assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_004009755.1_ASM400975v1	CP025522	Bordetella avium strain JBBA chromosome, complete genome	1	147995-148100	1	CRISPRCasFinder	no		WYL,csa3,DinG,DEDDh,RT	Orphan	GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,DEDDh,RT	NA,NA	NA|216aa|up_9|CP025522.1_139789_140437_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|420aa|up_8|CP025522.1_140569_141829_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|289aa|up_7|CP025522.1_141980_142847_+	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids	NA|91aa|up_6|CP025522.1_142898_143171_+	PRK02047, PRK02047, hypothetical protein; Provisional	NA|218aa|up_5|CP025522.1_143174_143828_+	PRK14349, PRK14349, lipoyl(octanoyl) transferase LipB	NA|332aa|up_4|CP025522.1_143881_144877_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|188aa|up_3|CP025522.1_144937_145501_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|102aa|up_2|CP025522.1_145623_145929_+	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF	NA|445aa|up_1|CP025522.1_146036_147371_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|180aa|up_0|CP025522.1_147397_147937_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|155aa|down_0|CP025522.1_148218_148683_-	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA	NA|366aa|down_1|CP025522.1_148801_149899_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|164aa|down_2|CP025522.1_150239_150731_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|252aa|down_3|CP025522.1_150912_151668_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|294aa|down_4|CP025522.1_151664_152546_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|309aa|down_5|CP025522.1_152548_153475_+	cd01137, PsaA, Metal binding protein PsaA	NA|222aa|down_6|CP025522.1_153435_154101_+	pfam06226, DUF1007, Protein of unknown function (DUF1007)	NA|306aa|down_7|CP025522.1_154097_155015_+	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|677aa|down_8|CP025522.1_155110_157141_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|326aa|down_9|CP025522.1_157134_158112_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed
GCA_004009755.1_ASM400975v1	CP025522	Bordetella avium strain JBBA chromosome, complete genome	2	2063009-2063230	2	CRISPRCasFinder	no		WYL,csa3,DinG,DEDDh,RT	Orphan	AGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT	54	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,DEDDh,RT	NA,NA	NA|118aa|up_9|CP025522.1_2050860_2051214_-	PRK12671, PRK12671, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|95aa|up_8|CP025522.1_2051210_2051495_-	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|161aa|up_7|CP025522.1_2051491_2051974_-	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|541aa|up_6|CP025522.1_2051975_2053598_-	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|115aa|up_5|CP025522.1_2053594_2053939_-	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|976aa|up_4|CP025522.1_2053940_2056868_-	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|874aa|up_3|CP025522.1_2057254_2059876_-	pfam12128, DUF3584, Protein of unknown function (DUF3584)	NA|372aa|up_2|CP025522.1_2059872_2060988_-	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|434aa|up_1|CP025522.1_2061028_2062330_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|156aa|up_0|CP025522.1_2062468_2062936_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|210aa|down_0|CP025522.1_2063288_2063918_+	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]	NA|377aa|down_1|CP025522.1_2064001_2065132_+	PRK03187, tgl, transglutaminase; Provisional	NA|434aa|down_2|CP025522.1_2065161_2066463_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|261aa|down_3|CP025522.1_2066603_2067386_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|534aa|down_4|CP025522.1_2067414_2069016_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|163aa|down_5|CP025522.1_2069086_2069575_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|256aa|down_6|CP025522.1_2069576_2070344_+	pfam05742, TANGO2, Transport and Golgi organisation 2	NA|147aa|down_7|CP025522.1_2070474_2070915_+	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|130aa|down_8|CP025522.1_2071007_2071397_-	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|274aa|down_9|CP025522.1_2071534_2072356_+	pfam02517, Abi, CAAX protease self-immunity
GCA_004009755.1_ASM400975v1	CP025522	Bordetella avium strain JBBA chromosome, complete genome	3	3560672-3560893	3	CRISPRCasFinder	no		WYL,csa3,DinG,DEDDh,RT	Orphan	CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	54	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,DEDDh,RT	NA,NA	NA|497aa|up_9|CP025522.1_3548873_3550364_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|up_8|CP025522.1_3550374_3551427_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|up_7|CP025522.1_3551463_3552600_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|633aa|up_6|CP025522.1_3552596_3554495_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|187aa|up_5|CP025522.1_3554506_3555067_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|295aa|up_4|CP025522.1_3555047_3555932_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|348aa|up_3|CP025522.1_3556016_3557060_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|103aa|up_2|CP025522.1_3557287_3557596_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|511aa|up_1|CP025522.1_3557599_3559132_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|486aa|up_0|CP025522.1_3559134_3560592_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|221aa|down_0|CP025522.1_3561022_3561685_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|261aa|down_1|CP025522.1_3561783_3562566_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|446aa|down_2|CP025522.1_3563057_3564395_+	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|213aa|down_3|CP025522.1_3564446_3565085_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|285aa|down_4|CP025522.1_3565212_3566067_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|411aa|down_5|CP025522.1_3566068_3567301_-	PRK11902, ampG, muropeptide transporter; Reviewed	NA|204aa|down_6|CP025522.1_3567396_3568008_-	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW	NA|416aa|down_7|CP025522.1_3568004_3569252_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|529aa|down_8|CP025522.1_3569663_3571250_+	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|173aa|down_9|CP025522.1_3571283_3571802_+	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins
