2896922_+	fimbrial protein	NA	NA	NA	NA	NA
AZY82039.1|2897020_2897971_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY82040.1|2898017_2898572_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY82041.1|2898639_2899485_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY82042.1|2899554_2900523_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY82043.1|2900522_2902319_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82044.1|2904218_2908145_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY82045.1|2908435_2908612_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82046.1|2908880_2912111_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY82047.1|2912392_2913220_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY82048.1|2913253_2913949_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY82049.1|2913941_2915222_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY82050.1|2915231_2916209_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83372.1|2916190_2917891_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZY82051.1|2917993_2919097_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY82052.1|2919127_2919883_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY82053.1|2919889_2921410_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY82054.1|2921452_2921755_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82055.1|2921751_2922384_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82056.1|2922462_2924328_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY82057.1|2924324_2925140_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY82058.1|2925147_2926263_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY82059.1|2927167_2928046_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY82060.1|2928045_2928870_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY82061.1|2929037_2929988_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82062.1|2930170_2933050_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY82063.1|2933031_2933808_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY82064.1|2933900_2935364_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY82065.1|2935360_2935732_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY82066.1|2935749_2937063_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82067.1|2937099_2937558_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY82068.1|2937670_2938621_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82069.1|2938617_2939631_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY82070.1|2939770_2940757_+	homoserine kinase	NA	NA	NA	NA	NA
AZY82071.1|2940800_2941601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82072.1|2942403_2943354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82073.1|2943505_2944108_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82074.1|2944126_2944759_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY82075.1|2944996_2946883_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY82076.1|2946901_2947744_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY82077.1|2947740_2949099_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY82078.1|2949319_2950114_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY82079.1|2950344_2951838_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY82080.1|2952073_2954155_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY82081.1|2954349_2955390_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY82082.1|2955524_2956541_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY82083.1|2956562_2957420_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY83373.1|2957464_2958241_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY82084.1|2958608_2959559_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	2968627	3017565	4285328	tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY82092.1|2968627_2969041_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY82093.1|2969081_2969399_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY82094.1|2969483_2970200_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83374.1|2970463_2971885_+	siroheme synthase	NA	NA	NA	NA	NA
AZY82095.1|2971951_2974699_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY83375.1|2975031_2976048_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY83376.1|2976383_2977025_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY82096.1|2977115_2978552_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY82097.1|2978709_2979783_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY82098.1|2979779_2980916_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY82099.1|2981060_2981405_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY82100.1|2981471_2983352_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY82101.1|2983401_2984337_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY83377.1|2984669_2985686_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY82102.1|2986623_2988051_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY82103.1|2988047_2989070_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY82104.1|2989059_2989533_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY82105.1|2989658_2990561_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY82106.1|2990557_2992201_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY83378.1|2992197_2993205_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY83379.1|2994035_2995052_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY82107.1|2995151_2995784_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY82108.1|2995792_2996182_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY82109.1|2996234_2997287_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY82110.1|2998150_2999857_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY82111.1|2999930_3000431_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY82112.1|3000445_3002503_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY82113.1|3002529_3002823_-	response regulator	NA	NA	NA	NA	NA
AZY82114.1|3002924_3003872_-	motility protein MotB	NA	NA	NA	NA	NA
AZY82115.1|3003884_3004760_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY82116.1|3004880_3005441_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY82117.1|3005475_3005799_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY82118.1|3006234_3006972_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY82119.1|3007270_3008221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82120.1|3008464_3008728_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY82121.1|3008801_3009083_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82122.1|3009099_3009960_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY82123.1|3009956_3010292_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82124.1|3010345_3010996_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY82125.1|3012676_3013621_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82126.1|3013666_3013984_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82127.1|3013986_3014925_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY82128.1|3015102_3015588_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY82129.1|3015606_3016155_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY82130.1|3016431_3017565_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	3029172	3101666	4285328	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY82139.1|3029172_3030123_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82140.1|3030165_3031341_+	flagellin FliC	NA	NA	NA	NA	NA
AZY82141.1|3031562_3033353_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY82142.1|3033365_3035027_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY82143.1|3035039_3037745_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY82144.1|3038037_3039792_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY82145.1|3039788_3040415_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY82146.1|3040411_3041263_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY82147.1|3041338_3043453_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY82148.1|3043603_3044254_+	SCO family protein	NA	NA	NA	NA	NA
AZY82149.1|3044399_3044651_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY82150.1|3044720_3046103_-	multidrug transporter	NA	NA	NA	NA	NA
AZY82151.1|3046099_3049279_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY83381.1|3050086_3051004_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82152.1|3051055_3051787_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY82153.1|3051846_3052419_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY83382.1|3053927_3054944_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY82154.1|3055081_3056131_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY82155.1|3056235_3057186_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82156.1|3057281_3058007_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY82157.1|3058217_3058598_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY82158.1|3058903_3059776_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY82159.1|3059783_3060164_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82160.1|3060317_3061592_-	radical SAM protein	NA	NA	NA	NA	NA
AZY83383.1|3063079_3063988_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY82161.1|3064785_3065850_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY82162.1|3067686_3068721_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY82163.1|3068910_3069552_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY82164.1|3069634_3071461_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY82165.1|3071704_3072634_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY82166.1|3072633_3073383_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY82167.1|3073454_3074369_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY82168.1|3074388_3075534_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY82169.1|3075594_3076506_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY82170.1|3076586_3077537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82171.1|3077635_3078220_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY82172.1|3078254_3079244_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY82173.1|3079240_3080182_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY82174.1|3080178_3081399_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY82175.1|3081441_3081756_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY82176.1|3081947_3082307_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY82177.1|3082308_3084039_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY82178.1|3084211_3084883_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY82179.1|3084897_3086226_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY82180.1|3086222_3087122_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY82181.1|3087208_3088294_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY82182.1|3088286_3089420_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY82183.1|3089419_3092101_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY82184.1|3092471_3093053_+	OmpA family protein	NA	NA	NA	NA	NA
AZY82185.1|3093130_3093904_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY82186.1|3093900_3094578_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY82187.1|3094793_3095975_+	MFS transporter	NA	NA	NA	NA	NA
AZY82188.1|3096451_3096709_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82189.1|3096747_3096930_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY82190.1|3096959_3097910_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83384.1|3098039_3098432_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY82191.1|3098708_3099620_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY82192.1|3099744_3100719_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82193.1|3100715_3101666_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	3118877	3194705	4285328	transposase,holin	Bacillus_phage(20.0%)	58	NA	NA
AZY82210.1|3118877_3119828_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82211.1|3121004_3122375_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY82212.1|3122407_3123199_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82213.1|3123211_3124267_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82214.1|3124292_3125168_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82215.1|3125273_3125522_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82216.1|3125556_3127011_-	carboxylase	NA	NA	NA	NA	NA
AZY82217.1|3127007_3127529_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY82218.1|3127557_3128910_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY82219.1|3129133_3132022_-	HD domain-containing protein	NA	NA	NA	NA	NA
AZY82220.1|3134166_3135468_+	phospholipase	NA	NA	NA	NA	NA
AZY82221.1|3135482_3136199_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY82222.1|3136480_3137161_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY82223.1|3137172_3137340_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82224.1|3137448_3137601_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82225.1|3137688_3138348_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY82226.1|3138728_3140579_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY82227.1|3140575_3141526_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82228.1|3142689_3144405_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY82229.1|3144415_3144907_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY82230.1|3144979_3145996_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY82231.1|3146163_3146943_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY82232.1|3146961_3147489_-	lipoprotein	NA	NA	NA	NA	NA
AZY82233.1|3147487_3147694_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82234.1|3147782_3148052_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY82235.1|3148142_3150302_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY82236.1|3150422_3151142_+	lipoprotein	NA	NA	NA	NA	NA
AZY82237.1|3151138_3152089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82238.1|3152229_3153447_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY82239.1|3153440_3154052_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY82240.1|3154685_3155663_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY82241.1|3155806_3156553_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY82242.1|3156574_3157021_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY82243.1|3160061_3160862_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82244.1|3161143_3162376_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY82245.1|3162486_3163476_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82246.1|3163506_3164895_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY82247.1|3166493_3167477_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83386.1|3167673_3168690_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY82248.1|3168886_3169711_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY82249.1|3169788_3170712_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY82250.1|3170792_3172034_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY82251.1|3172067_3173069_+	peptidase M14	NA	NA	NA	NA	NA
