The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	0	122073	4107611	tRNA,protease,transposase	Planktothrix_phage(16.67%)	110	NA	NA
AZY83431.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY83432.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY83433.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY83434.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY83435.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY83436.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY83437.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY83438.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY83439.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY83440.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY83441.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY83442.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY83443.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY83444.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY86843.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY83445.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83446.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY83447.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY83448.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83449.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY83450.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83451.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY83452.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY86844.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83453.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY83454.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY83455.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83456.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY83457.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY83458.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY83459.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY83460.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY83461.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY83462.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY83463.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY83464.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY83465.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83466.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83467.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY83468.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83469.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY83470.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY83471.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83472.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY83473.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY83474.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY83475.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY83476.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY83477.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY83478.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83479.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY83480.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY83481.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86845.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83482.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY83483.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY83484.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY83485.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY83486.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83487.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83488.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY83489.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY83490.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY83491.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY83492.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86846.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83493.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY83494.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86847.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83495.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY83496.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY83497.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY83498.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY83499.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY83500.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY83501.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY83502.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY83503.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY83504.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY83505.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY83506.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY83507.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83508.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY83509.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY83510.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY83511.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY83512.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83513.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY83514.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY83515.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY83516.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY83517.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY83518.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY83519.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY83520.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY83521.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY83522.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83523.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY83524.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY83525.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY83526.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY86848.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY83527.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83528.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY83529.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY83530.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY83531.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY83532.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY83533.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY83534.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	164893	225404	4107611	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY83566.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83567.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83568.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZY83569.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY83570.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY83571.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY83572.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83573.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZY83574.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83575.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZY83576.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZY83577.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY83578.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY83579.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83580.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY83581.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY83582.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY83583.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY83584.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZY83585.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY86853.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY83586.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83587.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY83588.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY83589.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83590.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY83591.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY83592.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY83593.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY83594.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY83595.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83596.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZY83597.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83598.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83599.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY83600.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZY83601.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY83602.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZY83603.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY83604.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY83605.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY86854.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83606.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY83607.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY83608.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY83609.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY83610.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY83611.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY83612.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY83613.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY83614.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	233336	286924	4107611	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
AZY83622.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83623.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83624.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83625.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY83626.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY83627.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83628.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY83629.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83630.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83631.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY83632.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY83633.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY83634.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY83635.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY83636.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY83637.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY83638.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86855.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY83639.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY83640.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY83641.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZY83642.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY83643.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83644.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY83645.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZY83646.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83647.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83648.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83649.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY83650.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY83651.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY83652.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY83653.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY83654.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY83655.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY83656.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83657.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83658.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY83659.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83660.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY83661.1|279655_280267_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY83662.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
AZY83663.1|281299_282682_-	cytochrome b	NA	NA	NA	NA	NA
AZY83664.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY83665.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY83666.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY86856.1|284840_285977_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY83667.1|285973_286924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	390857	448366	4107611	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY83766.1|390857_391808_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83767.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
AZY83768.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY83769.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
AZY83770.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83771.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
AZY83772.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83773.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86862.1|400018_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY83774.1|401157_402141_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83775.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83776.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY83777.1|403584_404826_-	CoA transferase	NA	NA	NA	NA	NA
AZY83778.1|404930_406637_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY83779.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83780.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY83781.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83782.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86863.1|411330_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83783.1|412386_413337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83784.1|413425_414340_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY83785.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
AZY83786.1|415085_416009_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY83787.1|416014_416470_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83788.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY86864.1|417489_417798_+	GtrA family protein	NA	NA	NA	NA	NA
AZY83789.1|417757_419377_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY83790.1|419373_420432_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY83791.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY83792.1|421148_422126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83793.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY83794.1|423523_425035_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY86865.1|425050_426364_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY83795.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83796.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY83797.1|430322_431273_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83798.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY83799.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
AZY83800.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY83801.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY83802.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY83803.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY83804.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
