The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	0	122073	4247121	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY68854.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY68855.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY68856.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY68857.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY68858.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY68859.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY68860.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY68861.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY68862.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY68863.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY68864.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY68865.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY68866.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY68867.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY72339.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY68868.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68869.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY68870.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY68871.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68872.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY68873.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68874.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY68875.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY72340.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY68876.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY68877.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY68878.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68879.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY68880.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY68881.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY68882.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY68883.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY68884.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY68885.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY68886.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY68887.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY68888.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68889.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68890.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY68891.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68892.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY68893.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY68894.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68895.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY68896.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY68897.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY68898.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY68899.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY68900.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY68901.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68902.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY68903.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY68904.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68905.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68906.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY68907.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY68908.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY68909.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY68910.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68911.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68912.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY68913.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY68914.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY68915.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY68916.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72341.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68917.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY68918.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
AZY72342.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68919.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY68920.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY68921.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY68922.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY68923.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY68924.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY68925.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY68926.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY68927.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY68928.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY68929.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY68930.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY68931.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68932.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY68933.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY68934.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY68935.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY68936.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY68937.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY68938.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY68939.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY68940.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY68941.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY68942.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY68943.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY68944.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY68945.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY68946.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68947.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY68948.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY68949.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY68950.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY72343.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY68951.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72344.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY68952.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY68953.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY68954.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY68955.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY68956.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY68957.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	164891	225402	4247121	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY68988.1|164891_165842_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68989.1|167285_168188_-	hypothetical protein	NA	NA	NA	NA	NA
AZY68990.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
AZY68991.1|169125_170508_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY68992.1|170541_171171_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY68993.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY68994.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72350.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
AZY68995.1|174299_175250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY68996.1|176365_176893_+	lipoprotein	NA	NA	NA	NA	NA
AZY68997.1|176984_177800_+	lipoprotein	NA	NA	NA	NA	NA
AZY68998.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY68999.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY69000.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69001.1|181331_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY69002.1|182423_184328_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY69003.1|184324_187999_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY69004.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY69005.1|188630_189053_-	glyoxalase	NA	NA	NA	NA	NA
AZY69006.1|189080_189500_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY72351.1|189528_189975_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY69007.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69008.1|190753_193024_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY69009.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY69010.1|194403_195354_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69011.1|195399_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY69012.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY69013.1|197376_198477_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY69014.1|198558_198933_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY69015.1|198992_201857_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY69016.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69017.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
AZY69018.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69019.1|205633_206584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69020.1|206740_207064_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY69021.1|207168_208218_-	cyclase	NA	NA	NA	NA	NA