AZY82252.1|3173197_3174169_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82253.1|3174193_3176278_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY82254.1|3176344_3177337_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82255.1|3177445_3178780_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY82256.1|3178805_3180818_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY83387.1|3180814_3182863_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY82257.1|3182966_3183614_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY82258.1|3183754_3184249_+	azurin	NA	NA	NA	NA	NA
AZY82259.1|3184292_3184964_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY82260.1|3184978_3186472_-	RND transporter	NA	NA	NA	NA	NA
AZY82261.1|3186468_3189582_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY82262.1|3189594_3190701_-	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY82263.1|3190824_3191493_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY82264.1|3191713_3192664_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82265.1|3192746_3194705_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 26
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	3233148	3306310	4285328	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY82301.1|3233148_3234099_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82302.1|3234095_3235115_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY82303.1|3235124_3237833_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY82304.1|3237980_3238637_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY82305.1|3238735_3239686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82306.1|3239791_3240727_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY82307.1|3240926_3242621_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY82308.1|3242655_3243582_+	VOC family protein	NA	NA	NA	NA	NA
AZY83389.1|3243650_3244748_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82309.1|3244766_3245630_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY82310.1|3245641_3246424_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY82311.1|3246420_3247539_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY82312.1|3247535_3249068_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY82313.1|3249108_3250116_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY82314.1|3250260_3250983_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82315.1|3250998_3252021_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY82316.1|3252337_3253072_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82317.1|3253156_3254902_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY82318.1|3254898_3255651_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY82319.1|3255695_3256652_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82320.1|3256740_3257307_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82321.1|3257314_3258175_-	aminotransferase	NA	NA	NA	NA	NA
AZY82322.1|3258204_3258948_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY82323.1|3258964_3259648_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY82324.1|3260485_3261400_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY82325.1|3261464_3262373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82326.1|3262463_3263888_-	protein CyaE	NA	NA	NA	NA	NA
AZY82327.1|3263889_3265212_-	protein CyaD	NA	NA	NA	NA	NA
AZY82328.1|3265208_3267347_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY82329.1|3267424_3272545_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY83390.1|3272731_3272911_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82330.1|3272993_3273581_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY82331.1|3273596_3275078_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY82332.1|3275132_3276986_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82333.1|3277248_3278586_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY82334.1|3278620_3280618_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY82335.1|3280635_3282684_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY82336.1|3282814_3283681_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82337.1|3283949_3284915_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY82338.1|3285029_3286178_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY82339.1|3286602_3286914_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY82340.1|3286947_3287208_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY82341.1|3287357_3288491_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY82342.1|3288561_3289698_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY82343.1|3289863_3290658_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY82344.1|3290720_3291164_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY82345.1|3291279_3292230_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82346.1|3292216_3292405_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82347.1|3292352_3292760_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY82348.1|3292832_3295028_+	DNA methylase	NA	NA	NA	NA	NA
AZY82349.1|3295249_3296200_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82350.1|3296159_3296684_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY82351.1|3296815_3297787_+	FecR family protein	NA	NA	NA	NA	NA
AZY83391.1|3297906_3300351_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY82352.1|3300366_3300957_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY82353.1|3301200_3302151_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82354.1|3302308_3303574_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY82355.1|3303607_3304705_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY82356.1|3305359_3306310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	3317597	3382493	4285328	transposase,holin	Acidithiobacillus_phage(33.33%)	48	NA	NA
AZY82367.1|3317597_3318548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82368.1|3319279_3319657_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY82369.1|3319641_3320343_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82370.1|3320486_3321179_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY82371.1|3321178_3322282_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY82372.1|3322391_3324764_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY82373.1|3324760_3326320_+	chaperone SurA	NA	NA	NA	NA	NA
AZY83392.1|3329863_3330952_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82374.1|3333230_3334181_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82375.1|3334321_3335539_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY82376.1|3335532_3336144_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY82377.1|3336777_3337755_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY82378.1|3337898_3338645_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY82379.1|3338666_3339113_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY82380.1|3339394_3339580_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82381.1|3342153_3342954_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82382.1|3343235_3344468_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY82383.1|3344578_3345568_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82384.1|3345598_3346987_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY82385.1|3348585_3349569_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83393.1|3349765_3350782_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY82386.1|3350978_3351803_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY82387.1|3351880_3352804_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY82388.1|3352884_3354126_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY82389.1|3354159_3355161_+	peptidase M14	NA	NA	NA	NA	NA
AZY82390.1|3355289_3356261_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82391.1|3356285_3358370_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY82392.1|3358436_3359429_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82393.1|3359537_3360872_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY82394.1|3360897_3362910_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY83394.1|3362906_3364955_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY82395.1|3365058_3365706_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY82396.1|3365846_3366341_+	azurin	NA	NA	NA	NA	NA
AZY82397.1|3366384_3367056_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY82398.1|3367070_3368564_-	RND transporter	NA	NA	NA	NA	NA
AZY82399.1|3368560_3371674_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY82400.1|3371686_3372793_-	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY82401.1|3372916_3373585_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY82402.1|3373805_3374756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82403.1|3374838_3376797_+|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY82404.1|3376824_3377526_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82405.1|3377672_3378488_+	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY82406.1|3378484_3379300_+	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY82407.1|3379316_3380120_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY82408.1|3380103_3380538_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82409.1|3380534_3380969_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY83395.1|3380970_3381570_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82410.1|3381542_3382493_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	3415240	3488402	4285328	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY82439.1|3415240_3416191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82440.1|3416187_3417207_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY82441.1|3417216_3419925_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY82442.1|3420072_3420729_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY82443.1|3420827_3421778_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82444.1|3421883_3422819_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY82445.1|3423018_3424713_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY82446.1|3424747_3425674_+	VOC family protein	NA	NA	NA	NA	NA
AZY83396.1|3425742_3426840_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82447.1|3426858_3427722_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY82448.1|3427733_3428516_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY82449.1|3428512_3429631_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY82450.1|3429627_3431160_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY82451.1|3431200_3432208_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY82452.1|3432352_3433075_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82453.1|3433090_3434113_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY82454.1|3434429_3435164_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82455.1|3435248_3436994_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY82456.1|3436990_3437743_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY82457.1|3437787_3438744_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82458.1|3438832_3439399_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82459.1|3439406_3440267_-	aminotransferase	NA	NA	NA	NA	NA
AZY82460.1|3440296_3441040_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY82461.1|3441056_3441740_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY82462.1|3442577_3443492_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY82463.1|3443556_3444465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82464.1|3444555_3445980_-	protein CyaE	NA	NA	NA	NA	NA
AZY82465.1|3445981_3447304_-	protein CyaD	NA	NA	NA	NA	NA
AZY82466.1|3447300_3449439_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY82467.1|3449516_3454637_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY83397.1|3454823_3455003_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82468.1|3455085_3455673_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY82469.1|3455688_3457170_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY82470.1|3457224_3459078_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82471.1|3459340_3460678_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY82472.1|3460712_3462710_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY82473.1|3462727_3464776_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY82474.1|3464906_3465773_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82475.1|3466041_3467007_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY82476.1|3467121_3468270_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY82477.1|3468694_3469006_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY82478.1|3469039_3469300_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY82479.1|3469449_3470583_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY82480.1|3470653_3471790_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY82481.1|3471955_3472750_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY82482.1|3472812_3473256_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY82483.1|3473371_3474322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82484.1|3474308_3474497_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82485.1|3474444_3474852_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY82486.1|3474924_3477120_+	DNA methylase	NA	NA	NA	NA	NA
AZY82487.1|3477341_3478292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82488.1|3478251_3478776_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY82489.1|3478907_3479879_+	FecR family protein	NA	NA	NA	NA	NA
AZY83398.1|3479998_3482443_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY82490.1|3482458_3483049_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY82491.1|3483292_3484243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82492.1|3484400_3485666_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY82493.1|3485699_3486797_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY82494.1|3487451_3488402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	3499689	3599802	4285328	terminase,tRNA,transposase,tail	uncultured_Caudovirales_phage(13.79%)	108	NA	NA