AZY83805.1|439210_439996_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY83806.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY83807.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83808.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY83809.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY83810.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY83811.1|447415_448366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	620982	721446	4107611	tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY83962.1|620982_621933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83963.1|622631_623015_+	hypothetical protein	NA	NA	NA	NA	NA
AZY83964.1|623072_623675_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY86871.1|623692_624094_-	DoxX family protein	NA	NA	NA	NA	NA
AZY83965.1|624227_625121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83966.1|625117_625699_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY83967.1|626493_627228_+	arginyltransferase	NA	NA	NA	NA	NA
AZY83968.1|627268_628318_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY83969.1|628465_629044_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY83970.1|629430_630408_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY83971.1|630501_634896_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY83972.1|635096_635945_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY83973.1|636103_636916_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY83974.1|636971_637922_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83975.1|638020_638821_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83976.1|638882_639266_+	thioredoxin	NA	NA	NA	NA	NA
AZY83977.1|639277_640711_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY83978.1|640917_641247_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY86872.1|641249_641918_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY83979.1|642181_643102_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY83980.1|643148_643361_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY83981.1|643383_643806_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY83982.1|643822_644923_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY83983.1|645019_646537_-	peptidase	NA	NA	NA	NA	NA
AZY83984.1|646612_647452_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY83985.1|647473_648355_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY83986.1|648436_649531_-	porin	NA	NA	NA	NA	NA
AZY83987.1|649824_650775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86873.1|650849_651791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY83988.1|651874_652234_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83989.1|652615_653653_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83990.1|653969_655310_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY83991.1|655319_655772_-	hypothetical protein	NA	NA	NA	NA	NA
AZY83992.1|655868_657050_+	monooxygenase	NA	NA	NA	NA	NA
AZY83993.1|657109_658141_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY83994.1|658181_658421_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY83995.1|658490_660080_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY83996.1|660079_660628_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY83997.1|660708_661281_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY83998.1|661299_662211_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY83999.1|662284_663253_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY84000.1|663375_664449_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY84001.1|664453_666274_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY84002.1|666350_667301_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84003.1|667389_667725_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY84004.1|667858_668509_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY84005.1|668530_669949_-	amidase	NA	NA	NA	NA	NA
AZY84006.1|670018_670774_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86874.1|670742_671501_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY84007.1|671511_672393_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY84008.1|672409_673117_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY84009.1|673119_673878_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY84010.1|674087_675830_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY84011.1|675822_676347_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY84012.1|676386_677181_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY84013.1|677348_678422_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84014.1|678520_679471_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84015.1|679722_679935_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86875.1|680000_680612_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY84016.1|681091_681412_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84017.1|681404_682103_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84018.1|682117_682339_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84019.1|682356_683307_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86876.1|683982_684432_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY84020.1|684418_685696_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY84021.1|685698_687117_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY86877.1|687145_688201_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY84022.1|688206_688449_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY84023.1|688571_689174_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY84024.1|689602_690553_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84025.1|690570_691218_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY84026.1|691227_691479_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84027.1|691541_692024_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY84028.1|692025_692226_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84029.1|692225_692621_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY84030.1|692617_693016_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY84031.1|693012_693435_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84032.1|693442_693943_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY84033.1|694197_694716_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY84034.1|694725_695055_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY84035.1|695072_695363_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY84036.1|695388_698001_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY84037.1|698010_698370_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84038.1|698437_698971_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY84039.1|698967_699357_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY84040.1|699349_703306_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY84041.1|703310_703727_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84042.1|703945_704209_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY84043.1|704208_705021_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84044.1|705025_705268_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84045.1|705246_705798_+	lysozyme	NA	NA	NA	NA	NA
AZY84046.1|705779_706313_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY84047.1|706309_706591_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84048.1|706933_707134_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84049.1|707140_707812_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY84050.1|708167_708854_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY84051.1|708834_709407_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY84052.1|709472_711203_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY84053.1|711255_711684_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY84054.1|711686_712367_+	protein TolQ	NA	NA	NA	NA	NA
AZY84055.1|712366_712825_+	protein TolR	NA	NA	NA	NA	NA
AZY84056.1|712861_713836_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY84057.1|713852_715169_+	protein TolB	NA	NA	NA	NA	NA
AZY84058.1|715200_715698_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY84059.1|715784_716474_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY84060.1|716473_717523_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY84061.1|717519_718314_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY84062.1|718482_718833_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84063.1|718808_719366_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84064.1|720290_720509_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84065.1|720495_721446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	748371	821533	4107611	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY84086.1|748371_749322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84087.1|749976_751074_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY84088.1|751107_752373_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY84089.1|752530_753481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84090.1|753724_754315_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY86879.1|754330_756775_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY84091.1|756894_757866_-	FecR family protein	NA	NA	NA	NA	NA
AZY84092.1|757997_758522_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY84093.1|758481_759432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84094.1|759653_761849_-	DNA methylase	NA	NA	NA	NA	NA
AZY84095.1|761921_762329_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY84096.1|762451_763402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84097.1|763517_763961_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY84098.1|764023_764818_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY84099.1|764983_766120_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY84100.1|766190_767324_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY84101.1|767473_767734_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY84102.1|767767_768079_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY84103.1|768503_769652_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY84104.1|769766_770732_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY84105.1|771000_771867_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84106.1|771997_774046_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY84107.1|774063_776061_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY84108.1|776095_777433_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY84109.1|777695_779549_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84110.1|779603_781085_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY84111.1|781100_781688_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY86880.1|781770_781950_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84112.1|782136_787257_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY84113.1|787334_789473_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY84114.1|789469_790792_+	protein CyaD	NA	NA	NA	NA	NA
AZY84115.1|790793_792218_+	protein CyaE	NA	NA	NA	NA	NA
AZY84116.1|792308_793217_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84117.1|793281_794196_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY84118.1|795033_795717_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY84119.1|795733_796477_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY84120.1|796506_797367_+	aminotransferase	NA	NA	NA	NA	NA
AZY84121.1|797374_797941_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84122.1|798029_798986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84123.1|799030_799783_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84124.1|799779_801525_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY84125.1|801609_802344_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84126.1|802660_803683_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY84127.1|803698_804421_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84128.1|804565_805573_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY84129.1|805613_807146_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY84130.1|807142_808261_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY84131.1|808257_809040_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY84132.1|809051_809915_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY86881.1|809933_811031_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84133.1|811099_812026_-	VOC family protein	NA	NA	NA	NA	NA
AZY84134.1|812060_813755_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY84135.1|813954_814890_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY84136.1|814995_815946_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84137.1|816044_816701_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY84138.1|816848_819557_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY84139.1|819566_820586_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY84140.1|820582_821533_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	854280	903544	4107611	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZY84169.1|854280_855231_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86882.1|855203_855803_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84170.1|855804_856239_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY84171.1|856235_856670_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84172.1|856653_857457_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY84173.1|857473_858289_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY84174.1|858285_859101_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY84175.1|859247_859949_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84176.1|859976_861935_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY84177.1|862017_862968_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84178.1|863188_863857_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY84179.1|863980_865087_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY84180.1|865099_868213_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY84181.1|868209_869703_+	RND transporter	NA	NA	NA	NA	NA
AZY84182.1|869717_870389_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY84183.1|870432_870927_-	azurin	NA	NA	NA	NA	NA
AZY84184.1|871067_871715_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY86883.1|871818_873867_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY84185.1|873863_875876_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY84186.1|875901_877236_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84187.1|877344_878337_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84188.1|878403_880488_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY84189.1|880512_881484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84190.1|881612_882614_-	peptidase M14	NA	NA	NA	NA	NA
AZY84191.1|882647_883889_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY84192.1|883969_884893_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY84193.1|884970_885795_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY84194.1|885991_887008_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY84195.1|887204_888188_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84196.1|889786_891175_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY84197.1|891205_892195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84198.1|892305_893538_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY84199.1|893819_894620_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84200.1|894642_896874_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY84201.1|897661_898108_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY84202.1|898129_898876_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY84203.1|899019_899997_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY84204.1|900630_901242_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY84205.1|901235_902453_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY84206.1|902593_903544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	913156	978096	4107611	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY84215.1|913156_914107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84216.1|914103_915954_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY84217.1|916334_916994_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY84218.1|917081_917234_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84219.1|917342_917510_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84220.1|917521_918202_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY84221.1|918483_919200_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY84222.1|919214_920516_-	phospholipase	NA	NA	NA	NA	NA
AZY84223.1|922660_925549_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZY84224.1|925772_927125_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY84225.1|927153_927675_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY84226.1|927671_929126_+	carboxylase	NA	NA	NA	NA	NA
AZY84227.1|929160_929409_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84228.1|929514_930390_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84229.1|930415_931471_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84230.1|931483_932275_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84231.1|932307_933678_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY84232.1|934854_935805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84233.1|935857_936079_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84234.1|936238_936451_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84235.1|936570_937689_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY84236.1|937785_938001_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84237.1|938194_938446_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84238.1|938558_939509_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84239.1|939505_939889_-	ferredoxin	NA	NA	NA	NA	NA
AZY84240.1|939943_941761_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY86885.1|941907_942735_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY84241.1|942780_943761_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY84242.1|943757_943970_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84243.1|943966_945148_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY84244.1|945311_946046_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY84245.1|946047_948660_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY84246.1|948795_950709_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY84247.1|951324_951735_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY84248.1|951832_952918_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY84249.1|953016_953967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84250.1|953963_954938_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84251.1|955062_955974_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY86886.1|956250_956643_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY84252.1|956772_957723_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84253.1|957752_957935_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY84254.1|957973_958231_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84255.1|958707_959889_-	MFS transporter	NA	NA	NA	NA	NA
AZY84256.1|960104_960782_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY84257.1|960778_961552_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY84258.1|961629_962211_-	OmpA family protein	NA	NA	NA	NA	NA
AZY84259.1|962581_965263_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY84260.1|965262_966396_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY84261.1|966388_967474_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY84262.1|967560_968460_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY84263.1|968456_969785_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY84264.1|969799_970471_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY84265.1|970643_972374_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY84266.1|972375_972735_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY84267.1|972926_973241_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY84268.1|973283_974504_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY84269.1|974500_975442_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY84270.1|975438_976428_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY84271.1|976462_977047_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY84272.1|977145_978096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	997496	1060647	4107611	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY84287.1|997496_998447_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84288.1|998551_999601_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY84289.1|999738_1000755_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY84290.1|1002263_1002836_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY84291.1|1002895_1003627_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY86888.1|1003678_1004596_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84292.1|1005403_1008583_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY84293.1|1008579_1009962_+	multidrug transporter	NA	NA	NA	NA	NA
AZY84294.1|1010031_1010283_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY84295.1|1010428_1011079_-	SCO family protein	NA	NA	NA	NA	NA
AZY84296.1|1011229_1013344_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY84297.1|1013419_1014271_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY84298.1|1014267_1014894_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY84299.1|1014890_1016645_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY84300.1|1016937_1019643_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY84301.1|1019655_1021317_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY84302.1|1021329_1023120_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY84303.1|1023341_1024517_-	flagellin FliC	NA	NA	NA	NA	NA
AZY84304.1|1024559_1025510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84305.1|1025608_1026349_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY84306.1|1026543_1028580_+	transketolase	NA	NA	NA	NA	NA
AZY84307.1|1028597_1029608_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY84308.1|1029725_1030919_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY84309.1|1030948_1031722_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY84310.1|1031718_1032909_-	acetate kinase	NA	NA	NA	NA	NA
AZY84311.1|1032934_1033873_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY86889.1|1033869_1036218_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY84312.1|1036372_1037080_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY84313.1|1037117_1038251_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84314.1|1038527_1039076_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY84315.1|1039094_1039580_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY84316.1|1039757_1040696_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY84317.1|1040698_1041016_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84318.1|1041061_1042006_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84319.1|1043686_1044337_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY84320.1|1044390_1044726_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84321.1|1044722_1045583_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY84322.1|1045599_1045881_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84323.1|1045954_1046218_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY84324.1|1046461_1047412_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84325.1|1047710_1048448_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY84326.1|1048883_1049207_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY84327.1|1049241_1049802_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY84328.1|1049922_1050798_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY84329.1|1050810_1051758_+	motility protein MotB	NA	NA	NA	NA	NA
AZY84330.1|1051859_1052153_+	response regulator	NA	NA	NA	NA	NA
AZY84331.1|1052179_1054237_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY84332.1|1054251_1054752_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY84333.1|1054825_1056532_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY84334.1|1057395_1058448_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY84335.1|1058500_1058890_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY84336.1|1058898_1059531_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY84337.1|1059630_1060647_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1066631	1126694	4107611	tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
AZY84342.1|1066631_1068059_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY84343.1|1068996_1070013_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY84344.1|1070345_1071281_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY84345.1|1071330_1073211_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY84346.1|1073277_1073622_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY84347.1|1073766_1074903_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY84348.1|1074899_1075973_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY84349.1|1076130_1077567_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY86891.1|1077657_1078299_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY84350.1|1078634_1079651_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY84351.1|1081527_1081707_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86892.1|1081693_1082644_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86893.1|1083846_1085268_-	siroheme synthase	NA	NA	NA	NA	NA
AZY84352.1|1085531_1086248_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84353.1|1086332_1086650_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY84354.1|1086690_1087104_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY84355.1|1087105_1087465_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84356.1|1087507_1089052_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY84357.1|1089135_1089966_+	transglycosylase	NA	NA	NA	NA	NA
AZY84358.1|1090000_1091155_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY84359.1|1091197_1092070_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84360.1|1092186_1094475_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY84361.1|1095681_1096146_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY84362.1|1096172_1097123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86894.1|1097490_1098267_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY84363.1|1098311_1099169_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY84364.1|1099190_1100207_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY84365.1|1100341_1101382_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY84366.1|1101576_1103658_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY84367.1|1103893_1105387_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY84368.1|1105617_1106412_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY84369.1|1106632_1107991_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY84370.1|1107987_1108830_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY84371.1|1108848_1110735_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY84372.1|1110972_1111605_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY84373.1|1111623_1112226_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84374.1|1112377_1113328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84375.1|1114130_1114931_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84376.1|1114974_1115961_-	homoserine kinase	NA	NA	NA	NA	NA
AZY84377.1|1116100_1117114_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY84378.1|1117110_1118061_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84379.1|1118173_1118632_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY84380.1|1118668_1119982_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84381.1|1119999_1120371_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY84382.1|1120367_1121831_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY84383.1|1121923_1122700_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY84384.1|1122681_1125561_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY84385.1|1125743_1126694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1157760	1219931	4107611	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
AZY84407.1|1157760_1158711_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY84408.1|1158809_1159442_-	fimbrial protein	NA	NA	NA	NA	NA
AZY84409.1|1159606_1161889_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY84410.1|1162043_1164740_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY84411.1|1164865_1165354_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY84412.1|1167764_1170635_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY84413.1|1170680_1171895_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY84414.1|1172124_1173552_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY84415.1|1173592_1174741_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZY84416.1|1174753_1175512_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84417.1|1175599_1176502_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84418.1|1176498_1177449_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84419.1|1177578_1178562_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84420.1|1178616_1179339_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY84421.1|1180817_1182173_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZY84422.1|1182253_1184629_-	protein tex	NA	NA	NA	NA	NA
AZY84423.1|1184793_1186869_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZY84424.1|1186930_1187731_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZY84425.1|1187832_1188795_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZY84426.1|1188782_1189538_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZY84427.1|1189645_1191283_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZY84428.1|1191350_1192088_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY84429.1|1192190_1192766_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZY84430.1|1192938_1193475_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84431.1|1193477_1193822_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZY84432.1|1193837_1194683_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZY84433.1|1194721_1196101_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZY84434.1|1196178_1197060_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY84435.1|1197158_1198109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84436.1|1198105_1198516_-	VOC family protein	NA	NA	NA	NA	NA
AZY84437.1|1198623_1199478_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZY84438.1|1199470_1200433_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84439.1|1200478_1201603_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZY86896.1|1201714_1202587_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84440.1|1202711_1203491_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY84441.1|1203644_1205066_+	MFS transporter	NA	NA	NA	NA	NA