AZY69022.1|208214_209039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY69023.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
AZY69024.1|209361_209637_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY69025.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY69026.1|210337_211024_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY72352.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69027.1|212055_212781_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY69028.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY69029.1|214273_215206_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY69030.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY69031.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY69032.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY69033.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY69034.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY69035.1|224451_225402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	233333	286920	4247121	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
AZY69042.1|233333_234284_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69043.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69044.1|235317_236268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69045.1|236366_237164_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY69046.1|238113_238524_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY69047.1|239545_240289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69048.1|240332_241376_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY69049.1|241546_243649_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69050.1|245059_246016_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69051.1|246034_246526_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY69052.1|246522_247878_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY69053.1|247878_248577_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY69054.1|248573_249275_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY69055.1|249527_250577_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY69056.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY69057.1|251620_253510_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY69058.1|253596_254235_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72353.1|254377_255622_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY69059.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY69060.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY69061.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
AZY69062.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY69063.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69064.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY69065.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
AZY69066.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69067.1|265570_266521_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69068.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69069.1|267709_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY69070.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY69071.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY69072.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY69073.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY69074.1|274097_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY69075.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY72354.1|277137_278088_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69076.1|278364_278526_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY69077.1|278533_278674_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69078.1|279192_279642_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY69079.1|279651_280263_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY69080.1|280421_281276_-	cytochrome c1	NA	NA	NA	NA	NA
AZY69081.1|281295_282678_-	cytochrome b	NA	NA	NA	NA	NA
AZY69082.1|282742_283384_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY69083.1|283523_283982_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY69084.1|284006_284783_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY72355.1|284836_285973_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY69085.1|285969_286920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	390853	448362	4247121	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY69184.1|390853_391804_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69185.1|391940_392858_+	reductase	NA	NA	NA	NA	NA
AZY69186.1|392854_393103_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY69187.1|393099_394305_+	CoA transferase	NA	NA	NA	NA	NA
AZY69188.1|394377_395373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69189.1|395395_396616_-	CoA transferase	NA	NA	NA	NA	NA
AZY69190.1|396612_397257_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69191.1|398987_399797_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72361.1|400014_401055_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY69192.1|401153_402137_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69193.1|402063_402765_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69194.1|402813_403584_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY69195.1|403580_404822_-	CoA transferase	NA	NA	NA	NA	NA
AZY69196.1|404926_406633_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY69197.1|406629_407526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69198.1|407566_409156_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY69199.1|409205_410198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69200.1|410266_410866_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72362.1|411326_412304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69201.1|412382_413333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69202.1|413421_414336_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY69203.1|414332_414992_+	LysE family translocator	NA	NA	NA	NA	NA
AZY69204.1|415081_416005_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY69205.1|416010_416466_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69206.1|416462_417566_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY72363.1|417485_417794_+	GtrA family protein	NA	NA	NA	NA	NA
AZY69207.1|417753_419373_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY69208.1|419369_420428_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY69209.1|420557_421052_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY69210.1|421144_422122_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69211.1|422317_423523_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY69212.1|423519_425031_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY72364.1|425046_426360_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY69213.1|426550_426730_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69214.1|427139_427874_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY69215.1|430318_431269_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69216.1|431400_431799_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY69217.1|432209_432680_-	universal stress protein	NA	NA	NA	NA	NA
AZY69218.1|432768_433113_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY69219.1|433212_434613_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY69220.1|436401_436920_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY69221.1|437030_437786_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY69222.1|437981_439214_+	CoA transferase	NA	NA	NA	NA	NA
AZY69223.1|439206_439992_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY69224.1|440058_441030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69225.1|441040_442018_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69226.1|442143_443316_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY69227.1|443342_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY69228.1|444436_445630_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY69229.1|447411_448362_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	621847	722311	4247121	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY69382.1|621847_622798_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69383.1|623496_623880_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69384.1|623937_624540_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY72370.1|624557_624959_-	DoxX family protein	NA	NA	NA	NA	NA
AZY69385.1|625092_625986_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69386.1|625982_626564_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY69387.1|627358_628093_+	arginyltransferase	NA	NA	NA	NA	NA
AZY69388.1|628133_629183_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY69389.1|629330_629909_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY69390.1|630295_631273_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY69391.1|631366_635761_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY69392.1|635961_636810_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69393.1|636968_637781_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY69394.1|637836_638787_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69395.1|638885_639686_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69396.1|639747_640131_+	thioredoxin	NA	NA	NA	NA	NA