AZY82505.1|3499689_3500640_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82506.1|3501371_3501749_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY82507.1|3501733_3502435_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82508.1|3502578_3503271_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY82509.1|3503270_3504374_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY82510.1|3504483_3506856_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY82511.1|3506852_3508412_+	chaperone SurA	NA	NA	NA	NA	NA
AZY82512.1|3508436_3509234_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY82513.1|3509265_3510411_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY83399.1|3511960_3513049_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82514.1|3515327_3516278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82515.1|3516264_3516483_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82516.1|3517407_3517965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82517.1|3517940_3518291_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82518.1|3518459_3519254_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY82519.1|3519250_3520300_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY82520.1|3520299_3520989_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY82521.1|3521075_3521573_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY82522.1|3521604_3522921_-	protein TolB	NA	NA	NA	NA	NA
AZY82523.1|3522937_3523912_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY82524.1|3523948_3524407_-	protein TolR	NA	NA	NA	NA	NA
AZY82525.1|3524406_3525087_-	protein TolQ	NA	NA	NA	NA	NA
AZY82526.1|3525089_3525518_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY82527.1|3525570_3527301_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY82528.1|3527366_3527939_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY82529.1|3527919_3528606_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY82530.1|3528961_3529633_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY82531.1|3529639_3529840_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82532.1|3530182_3530464_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82533.1|3530460_3530994_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY82534.1|3530975_3531527_-	lysozyme	NA	NA	NA	NA	NA
AZY82535.1|3531505_3531748_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82536.1|3531752_3532565_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82537.1|3532564_3532828_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82538.1|3533046_3533463_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82539.1|3533467_3537424_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY82540.1|3537416_3537806_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY82541.1|3537802_3538336_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY82542.1|3538403_3538763_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82543.1|3538772_3541385_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY82544.1|3541410_3541701_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY82545.1|3541718_3542048_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY82546.1|3542057_3542576_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY82547.1|3542830_3543331_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY82548.1|3543338_3543761_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82549.1|3543757_3544156_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY82550.1|3544152_3544548_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY82551.1|3544547_3544748_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82552.1|3544749_3545232_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY82553.1|3545294_3545546_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82554.1|3545555_3546203_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY82555.1|3546220_3547171_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82556.1|3547599_3548202_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY82557.1|3548324_3548567_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY83400.1|3548572_3549628_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY82558.1|3549656_3551075_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY82559.1|3551077_3552355_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY82560.1|3552341_3552791_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY82561.1|3553466_3554417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82562.1|3554434_3554656_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82563.1|3554670_3555369_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82564.1|3555361_3555682_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83401.1|3556161_3556773_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY82565.1|3556838_3557051_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82566.1|3557302_3558253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82567.1|3558351_3559425_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82568.1|3559592_3560387_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY82569.1|3560426_3560951_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY82570.1|3560943_3562686_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY82571.1|3562895_3563654_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY82572.1|3563656_3564364_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY82573.1|3564380_3565262_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY82574.1|3565272_3566031_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY83402.1|3565999_3566755_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82575.1|3566824_3568243_+	amidase	NA	NA	NA	NA	NA
AZY82576.1|3568264_3568915_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY82577.1|3569048_3569384_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY82578.1|3569472_3570423_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82579.1|3570499_3572320_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY82580.1|3572324_3573398_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY82581.1|3573520_3574489_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY82582.1|3574562_3575474_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY82583.1|3575492_3576065_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY82584.1|3576145_3576694_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY82585.1|3576693_3578283_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY82586.1|3578352_3578592_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY82587.1|3578632_3579664_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY82588.1|3579723_3580905_-	monooxygenase	NA	NA	NA	NA	NA
AZY82589.1|3581001_3581454_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82590.1|3581463_3582804_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY82591.1|3583120_3584158_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82592.1|3584539_3584899_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83403.1|3584982_3585924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82593.1|3585998_3586949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82594.1|3587242_3588337_+	porin	NA	NA	NA	NA	NA