AZY84442.1|1205500_1207198_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZY84443.1|1207226_1207349_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86897.1|1207424_1208366_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZY84444.1|1208692_1209439_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84445.1|1209446_1210373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84446.1|1210494_1211412_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84447.1|1211451_1212405_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84448.1|1212429_1213008_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZY84449.1|1214681_1215290_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84450.1|1215367_1215721_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84451.1|1215804_1216794_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY84452.1|1216996_1217947_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84453.1|1218033_1218984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84454.1|1218980_1219931_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1270859	1328070	4107611	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY84492.1|1270859_1271810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84493.1|1275556_1276168_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY84494.1|1276390_1277851_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY84495.1|1277947_1279540_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY84496.1|1279526_1279805_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84497.1|1279863_1280151_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY84498.1|1280152_1281493_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY84499.1|1281588_1282278_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84500.1|1282290_1283721_+	MFS transporter	NA	NA	NA	NA	NA
AZY84501.1|1285445_1286267_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84502.1|1286277_1287849_+	amidohydrolase	NA	NA	NA	NA	NA
AZY84503.1|1287877_1288855_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY84504.1|1288881_1289685_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY84505.1|1289681_1290476_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY84506.1|1290483_1291719_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY84507.1|1291711_1292146_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY84508.1|1292895_1293846_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84509.1|1294467_1296195_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY84510.1|1296306_1297665_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY84511.1|1297785_1297971_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84512.1|1297957_1298908_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84513.1|1298948_1300019_+	FUSC family protein	NA	NA	NA	NA	NA
AZY86899.1|1300041_1300920_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY84514.1|1301091_1302063_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY84515.1|1302225_1303068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84516.1|1303229_1303910_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY84517.1|1303903_1305073_+	amine oxidase	NA	NA	NA	NA	NA
AZY84518.1|1305069_1306101_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY84519.1|1306144_1307386_+	MFS transporter	NA	NA	NA	NA	NA
AZY84520.1|1307420_1308953_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY84521.1|1309033_1309657_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY84522.1|1309687_1310299_+	LysE family translocator	NA	NA	NA	NA	NA
AZY84523.1|1310334_1310805_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY84524.1|1311236_1312241_+	peptidase M20	NA	NA	NA	NA	NA
AZY84525.1|1312277_1313792_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY84526.1|1313795_1314755_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY84527.1|1314783_1315587_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY84528.1|1315588_1317223_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY84529.1|1317306_1318368_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY84530.1|1318566_1318836_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84531.1|1318839_1319364_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY84532.1|1319779_1320730_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84533.1|1320726_1321797_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY84534.1|1321869_1322508_+	DedA family protein	NA	NA	NA	NA	NA
AZY84535.1|1322802_1323030_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY84536.1|1323152_1323866_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY84537.1|1324110_1325061_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84538.1|1325164_1325446_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84539.1|1325560_1327009_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY84540.1|1327119_1328070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1418303	1470456	4107611	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
AZY84622.1|1418303_1419254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84623.1|1419420_1419774_+	cytochrome C	NA	NA	NA	NA	NA
AZY84624.1|1419786_1420149_+	cytochrome	NA	NA	NA	NA	NA
AZY84625.1|1420190_1420616_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY84626.1|1420818_1422075_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY84627.1|1422273_1423254_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84628.1|1423403_1424645_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AZY84629.1|1424743_1425694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84630.1|1425702_1426398_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY84631.1|1429219_1429819_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY84632.1|1429829_1431995_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY84633.1|1432018_1433803_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY84634.1|1433802_1433892_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY84635.1|1434586_1434859_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY84636.1|1434858_1436925_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY84637.1|1436921_1437872_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84638.1|1437970_1438921_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84639.1|1439036_1439369_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY84640.1|1439365_1440052_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY84641.1|1440038_1440998_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY86907.1|1441039_1443400_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY84642.1|1443399_1444032_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY84643.1|1444094_1445474_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY84644.1|1445520_1446876_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY84645.1|1447154_1447403_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84646.1|1447590_1447908_-	virulence factor	NA	NA	NA	NA	NA
AZY84647.1|1448180_1448696_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY84648.1|1448789_1448951_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84649.1|1448966_1449722_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY84650.1|1450060_1450267_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84651.1|1450274_1450934_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY84652.1|1451228_1453433_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY84653.1|1453543_1454767_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY84654.1|1454889_1455864_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY84655.1|1455931_1457125_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY84656.1|1457139_1457940_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY84657.1|1457936_1459793_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY84658.1|1459789_1460395_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY84659.1|1460413_1461799_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY84660.1|1462524_1463751_+	transporter	NA	NA	NA	NA	NA
AZY84661.1|1463839_1464622_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY84662.1|1464720_1465671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84663.1|1465697_1466471_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY84664.1|1466482_1467724_+	MFS transporter	NA	NA	NA	NA	NA
AZY84665.1|1469505_1470456_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1514381	1573243	4107611	tRNA,protease,transposase	Streptococcus_virus(11.11%)	53	NA	NA
AZY86908.1|1514381_1514870_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY84713.1|1514987_1515566_+|protease	protease	protease	NA	NA	NA	NA
AZY84714.1|1515638_1516040_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY84715.1|1516138_1517089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84716.1|1517095_1518208_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY84717.1|1518894_1520097_+	MFS transporter	NA	NA	NA	NA	NA
AZY84718.1|1520300_1522961_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84719.1|1522973_1526378_+	nuclease	NA	NA	NA	NA	NA
AZY84720.1|1527045_1529271_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY84721.1|1529317_1529644_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY84722.1|1529694_1530303_+	recombination protein RecR	NA	NA	NA	NA	NA
AZY84723.1|1530401_1531352_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84724.1|1531421_1532186_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY84725.1|1532182_1532782_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86909.1|1532885_1533731_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY84726.1|1533796_1534423_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY84727.1|1534419_1535370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84728.1|1535356_1535545_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84729.1|1535468_1536590_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY84730.1|1536570_1537572_-	aminopeptidase	NA	NA	NA	NA	NA
AZY84731.1|1537677_1539189_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY84732.1|1539185_1540490_-	peptidase	NA	NA	NA	NA	NA
AZY84733.1|1540601_1541162_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY84734.1|1541429_1541984_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY84735.1|1542439_1542655_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY86910.1|1542909_1545507_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY84736.1|1545503_1546691_+	cupin	NA	NA	NA	NA	NA
AZY84737.1|1547348_1547963_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZY84738.1|1548051_1549179_-	lipoprotein	NA	NA	NA	NA	NA
AZY84739.1|1549190_1550096_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY84740.1|1550988_1551939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84741.1|1552120_1552873_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY84742.1|1552941_1553601_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY84743.1|1553597_1554326_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY84744.1|1554338_1556618_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY84745.1|1556642_1556846_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY84746.1|1556887_1557535_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY84747.1|1557655_1558573_-	cytochrome C	NA	NA	NA	NA	NA
AZY84748.1|1558569_1559283_-	cytochrome C	NA	NA	NA	NA	NA
AZY84749.1|1559520_1560291_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84750.1|1560295_1560895_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY84751.1|1561139_1562630_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZY84752.1|1562688_1562973_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY84753.1|1562969_1563098_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84754.1|1563110_1563266_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84755.1|1563538_1564465_-	YicC family protein	NA	NA	NA	NA	NA
AZY84756.1|1564601_1565342_+	ribonuclease PH	NA	NA	NA	NA	NA
AZY84757.1|1565508_1566885_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY84758.1|1567066_1567972_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY84759.1|1568006_1569746_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY84760.1|1569623_1571426_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY84761.1|1571543_1572194_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY84762.1|1572292_1573243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1618415	1674006	4107611	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZY84793.1|1618415_1619366_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84794.1|1619424_1620198_+	oxidoreductase	NA	NA	NA	NA	NA
AZY84795.1|1620190_1621747_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY84796.1|1621743_1622694_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84797.1|1624020_1624623_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84798.1|1624862_1625564_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY84799.1|1625557_1626340_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY84800.1|1626524_1627475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84801.1|1627573_1628311_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY84802.1|1628500_1629259_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84803.1|1629305_1630295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84804.1|1630472_1631441_-	transporter	NA	NA	NA	NA	NA
AZY84805.1|1632980_1633949_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY84806.1|1633957_1634899_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY84807.1|1635372_1636383_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86914.1|1636373_1637888_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY84808.1|1637884_1639231_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86915.1|1639233_1640268_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY84809.1|1640317_1641943_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY84810.1|1642495_1643446_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84811.1|1643550_1644498_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86916.1|1644551_1646366_-	histidine kinase	NA	NA	NA	NA	NA
AZY84812.1|1646358_1647033_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY84813.1|1647162_1650237_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZY84814.1|1650250_1650550_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY86917.1|1650864_1651488_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY84815.1|1651731_1652601_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZY84816.1|1652578_1653523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86918.1|1653608_1654580_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY86919.1|1654647_1655421_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84817.1|1655417_1656614_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY84818.1|1656644_1657595_-	hydrolase	NA	NA	NA	NA	NA
AZY84819.1|1657816_1658506_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY84820.1|1658570_1659326_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84821.1|1659377_1660370_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84822.1|1660379_1661333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84823.1|1661448_1662411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84824.1|1663812_1664241_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84825.1|1664237_1665188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86920.1|1665481_1666204_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY84826.1|1666642_1667830_-	MFS transporter	NA	NA	NA	NA	NA
AZY84827.1|1667833_1668214_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84828.1|1669933_1670905_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY84829.1|1670918_1671632_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY84830.1|1671636_1672554_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84831.1|1672660_1672957_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84832.1|1673055_1674006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1831773	1891043	4107611	tRNA,protease,transposase	Klosneuvirus(40.0%)	49	NA	NA
AZY84952.1|1831773_1832724_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84953.1|1832848_1833658_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY84954.1|1833858_1834809_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84955.1|1836082_1837300_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY84956.1|1838356_1839259_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84957.1|1839335_1840208_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY84958.1|1840338_1840707_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY84959.1|1840764_1841811_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY84960.1|1842006_1843263_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY84961.1|1843267_1844605_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY84962.1|1844754_1845711_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY84963.1|1847183_1847534_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84964.1|1847581_1849156_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY84965.1|1849208_1850153_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY84966.1|1850170_1851001_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY84967.1|1850993_1852628_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY84968.1|1852624_1853980_+	amidase	NA	NA	NA	NA	NA
AZY84969.1|1854886_1856464_+	lipoprotein	NA	NA	NA	NA	NA
AZY84970.1|1856467_1857742_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86926.1|1857839_1858214_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84971.1|1859929_1861063_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZY84972.1|1861100_1861706_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY84973.1|1861702_1862521_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84974.1|1862592_1865217_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY84975.1|1865203_1865458_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY84976.1|1865524_1866106_-	hypothetical protein	NA	NA	NA	NA	NA
AZY84977.1|1866409_1866670_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY84978.1|1866835_1867459_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY84979.1|1867458_1868232_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY84980.1|1868228_1869437_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY84981.1|1869462_1869936_-	RidA family protein	NA	NA	NA	NA	NA
AZY84982.1|1870009_1870960_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84983.1|1871058_1872009_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY84984.1|1872107_1873457_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY84985.1|1874222_1874978_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY84986.1|1875070_1877953_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY84987.1|1878275_1878701_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY84988.1|1878728_1879877_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY84989.1|1879873_1880380_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY84990.1|1880386_1881682_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY84991.1|1881722_1883027_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY84992.1|1883028_1883667_+	hypothetical protein	NA	NA	NA	NA	NA
AZY84993.1|1883669_1884830_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY84994.1|1884856_1886212_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY84995.1|1886215_1887286_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY84996.1|1887424_1887661_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY84997.1|1887748_1888855_+	GTPase HflX	NA	NA	NA	NA	NA
AZY84998.1|1888820_1890125_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY84999.1|1890143_1891043_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1901283	1958780	4107611	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
AZY85007.1|1901283_1902234_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85008.1|1902332_1903283_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85009.1|1903269_1903470_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85010.1|1903482_1904568_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY85011.1|1904583_1905345_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY85012.1|1905341_1906265_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY85013.1|1906363_1906888_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY85014.1|1906896_1907640_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY85015.1|1907735_1907975_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85016.1|1907988_1908141_-	lipoprotein	NA	NA	NA	NA	NA
AZY85017.1|1908226_1909717_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY85018.1|1909808_1910747_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY85019.1|1910743_1910920_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY85020.1|1910922_1911585_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY86928.1|1913206_1913350_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY85021.1|1913346_1914321_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85022.1|1914487_1915438_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85023.1|1915434_1916709_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY85024.1|1916806_1918006_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY85025.1|1918002_1918656_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY85026.1|1918652_1920089_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY85027.1|1920076_1920436_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY85028.1|1922355_1924221_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY86929.1|1924478_1925999_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY85029.1|1926086_1926737_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY85030.1|1927685_1928981_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY85031.1|1929002_1929887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86930.1|1929985_1930861_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY85032.1|1930850_1931207_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY85033.1|1931280_1932312_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY85034.1|1932441_1932621_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY85035.1|1932718_1933243_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY85036.1|1933253_1934090_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY85037.1|1934202_1934574_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY85038.1|1934570_1935122_+	ATPase	NA	NA	NA	NA	NA
AZY85039.1|1935137_1936829_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY85040.1|1936877_1937558_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85041.1|1937805_1938270_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85042.1|1938439_1939369_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY85043.1|1939381_1940029_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85044.1|1940102_1941920_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY85045.1|1942003_1942954_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85046.1|1943606_1944557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85047.1|1944575_1944923_-	GFA family protein	NA	NA	NA	NA	NA
AZY85048.1|1944951_1946391_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY85049.1|1946409_1946805_-	VOC family protein	NA	NA	NA	NA	NA
AZY85050.1|1946979_1947588_+	peptidase S16	NA	NA	NA	NA	NA
AZY85051.1|1947600_1948419_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY85052.1|1948370_1949345_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY85053.1|1949373_1950435_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85054.1|1950431_1952648_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY85055.1|1952661_1953120_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY85056.1|1953277_1953622_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85057.1|1953778_1954684_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86931.1|1954770_1955784_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY85058.1|1957763_1958780_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	1974330	2038699	4107611	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZY85075.1|1974330_1975281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85076.1|1975267_1975459_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85077.1|1975502_1976453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85078.1|1976551_1977517_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY85079.1|1977654_1978554_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85080.1|1981148_1982636_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85081.1|1982646_1983843_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY85082.1|1983915_1985235_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY85083.1|1985231_1986107_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY85084.1|1986137_1987307_-	CoA transferase	NA	NA	NA	NA	NA
AZY85085.1|1987303_1987618_-	ferredoxin	NA	NA	NA	NA	NA
AZY85086.1|1987639_1988362_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY85087.1|1988361_1989180_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY85088.1|1989184_1989712_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY85089.1|1989717_1990983_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY85090.1|1991332_1992472_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85091.1|1992549_1993422_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY85092.1|1994292_1995243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85093.1|1995202_1995838_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85094.1|1996197_1997520_-	isocitrate lyase	NA	NA	NA	NA	NA
AZY85095.1|1997748_1998660_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY85096.1|2000084_2000657_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY85097.1|2000696_2002526_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZY85098.1|2002488_2003547_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY85099.1|2003584_2004046_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZY85100.1|2004130_2004877_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY85101.1|2006367_2009598_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY85102.1|2009664_2010996_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY85103.1|2011248_2011623_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY85104.1|2011725_2012904_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85105.1|2012914_2013505_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY86933.1|2013615_2014422_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY85106.1|2014447_2015242_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY85107.1|2016242_2017217_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85108.1|2017375_2017888_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY85109.1|2018044_2019016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY85110.1|2020760_2021567_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY86934.1|2021563_2022700_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY85111.1|2022815_2023580_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85112.1|2023693_2024464_-	spermidine synthase	NA	NA	NA	NA	NA
AZY85113.1|2024548_2025760_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY85114.1|2025808_2026183_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY85115.1|2026283_2027546_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY85116.1|2027542_2028400_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY85117.1|2028572_2029574_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85118.1|2030025_2030976_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85119.1|2032491_2033691_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY85120.1|2034059_2034296_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY85121.1|2034359_2034527_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY85122.1|2034640_2036536_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY85123.1|2036699_2037650_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85124.1|2037748_2038699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2131854	2195944	4107611	tRNA,protease,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
AZY85198.1|2131854_2133123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85199.1|2133693_2133906_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85200.1|2133923_2134655_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85201.1|2134689_2135331_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY85202.1|2135323_2136040_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY85203.1|2138204_2138981_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY85204.1|2139002_2140160_-	thiolase	NA	NA	NA	NA	NA
AZY85205.1|2140156_2140588_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85206.1|2140584_2141388_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY85207.1|2141401_2141857_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY85208.1|2141869_2142841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY85209.1|2142906_2144130_-	CoA transferase	NA	NA	NA	NA	NA
AZY85210.1|2144357_2145308_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85211.1|2145431_2147885_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY85212.1|2148073_2149378_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY85213.1|2149482_2150136_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY85214.1|2150138_2151449_-	trigger factor	NA	NA	NA	NA	NA
AZY85215.1|2151627_2152206_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY85216.1|2152317_2152518_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY85217.1|2152863_2153430_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY85218.1|2153513_2153717_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY85219.1|2154023_2154344_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85220.1|2154385_2154667_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85221.1|2154741_2155998_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY85222.1|2156380_2156710_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY85223.1|2158280_2159102_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY85224.1|2159101_2160241_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY85225.1|2160247_2161144_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY85226.1|2161140_2163066_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY85227.1|2163425_2166038_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY85228.1|2166090_2168391_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY85229.1|2168387_2169596_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY85230.1|2169857_2170232_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85231.1|2170228_2171179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85232.1|2171277_2173272_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY85233.1|2173331_2174297_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY85234.1|2174286_2177148_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY85235.1|2177150_2177657_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY85236.1|2177761_2178970_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY85237.1|2178971_2179910_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85238.1|2180071_2180545_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY85239.1|2180541_2181492_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85240.1|2181478_2181658_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85241.1|2181602_2182043_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY85242.1|2182171_2183401_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY85243.1|2183439_2184261_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY85244.1|2184314_2185466_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY85245.1|2185557_2186046_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY85246.1|2188572_2191146_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY85247.1|2191216_2193790_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY85248.1|2194055_2194256_+	CsbD family protein	NA	NA	NA	NA	NA
AZY85249.1|2194287_2194449_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY85250.1|2194506_2194845_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY85251.1|2194993_2195944_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2211914	2269669	4107611	tRNA,transposase	Moraxella_phage(40.0%)	58	NA	NA
AZY85266.1|2211914_2212931_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY85267.1|2213028_2214069_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY85268.1|2214203_2215496_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY85269.1|2216855_2217239_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY85270.1|2217256_2217844_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY85271.1|2217881_2218832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85272.1|2218930_2219881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85273.1|2219979_2220540_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY85274.1|2220536_2221082_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85275.1|2221277_2222306_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85276.1|2222346_2223687_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY85277.1|2223795_2224800_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85278.1|2224906_2227507_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY85279.1|2227605_2228556_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85280.1|2228654_2229605_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85281.1|2229601_2229874_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86941.1|2230132_2232844_-	autotransporter BapA	NA	NA	NA	NA	NA
AZY85282.1|2233411_2234956_+	cardiolipin synthase	NA	NA	NA	NA	NA
AZY85283.1|2234952_2235303_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AZY85284.1|2235446_2235875_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
AZY85285.1|2235958_2237122_+	alanine racemase	NA	NA	NA	NA	NA
AZY85286.1|2237118_2239560_-	MFS transporter	NA	NA	NA	NA	NA
AZY85287.1|2239644_2241666_+	regulator	NA	NA	NA	NA	NA
AZY85288.1|2241662_2242850_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85289.1|2244176_2244377_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86942.1|2244413_2245112_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85290.1|2245286_2245889_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZY85291.1|2245909_2247712_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AZY85292.1|2247702_2248101_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85293.1|2248097_2249147_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AZY85294.1|2249143_2249944_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY85295.1|2249955_2250231_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY85296.1|2250227_2250899_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY86943.1|2250895_2251975_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZY85297.1|2251971_2252520_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85298.1|2252516_2253026_-	type III secretion protein	NA	NA	NA	NA	NA
AZY85299.1|2253025_2254360_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AZY85300.1|2254364_2255003_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZY85301.1|2254972_2255635_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85302.1|2255627_2256452_-	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AZY85303.1|2256448_2256856_-	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA	NA
AZY85304.1|2256852_2257374_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85305.1|2257378_2257840_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZY85306.1|2257863_2259066_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85307.1|2259095_2260037_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85308.1|2260084_2260570_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZY85309.1|2260585_2260861_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85310.1|2260882_2261500_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85311.1|2261663_2262761_+	TyeA family type III secretion system gatekeeper subunit	NA	NA	NA	NA	NA
AZY85312.1|2262757_2263135_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
AZY85313.1|2263139_2263550_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85314.1|2263546_2263915_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86944.1|2263911_2266011_+	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY85315.1|2266007_2267288_+	EscD/YscD/HrpQ family type III secretion system inner membrane ring protein	NA	NA	NA	NA	NA
AZY85316.1|2267328_2267628_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85317.1|2267617_2267884_+	type III secretion protein	NA	NA	NA	NA	NA
AZY85318.1|2267919_2268375_-	Tir chaperone family protein	NA	NA	NA	NA	NA
AZY85319.1|2268718_2269669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2477237	2535481	4107611	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
AZY85488.1|2477237_2478188_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85489.1|2478667_2479324_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY85490.1|2479338_2481006_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY85491.1|2481008_2481638_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85492.1|2481849_2482944_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85493.1|2483088_2483901_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY85494.1|2483904_2485608_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY85495.1|2485658_2486789_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY85496.1|2486975_2488052_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY86951.1|2488133_2488784_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY85497.1|2488798_2490232_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY85498.1|2490485_2491304_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85499.1|2491300_2492005_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY85500.1|2492904_2494020_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85501.1|2494053_2494428_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85502.1|2494450_2495608_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY85503.1|2495620_2495854_-	lipoprotein	NA	NA	NA	NA	NA
AZY85504.1|2496488_2499458_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY85505.1|2499472_2499682_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY85506.1|2499833_2500463_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85507.1|2500459_2502577_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY85508.1|2502573_2503254_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY85509.1|2503250_2503811_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY85510.1|2503817_2504915_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY85511.1|2505052_2505661_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY85512.1|2505657_2506950_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY85513.1|2506963_2507506_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY85514.1|2507515_2508352_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY85515.1|2508385_2509447_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY85516.1|2509488_2510541_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY85517.1|2510556_2510859_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85518.1|2511000_2511951_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85519.1|2512129_2513824_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY85520.1|2513820_2514906_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY85521.1|2514953_2515853_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85522.1|2515863_2516508_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY85523.1|2517529_2520772_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY85524.1|2520782_2521880_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY85525.1|2522142_2523126_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY85526.1|2523224_2524175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85527.1|2524273_2525224_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85528.1|2525233_2525923_-	VIT family protein	NA	NA	NA	NA	NA
AZY85529.1|2525982_2526420_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY85530.1|2526465_2527359_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY85531.1|2527406_2528579_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY85532.1|2528575_2529730_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY85533.1|2529926_2530277_-	RnfH family protein	NA	NA	NA	NA	NA
AZY85534.1|2530266_2530701_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY85535.1|2530717_2531668_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85536.1|2531815_2532283_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY85537.1|2532263_2533421_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY85538.1|2533486_2534413_-	paraslipin	NA	NA	NA	NA	NA
AZY85539.1|2534530_2535481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2577759	2644259	4107611	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY85578.1|2577759_2578710_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85579.1|2579079_2579652_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY85580.1|2579654_2580665_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY85581.1|2580657_2581158_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY85582.1|2581168_2581510_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY85583.1|2581521_2582313_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY85584.1|2582329_2582599_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY85585.1|2582621_2583410_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY85586.1|2583456_2584473_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY85587.1|2584689_2586132_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY85588.1|2586310_2587930_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY85589.1|2588050_2589871_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY85590.1|2589949_2591482_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY85591.1|2591515_2593162_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY85592.1|2593231_2594254_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY85593.1|2594271_2595405_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY85594.1|2595407_2596097_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY85595.1|2596096_2596882_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY85596.1|2596925_2597690_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY85597.1|2597728_2599150_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY85598.1|2599215_2599920_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY85599.1|2599967_2600387_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY85600.1|2600399_2600807_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY86955.1|2600990_2601701_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY85601.1|2601827_2602118_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY85602.1|2602135_2602618_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY85603.1|2607123_2608278_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY85604.1|2608583_2609600_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY85605.1|2609846_2610635_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85606.1|2610701_2611382_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY85607.1|2611378_2612149_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY85608.1|2612247_2613198_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85609.1|2613253_2614171_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY85610.1|2614181_2615360_-	mandelate racemase	NA	NA	NA	NA	NA
AZY85611.1|2615379_2616375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY85612.1|2617963_2618572_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY85613.1|2618559_2619600_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY85614.1|2619617_2620580_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY85615.1|2620576_2621770_-	CoA transferase	NA	NA	NA	NA	NA
AZY85616.1|2621766_2622564_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY85617.1|2622589_2623576_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY85618.1|2623594_2625634_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY86956.1|2625835_2626516_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85619.1|2626529_2627441_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY85620.1|2627437_2628016_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY85621.1|2628154_2629060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85622.1|2629067_2632487_+	nuclease	NA	NA	NA	NA	NA
AZY85623.1|2632474_2635075_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY85624.1|2636030_2636663_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85625.1|2637056_2637815_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85626.1|2637811_2639014_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY85627.1|2639201_2640152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85628.1|2641059_2642205_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY86957.1|2642224_2642947_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY85629.1|2643063_2643243_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85630.1|2643308_2644259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2672374	2709786	4107611	transposase	Planktothrix_phage(33.33%)	39	NA	NA
AZY85645.1|2672374_2673325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85646.1|2673423_2674374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85647.1|2674466_2675006_+	peroxiredoxin	NA	NA	NA	NA	NA
AZY85648.1|2675112_2675457_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY85649.1|2675514_2676963_-	CoA transferase	NA	NA	NA	NA	NA
AZY85650.1|2677150_2677486_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY85651.1|2679113_2680292_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY85652.1|2680374_2680875_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY85653.1|2680900_2681686_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY85654.1|2681697_2682162_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY85655.1|2682158_2682452_+	biotin--protein ligase	NA	NA	NA	NA	NA
AZY85656.1|2682448_2683225_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY85657.1|2683253_2684081_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY85658.1|2684206_2684677_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85659.1|2684803_2685697_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY85660.1|2685744_2686926_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY85661.1|2686938_2687754_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85662.1|2687887_2688415_-	RES domain-containing protein	NA	NA	NA	NA	NA
AZY86960.1|2688411_2688909_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY85663.1|2689056_2689434_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY85664.1|2689655_2690606_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86961.1|2690704_2691316_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY85665.1|2691550_2692678_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85666.1|2692788_2693877_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY85667.1|2693929_2694781_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY85668.1|2694800_2695682_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY86962.1|2695858_2697172_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY85669.1|2697382_2698216_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY85670.1|2698212_2698794_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY85671.1|2699147_2700098_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85672.1|2700113_2701229_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85673.1|2701331_2702258_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY85674.1|2702257_2703496_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY85675.1|2703492_2704260_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY85676.1|2704260_2704962_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY86963.1|2705043_2705490_-	glutamate racemase	NA	NA	NA	NA	NA