AZY69397.1|640142_641576_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY69398.1|641782_642112_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY72371.1|642114_642783_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY69399.1|643046_643967_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY69400.1|644013_644226_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY69401.1|644248_644671_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY69402.1|644687_645788_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY69403.1|645884_647402_-	peptidase	NA	NA	NA	NA	NA
AZY69404.1|647477_648317_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY69405.1|648338_649220_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY69406.1|649301_650396_-	porin	NA	NA	NA	NA	NA
AZY69407.1|650689_651640_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72372.1|651714_652656_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69408.1|652739_653099_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69409.1|653480_654518_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69410.1|654834_656175_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY69411.1|656184_656637_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69412.1|656733_657915_+	monooxygenase	NA	NA	NA	NA	NA
AZY69413.1|657974_659006_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY69414.1|659046_659286_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY69415.1|659355_660945_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY69416.1|660944_661493_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY69417.1|661573_662146_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY69418.1|662164_663076_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY69419.1|663149_664118_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY69420.1|664240_665314_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY69421.1|665318_667139_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY69422.1|667215_668166_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69423.1|668254_668590_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY69424.1|668723_669374_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY69425.1|669395_670814_-	amidase	NA	NA	NA	NA	NA
AZY69426.1|670883_671639_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72373.1|671607_672366_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY69427.1|672376_673258_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY69428.1|673274_673982_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY69429.1|673984_674743_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY69430.1|674952_676695_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY69431.1|676687_677212_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY69432.1|677251_678046_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY69433.1|678213_679287_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69434.1|679385_680336_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69435.1|680587_680800_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72374.1|680865_681477_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY69436.1|681956_682277_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69437.1|682269_682968_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69438.1|682982_683204_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69439.1|683221_684172_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72375.1|684847_685297_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY69440.1|685283_686561_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY69441.1|686563_687982_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY72376.1|688010_689066_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY69442.1|689071_689314_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY69443.1|689436_690039_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY69444.1|690467_691418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69445.1|691435_692083_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY69446.1|692092_692344_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69447.1|692406_692889_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY69448.1|692890_693091_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69449.1|693090_693486_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY69450.1|693482_693881_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY69451.1|693877_694300_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69452.1|694307_694808_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY69453.1|695062_695581_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY69454.1|695590_695920_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY69455.1|695937_696228_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY69456.1|696253_698866_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY69457.1|698875_699235_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69458.1|699302_699836_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY69459.1|699832_700222_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY69460.1|700214_704171_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY69461.1|704175_704592_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69462.1|704810_705074_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY69463.1|705073_705886_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69464.1|705890_706133_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69465.1|706111_706663_+	lysozyme	NA	NA	NA	NA	NA
AZY69466.1|706644_707178_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY69467.1|707174_707456_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69468.1|707798_707999_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69469.1|708005_708677_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY69470.1|709032_709719_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY69471.1|709699_710272_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY69472.1|710337_712068_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY69473.1|712120_712549_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY69474.1|712551_713232_+	protein TolQ	NA	NA	NA	NA	NA
AZY69475.1|713231_713690_+	protein TolR	NA	NA	NA	NA	NA
AZY69476.1|713726_714701_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY69477.1|714717_716034_+	protein TolB	NA	NA	NA	NA	NA
AZY69478.1|716065_716563_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY69479.1|716649_717339_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY69480.1|717338_718388_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY69481.1|718384_719179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY69482.1|719347_719698_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69483.1|719673_720231_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69484.1|721155_721374_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69485.1|721360_722311_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	855144	904408	4247121	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
AZY69588.1|855144_856095_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72381.1|856067_856667_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69589.1|856668_857103_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY69590.1|857099_857534_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69591.1|857517_858321_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY69592.1|858337_859153_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY69593.1|859149_859965_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY69594.1|860111_860813_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69595.1|860840_862799_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY69596.1|862881_863832_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69597.1|864052_864721_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY69598.1|864844_865951_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY69599.1|865963_869077_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY69600.1|869073_870567_+	RND transporter	NA	NA	NA	NA	NA
AZY69601.1|870581_871253_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY69602.1|871296_871791_-	azurin	NA	NA	NA	NA	NA
AZY69603.1|871931_872579_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY72382.1|872682_874731_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY69604.1|874727_876740_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY69605.1|876765_878100_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY69606.1|878208_879201_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69607.1|879267_881352_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY69608.1|881376_882348_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69609.1|882476_883478_-	peptidase M14	NA	NA	NA	NA	NA