AZY82595.1|3588418_3589300_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY82596.1|3589321_3590161_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY82597.1|3590236_3591754_+	peptidase	NA	NA	NA	NA	NA
AZY82598.1|3591850_3592951_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY82599.1|3592967_3593390_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY82600.1|3593412_3593625_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY82601.1|3593671_3594592_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY83404.1|3594855_3595524_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY82602.1|3595526_3595856_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY82603.1|3596062_3597496_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY82604.1|3597507_3597891_-	thioredoxin	NA	NA	NA	NA	NA
AZY82605.1|3597952_3598753_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82606.1|3598851_3599802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	3886417	4018283	4285328	tRNA,transposase,integrase	uncultured_Mediterranean_phage(10.34%)	115	3932110:3932127	3974640:3974657
AZY82855.1|3886417_3887368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82856.1|3887467_3888418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82857.1|3888414_3889050_-	transporter	NA	NA	NA	NA	NA
AZY82858.1|3889179_3890079_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY82859.1|3890174_3890666_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY82860.1|3890712_3891678_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82861.1|3892811_3894053_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY82862.1|3894166_3895183_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY82863.1|3895217_3895694_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82864.1|3895836_3896745_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY82865.1|3896858_3897971_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY82866.1|3898071_3898605_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY82867.1|3898693_3899944_+	kynureninase	NA	NA	NA	NA	NA
AZY82868.1|3900045_3900558_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY82869.1|3900463_3900670_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82870.1|3900656_3901607_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82871.1|3901672_3902611_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY82872.1|3902633_3903260_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY82873.1|3903256_3903913_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY82874.1|3903909_3904512_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82875.1|3904518_3905145_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY82876.1|3905286_3905856_+	bacterioferritin	NA	NA	NA	NA	NA
AZY82877.1|3905926_3907246_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY82878.1|3907352_3907544_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY82879.1|3907795_3909085_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY82880.1|3909239_3910235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82881.1|3910319_3910994_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82882.1|3910990_3911941_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82883.1|3912102_3913344_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY82884.1|3913340_3914285_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY82885.1|3914403_3915354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82886.1|3915313_3916243_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82887.1|3916296_3916632_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY82888.1|3916676_3917441_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY82889.1|3917464_3918205_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82890.1|3918212_3919787_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY82891.1|3919800_3920778_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82892.1|3921050_3921650_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY82893.1|3921683_3928586_-	autotransporter BatB	NA	NA	NA	NA	NA
AZY82894.1|3929032_3929164_-	entericidin	NA	NA	NA	NA	NA
AZY82895.1|3929195_3929357_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82896.1|3929429_3929636_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY82897.1|3930640_3931300_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY82898.1|3931327_3932473_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3932110:3932127	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY82899.1|3932613_3932949_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY82900.1|3933023_3933884_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY82901.1|3934147_3934849_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY82902.1|3935018_3935414_+	RidA family protein	NA	NA	NA	NA	NA
AZY82903.1|3935523_3936474_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82904.1|3936509_3936977_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY82905.1|3937210_3937588_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82906.1|3937584_3937767_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82907.1|3937770_3938757_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY82908.1|3938753_3939401_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY82909.1|3939458_3939986_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82910.1|3940019_3941207_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY82911.1|3941196_3941559_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY82912.1|3941551_3941671_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82913.1|3941671_3941872_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY82914.1|3941868_3942858_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY82915.1|3944344_3946315_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY82916.1|3946556_3946955_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82917.1|3946963_3947887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82918.1|3948344_3949295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82919.1|3949525_3951217_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY82920.1|3951265_3951538_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY82921.1|3951534_3951906_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY82922.1|3952001_3952136_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY82923.1|3952541_3953951_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY82924.1|3953947_3955063_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY82925.1|3955157_3957611_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY82926.1|3957729_3958521_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82927.1|3958640_3960068_+	amidase	NA	NA	NA	NA	NA