AZY85677.1|2706379_2707018_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY85678.1|2707786_2708737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85679.1|2708835_2709786_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2808913	2863430	4107611	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AZY85763.1|2808913_2809864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85764.1|2809850_2810045_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85765.1|2810192_2810798_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY85766.1|2810851_2812165_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY85767.1|2812239_2812710_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY85768.1|2812709_2813498_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY85769.1|2813508_2815161_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY85770.1|2815248_2816199_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86969.1|2817360_2817867_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY85771.1|2817863_2818628_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY85772.1|2818643_2818928_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY85773.1|2818992_2819982_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY85774.1|2820153_2821083_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY85775.1|2821054_2821741_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY85776.1|2821774_2822320_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY85777.1|2822364_2823630_+	peptidase M48	NA	NA	NA	NA	NA
AZY85778.1|2823626_2824529_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY85779.1|2825710_2826655_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY85780.1|2826749_2828267_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85781.1|2828308_2829937_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY85782.1|2830044_2830926_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85783.1|2834038_2834413_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY85784.1|2834437_2834776_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY85785.1|2834819_2836454_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY85786.1|2836492_2837839_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY86970.1|2837946_2839368_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY85787.1|2839437_2840022_-	nitroreductase	NA	NA	NA	NA	NA
AZY85788.1|2840124_2841075_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85789.1|2841209_2842316_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85790.1|2842326_2843424_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY85791.1|2843568_2844774_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY85792.1|2844780_2845302_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY85793.1|2845298_2845790_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY85794.1|2845786_2846038_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY85795.1|2846018_2846504_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY85796.1|2846639_2850101_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85797.1|2850097_2851003_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY85798.1|2851012_2851444_-	lipoprotein	NA	NA	NA	NA	NA
AZY86971.1|2851690_2852194_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY85799.1|2852205_2853672_+	MFS transporter	NA	NA	NA	NA	NA
AZY85800.1|2853746_2854622_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86972.1|2854618_2855626_-	biotin synthase	NA	NA	NA	NA	NA
AZY85801.1|2856093_2856399_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY85802.1|2856489_2857080_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85803.1|2857270_2858287_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY85804.1|2858478_2860815_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY85805.1|2860897_2861332_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY85806.1|2861430_2862381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85807.1|2862479_2863430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2871455	2928240	4107611	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
AZY85815.1|2871455_2872406_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85816.1|2874112_2874418_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85817.1|2875086_2875425_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY85818.1|2879977_2880580_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85819.1|2880676_2881966_+	MFS transporter	NA	NA	NA	NA	NA
AZY85820.1|2882023_2882755_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY85821.1|2882751_2883555_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY85822.1|2883551_2884640_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY85823.1|2884636_2885566_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY85824.1|2885714_2886860_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85825.1|2886881_2887832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85826.1|2888162_2891984_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY85827.1|2892140_2892809_-	lipoprotein	NA	NA	NA	NA	NA
AZY85828.1|2892813_2894487_-	MCE family protein	NA	NA	NA	NA	NA
AZY85829.1|2894505_2895825_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY85830.1|2895829_2898181_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY86973.1|2898200_2900369_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY85831.1|2900365_2905555_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY85832.1|2905644_2905959_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY85833.1|2906186_2906432_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY85834.1|2906526_2907045_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY85835.1|2907144_2908350_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY85836.1|2908465_2909863_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY85837.1|2909979_2910558_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY85838.1|2910630_2912022_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY85839.1|2912189_2913140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85840.1|2913420_2914041_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY85841.1|2914037_2914451_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY85842.1|2914447_2915491_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY85843.1|2915546_2915735_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85844.1|2915744_2916509_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY85845.1|2916599_2917256_+	adenylate kinase	NA	NA	NA	NA	NA
AZY85846.1|2917347_2918106_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY85847.1|2918131_2919733_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY85848.1|2919933_2920938_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY85849.1|2921038_2921302_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY85850.1|2921419_2922196_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY85851.1|2922786_2923737_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85852.1|2926120_2927233_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY85853.1|2927289_2928240_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	2958626	3002317	4107611	transposase	Planktothrix_phage(33.33%)	42	NA	NA
AZY85882.1|2958626_2959577_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85883.1|2959563_2959809_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85884.1|2959697_2960594_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY85885.1|2962871_2965097_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY85886.1|2965261_2966350_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY85887.1|2966306_2966960_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY85888.1|2967007_2967805_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85889.1|2968336_2969287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85890.1|2969367_2970516_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY85891.1|2970572_2971523_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85892.1|2971509_2971728_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85893.1|2971621_2971927_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY85894.1|2971955_2972390_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY85895.1|2972391_2973636_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY85896.1|2973632_2974343_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86975.1|2974357_2975269_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY85897.1|2975631_2976036_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85898.1|2976032_2976491_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85899.1|2976497_2977406_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86976.1|2977402_2978269_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY85900.1|2978255_2979083_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY85901.1|2979093_2980221_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY85902.1|2981298_2982537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85903.1|2982578_2983841_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY85904.1|2983847_2984600_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY85905.1|2984651_2984837_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85906.1|2985112_2985577_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY85907.1|2985608_2986268_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY85908.1|2986412_2988521_+	AsmA family protein	NA	NA	NA	NA	NA
AZY85909.1|2988517_2989468_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85910.1|2989571_2990192_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86977.1|2990295_2991036_+	oxidoreductase	NA	NA	NA	NA	NA
AZY85911.1|2992170_2993295_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85912.1|2993340_2993709_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85913.1|2993950_2994901_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85914.1|2995936_2996479_-	hypothetical protein	NA	NA	NA	NA	NA
AZY85915.1|2996683_2996878_+	hypothetical protein	NA	NA	NA	NA	NA
AZY85916.1|2996864_2997815_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY85917.1|2997811_2998777_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY85918.1|2998846_2999683_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY85919.1|3000159_3001305_+	porin	NA	NA	NA	NA	NA
AZY85920.1|3001366_3002317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	3235829	3270667	4107611	holin,transposase	Erwinia_phage(20.0%)	36	NA	NA
AZY86103.1|3235829_3236780_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86104.1|3237224_3237536_-	cell division protein ZapA	NA	NA	NA	NA	NA
AZY86105.1|3237535_3238066_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86106.1|3238228_3239179_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86107.1|3239468_3239933_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY86108.1|3239947_3241453_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY86109.1|3241706_3243314_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY86110.1|3243369_3244275_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY86111.1|3244715_3245666_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86112.1|3245764_3246715_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86113.1|3246796_3247378_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY86995.1|3247802_3248108_+	RND transporter	NA	NA	NA	NA	NA
AZY86114.1|3248121_3249456_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY86115.1|3249477_3250017_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY86116.1|3250164_3250629_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY86117.1|3250771_3251887_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY86118.1|3252163_3252667_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY86119.1|3252804_3253005_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86120.1|3252995_3253718_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY86121.1|3253714_3254611_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY86122.1|3254607_3255543_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY86996.1|3255548_3256172_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY86123.1|3256162_3257131_+	nickel transporter	NA	NA	NA	NA	NA
AZY86124.1|3257179_3259321_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY86125.1|3259333_3260314_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY86126.1|3260328_3261021_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY86127.1|3261047_3261959_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY86128.1|3262001_3262892_-	acyltransferase	NA	NA	NA	NA	NA
AZY86129.1|3262888_3263743_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY86130.1|3263891_3265190_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY86131.1|3265300_3265552_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY86132.1|3265631_3266672_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY86133.1|3266951_3268370_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY86134.1|3268440_3268776_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY86135.1|3268775_3269618_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY86136.1|3269716_3270667_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	3282496	3333375	4107611	integrase,tRNA,protease,transposase	Planktothrix_phage(33.33%)	40	3316171:3316189	3336059:3336077
AZY86145.1|3282496_3283447_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86998.1|3283759_3285238_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY86146.1|3285244_3286354_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY86147.1|3286365_3287046_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY86148.1|3287067_3287823_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY86999.1|3287958_3288843_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY86149.1|3288930_3289512_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86150.1|3289604_3289727_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86151.1|3289772_3290072_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY87000.1|3290223_3290649_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86152.1|3292855_3293359_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY86153.1|3293374_3294325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86154.1|3294311_3294509_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86155.1|3294852_3295626_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY86156.1|3295758_3296769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY86157.1|3296920_3298576_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY86158.1|3298630_3298972_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY86159.1|3298985_3300425_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY86160.1|3300557_3301373_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86161.1|3301391_3301580_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86162.1|3301566_3302517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86163.1|3303904_3304852_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86164.1|3305078_3305819_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86165.1|3305904_3306855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86166.1|3308296_3309868_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY86167.1|3310200_3312054_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86168.1|3312098_3314663_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY86169.1|3315081_3316032_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3316171:3316189	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY86170.1|3318897_3319392_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY86171.1|3319408_3320359_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86172.1|3320345_3320546_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86173.1|3320542_3321754_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY86174.1|3321769_3324721_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY86175.1|3324722_3327842_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY87001.1|3327838_3327979_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY86176.1|3327989_3329036_-	Fic family protein	NA	NA	NA	NA	NA
AZY86177.1|3329377_3330505_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY86178.1|3330784_3331876_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY86179.1|3331948_3332731_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY86180.1|3332727_3333375_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3336059:3336077	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 29
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	3382262	3436003	4107611	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY86217.1|3382262_3383213_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86218.1|3383617_3384262_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY86219.1|3384286_3384871_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY86220.1|3384971_3385589_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY86221.1|3385591_3387307_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY86222.1|3387303_3387612_-	urease subunit beta	NA	NA	NA	NA	NA
AZY86223.1|3387628_3388264_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY86224.1|3388290_3388593_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY86225.1|3388693_3389548_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY86226.1|3390129_3390402_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY86227.1|3390819_3391227_-	GFA family protein	NA	NA	NA	NA	NA
AZY86228.1|3391596_3392391_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86229.1|3392491_3393727_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY86230.1|3393795_3394812_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY86231.1|3394808_3396200_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY86232.1|3396196_3397393_+	MFS transporter	NA	NA	NA	NA	NA
AZY86233.1|3397389_3398928_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY86234.1|3398924_3400184_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86235.1|3402124_3403075_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86236.1|3403841_3404936_-	CoA transferase	NA	NA	NA	NA	NA
AZY86237.1|3404928_3406263_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY86238.1|3406216_3406900_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86239.1|3406925_3408089_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY86240.1|3408085_3409087_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY86241.1|3409086_3409959_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY86242.1|3409955_3410705_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY86243.1|3410701_3411493_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY86244.1|3411489_3412629_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY86245.1|3412937_3413690_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY86246.1|3413723_3414506_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY86247.1|3414509_3414899_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY86248.1|3416038_3416902_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY86249.1|3416937_3418026_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86250.1|3418022_3418973_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86251.1|3418959_3419328_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86252.1|3419326_3422305_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86253.1|3423231_3424110_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY86254.1|3426058_3427009_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86255.1|3427005_3427473_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY86256.1|3427515_3428286_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY86257.1|3428306_3429107_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY86258.1|3429117_3430527_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY86259.1|3430621_3431407_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY86260.1|3431646_3432663_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY86261.1|3432770_3433163_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY86262.1|3433300_3433981_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY86263.1|3433985_3434984_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY86264.1|3435052_3436003_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	3442158	3501456	4107611	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
AZY86268.1|3442158_3443922_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY86269.1|3444033_3444912_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY86270.1|3445024_3445840_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY86271.1|3445843_3446095_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY86272.1|3446179_3447196_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY86273.1|3447526_3447748_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86274.1|3450108_3451026_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY86275.1|3451523_3452732_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY86276.1|3452811_3454383_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY86277.1|3454500_3455436_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY86278.1|3455624_3456569_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY86279.1|3456637_3456853_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86280.1|3457136_3462854_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY86281.1|3462859_3463987_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY86282.1|3464042_3464669_+	aminotransferase	NA	NA	NA	NA	NA
AZY86283.1|3464940_3465957_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY86284.1|3466052_3466763_-	oxidoreductase	NA	NA	NA	NA	NA
AZY87004.1|3466759_3467749_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY86285.1|3467880_3469476_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY86286.1|3469478_3470216_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86287.1|3470371_3471244_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY86288.1|3471512_3472733_+	MFS transporter	NA	NA	NA	NA	NA
AZY86289.1|3472729_3473389_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY86290.1|3473460_3474093_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY86291.1|3474122_3474641_+	flavin reductase	NA	NA	NA	NA	NA
AZY86292.1|3474651_3475761_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY86293.1|3475807_3476662_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY86294.1|3476663_3477566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86295.1|3478788_3479739_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86296.1|3481493_3482483_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86297.1|3482658_3483447_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY86298.1|3483443_3484475_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY86299.1|3484493_3485057_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY86300.1|3485112_3486633_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY86301.1|3486896_3487601_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY86302.1|3487608_3488346_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY86303.1|3488451_3488826_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY86304.1|3488868_3490158_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86305.1|3490154_3491324_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY86306.1|3491320_3492160_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY86307.1|3492219_3493155_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY86308.1|3493167_3494118_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86309.1|3494216_3495179_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY86310.1|3495210_3495570_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY86311.1|3495694_3496597_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY86312.1|3496598_3498371_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY86313.1|3498405_3499182_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY86314.1|3500505_3501456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	3516394	3574467	4107611	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
AZY86326.1|3516394_3517345_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86327.1|3517473_3518607_-	peptidase	NA	NA	NA	NA	NA
AZY86328.1|3518650_3519556_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY86329.1|3519558_3521259_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY86330.1|3521255_3522176_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY86331.1|3522183_3523161_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY86332.1|3523219_3524254_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY86333.1|3526228_3526465_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86334.1|3526591_3527455_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY86335.1|3527543_3528365_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY86336.1|3528444_3529182_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY86337.1|3529178_3530171_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY86338.1|3530284_3530947_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86339.1|3530991_3532140_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY86340.1|3534463_3535414_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86341.1|3535754_3536705_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86342.1|3536803_3537754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86343.1|3538050_3538548_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86344.1|3538590_3540366_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY87007.1|3540412_3541240_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY86345.1|3541246_3541981_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY86346.1|3543150_3543945_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86347.1|3544234_3544825_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY86348.1|3544858_3546187_-	amidase	NA	NA	NA	NA	NA
AZY86349.1|3546261_3547407_-	transporter	NA	NA	NA	NA	NA
AZY86350.1|3547518_3548517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86351.1|3548479_3548914_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY86352.1|3550430_3551315_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY86353.1|3551311_3552517_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY86354.1|3552513_3553374_-	endonuclease	NA	NA	NA	NA	NA
AZY86355.1|3553486_3555277_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY86356.1|3555317_3555983_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY86357.1|3555983_3556292_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY87008.1|3556457_3557744_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86358.1|3559177_3560128_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86359.1|3562079_3563294_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY86360.1|3563399_3564389_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY86361.1|3564385_3564994_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY86362.1|3565006_3565636_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY86363.1|3565632_3566253_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY86364.1|3566284_3567076_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY86365.1|3567918_3568383_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY86366.1|3568401_3569328_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY86367.1|3569381_3570668_-	cytochrome c	NA	NA	NA	NA	NA
AZY86368.1|3571598_3572471_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY86369.1|3572467_3573418_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY86370.1|3573516_3574467_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
CP025531	Bordetella pertussis strain I955 chromosome, complete genome	4107611	4006679	4071591	4107611	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY86759.1|4006679_4007165_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86760.1|4007383_4008364_+	protein BugT	NA	NA	NA	NA	NA
AZY86761.1|4008630_4009440_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY86762.1|4009479_4010160_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY86763.1|4010153_4010612_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY86764.1|4010623_4010986_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY86765.1|4011068_4011752_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY86766.1|4011807_4012116_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY86767.1|4012134_4012449_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY86768.1|4012445_4014920_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY86769.1|4014927_4016319_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY86770.1|4016315_4016501_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY86771.1|4016479_4017181_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY86772.1|4017177_4017999_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY87029.1|4017979_4019104_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY86773.1|4019096_4020116_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY86774.1|4020321_4021356_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY87030.1|4021456_4022248_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY86775.1|4022330_4022705_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY86776.1|4022682_4024092_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY86777.1|4024084_4025467_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY86778.1|4025801_4027406_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY86779.1|4027441_4028455_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY86780.1|4028465_4029392_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY86781.1|4029782_4030733_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86782.1|4030902_4032129_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY86783.1|4032328_4033195_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY86784.1|4033187_4034150_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY86785.1|4034250_4035201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86786.1|4035299_4036250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86787.1|4036348_4037299_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY86788.1|4037295_4038789_-	RND transporter	NA	NA	NA	NA	NA
AZY86789.1|4038785_4041893_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY86790.1|4041889_4044958_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY86791.1|4044954_4046205_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY86792.1|4046385_4047147_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY86793.1|4047179_4047830_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY86794.1|4047832_4048672_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY86795.1|4048912_4049656_+	hypothetical protein	NA	NA	NA	NA	NA
AZY86796.1|4049738_4050086_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY86797.1|4050183_4051026_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY86798.1|4051070_4051958_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY86799.1|4051984_4052173_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY86800.1|4052270_4053728_+	MFS transporter	NA	NA	NA	NA	NA
AZY86801.1|4053714_4055241_+	glycerol kinase	NA	NA	NA	NA	NA
AZY86802.1|4055259_4055727_-	hypothetical protein	NA	NA	NA	NA	NA
AZY86803.1|4055726_4056749_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY86804.1|4056869_4057610_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY86805.1|4057664_4058765_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY86806.1|4058766_4059957_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY86807.1|4060076_4061093_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY86808.1|4061411_4062083_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY86809.1|4062079_4062988_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY86810.1|4063199_4063847_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY86811.1|4067698_4068775_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY86812.1|4068785_4069595_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY86813.1|4069684_4070458_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY86814.1|4070640_4071591_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