AZY83415.1|3960106_3961078_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82928.1|3961496_3962660_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY82929.1|3962747_3963593_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY82930.1|3965149_3966100_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82931.1|3966654_3967029_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY82932.1|3967103_3968162_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY82933.1|3968185_3969136_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82934.1|3972017_3973187_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY83416.1|3973287_3974895_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3974640:3974657	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY82935.1|3974941_3976963_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY82936.1|3976991_3977237_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY82937.1|3977250_3978441_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY82938.1|3978636_3979602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY82939.1|3979624_3980764_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY82940.1|3980975_3981938_+	immunogenic protein	NA	NA	NA	NA	NA
AZY82941.1|3982061_3984086_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY82942.1|3984282_3986526_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AZY82943.1|3986804_3987263_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82944.1|3988190_3990812_-	hypothetical protein	NA	NA	NA	NA	NA
AZY82945.1|3990875_3993503_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY82946.1|3993654_3994719_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY82947.1|3994715_3995489_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY82948.1|3995497_3996331_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY82949.1|3996343_3997123_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY83417.1|3997157_3998630_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY82950.1|3998657_3999416_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY82951.1|3999471_4001322_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY82952.1|4001415_4001892_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY82953.1|4001908_4002829_-	bestrophin	NA	NA	NA	NA	NA
AZY82954.1|4002935_4003436_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZY82955.1|4003809_4004502_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY82956.1|4004810_4005761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY82957.1|4005757_4009531_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZY82958.1|4009867_4011757_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZY82959.1|4011768_4012662_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZY82960.1|4012687_4013563_+	thiazole synthase	NA	NA	NA	NA	NA
AZY82961.1|4013559_4014411_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY82962.1|4014472_4015153_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZY82963.1|4015156_4015516_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82964.1|4015516_4016476_+	hypothetical protein	NA	NA	NA	NA	NA
AZY82965.1|4016496_4016985_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZY83418.1|4017266_4018283_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025530	Bordetella pertussis strain D236 chromosome, complete genome	4285328	4184396	4249308	4285328	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY83130.1|4184396_4184882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83131.1|4185100_4186081_+	protein BugT	NA	NA	NA	NA	NA
AZY83132.1|4186347_4187157_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY83133.1|4187196_4187877_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY83134.1|4187870_4188329_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY83135.1|4188340_4188703_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY83136.1|4188785_4189469_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY83137.1|4189524_4189833_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY83138.1|4189851_4190166_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY83139.1|4190162_4192637_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY83140.1|4192644_4194036_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY83141.1|4194032_4194218_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY83142.1|4194196_4194898_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY83143.1|4194894_4195716_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY83427.1|4195696_4196821_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY83144.1|4196813_4197833_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY83145.1|4198038_4199073_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY83428.1|4199173_4199965_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY83146.1|4200047_4200422_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY83147.1|4200399_4201809_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY83148.1|4201801_4203184_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY83149.1|4203518_4205123_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY83150.1|4205158_4206172_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY83151.1|4206182_4207109_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY83152.1|4207499_4208450_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83153.1|4208619_4209846_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY83154.1|4210045_4210912_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY83155.1|4210904_4211867_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY83156.1|4211967_4212918_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83157.1|4213016_4213967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83158.1|4214065_4215016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83159.1|4215012_4216506_-	RND transporter	NA	NA	NA	NA	NA
AZY83160.1|4216502_4219610_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY83161.1|4219606_4222675_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY83162.1|4222671_4223922_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY83163.1|4224102_4224864_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY83164.1|4224896_4225547_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY83165.1|4225549_4226389_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY83166.1|4226629_4227373_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83167.1|4227455_4227803_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83168.1|4227900_4228743_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY83169.1|4228787_4229675_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY83170.1|4229701_4229890_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY83171.1|4229987_4231445_+	MFS transporter	NA	NA	NA	NA	NA
AZY83172.1|4231431_4232958_+	glycerol kinase	NA	NA	NA	NA	NA
AZY83173.1|4232976_4233444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83174.1|4233443_4234466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83175.1|4234586_4235327_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY83176.1|4235381_4236482_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY83177.1|4236483_4237674_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY83178.1|4237793_4238810_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY83179.1|4239128_4239800_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY83180.1|4239796_4240705_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY83181.1|4240916_4241564_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY83182.1|4245415_4246492_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY83183.1|4246502_4247312_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY83184.1|4247401_4248175_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY83185.1|4248357_4249308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