AZY69610.1|883511_884753_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY69611.1|884833_885757_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY69612.1|885834_886659_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY72383.1|886855_887872_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY69613.1|888068_889052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69614.1|890650_892039_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY69615.1|892069_893059_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69616.1|893169_894402_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY69617.1|894683_895484_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69618.1|895506_897738_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY69619.1|898525_898972_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY69620.1|898993_899740_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY69621.1|899883_900861_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY69622.1|901494_902106_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY69623.1|902099_903317_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY69624.1|903457_904408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	914020	964285	4247121	transposase	Bacillus_phage(28.57%)	47	NA	NA
AZY69633.1|914020_914971_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69634.1|914967_916818_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY69635.1|917198_917858_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY69636.1|917945_918098_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69637.1|918206_918374_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69638.1|918385_919066_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY69639.1|919347_920064_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY69640.1|920078_921380_-	phospholipase	NA	NA	NA	NA	NA
AZY69641.1|923524_926413_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZY69642.1|926636_927989_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY69643.1|928017_928539_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY69644.1|928535_929990_+	carboxylase	NA	NA	NA	NA	NA
AZY69645.1|930024_930273_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69646.1|930378_931254_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69647.1|931279_932335_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69648.1|932347_933139_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69649.1|933171_934542_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY69650.1|935718_936669_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69651.1|936721_936943_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69652.1|937102_937315_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69653.1|937434_938553_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY69654.1|938649_938865_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69655.1|939058_939310_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69656.1|939422_940373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69657.1|940369_940753_-	ferredoxin	NA	NA	NA	NA	NA
AZY69658.1|940807_942625_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY72385.1|942771_943599_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY69659.1|943644_944625_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY69660.1|944621_944834_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69661.1|944830_946012_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY69662.1|946175_946910_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY69663.1|946911_949524_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY69664.1|949659_951573_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY69665.1|952188_952599_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY69666.1|952696_953782_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY69667.1|953880_954831_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69668.1|954827_955802_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69669.1|955926_956838_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY72386.1|957114_957507_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY69670.1|957636_958587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69671.1|958616_958799_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY69672.1|958837_959095_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69673.1|959571_960753_-	MFS transporter	NA	NA	NA	NA	NA
AZY69674.1|960968_961646_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY69675.1|961642_962416_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY69676.1|962493_963075_-	OmpA family protein	NA	NA	NA	NA	NA
AZY69677.1|963334_964285_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	979046	1049406	4247121	transposase	Streptococcus_phage(14.29%)	56	NA	NA
AZY69691.1|979046_979997_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69692.1|980077_980989_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY69693.1|981049_982195_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY69694.1|982214_983129_+	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY69695.1|983200_983950_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY69696.1|983949_984879_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY69697.1|985122_986949_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY69698.1|987031_987673_+	peroxiredoxin	NA	NA	NA	NA	NA
AZY69699.1|987862_988897_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY69700.1|990733_991798_+	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY72387.1|992595_993504_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY69701.1|994991_996266_+	radical SAM protein	NA	NA	NA	NA	NA
AZY69702.1|996419_996800_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69703.1|996807_997680_-	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY69704.1|997985_998366_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY69705.1|998576_999302_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY69706.1|999397_1000348_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69707.1|1000452_1001502_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY72388.1|1001639_1002656_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY69708.1|1004164_1004737_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY69709.1|1004796_1005528_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY72389.1|1005579_1006497_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69710.1|1007304_1010484_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY69711.1|1010480_1011956_+	multidrug transporter	NA	NA	NA	NA	NA
AZY69712.1|1012025_1012277_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY69713.1|1012422_1013073_-	SCO family protein	NA	NA	NA	NA	NA
AZY69714.1|1013223_1015338_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY69715.1|1015413_1016265_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY69716.1|1016261_1016888_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY69717.1|1016884_1018639_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY69718.1|1018931_1021637_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY69719.1|1021649_1023311_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY69720.1|1023323_1025114_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY69721.1|1025335_1026511_-	flagellin FliC	NA	NA	NA	NA	NA
AZY69722.1|1026553_1027504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69723.1|1027602_1028343_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY69724.1|1028537_1030574_+	transketolase	NA	NA	NA	NA	NA
AZY69725.1|1030591_1031602_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY69726.1|1031719_1032913_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY69727.1|1032942_1033716_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY69728.1|1033712_1034903_-	acetate kinase	NA	NA	NA	NA	NA
AZY69729.1|1034928_1035867_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY72390.1|1035863_1038212_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY69730.1|1038366_1039074_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY69731.1|1039111_1040245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69732.1|1040521_1041070_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY69733.1|1041088_1041574_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY69734.1|1041751_1042690_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY69735.1|1042692_1043010_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69736.1|1043055_1044000_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69737.1|1045680_1046331_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY69738.1|1046384_1046720_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69739.1|1046716_1047577_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY69740.1|1047593_1047875_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69741.1|1047948_1048212_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY69742.1|1048455_1049406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1061624	1120055	4247121	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
AZY72391.1|1061624_1062641_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY72392.1|1063471_1064479_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY69755.1|1064475_1066119_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY69756.1|1066115_1067018_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY69757.1|1067143_1067617_-	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY69758.1|1067606_1068629_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY69759.1|1068625_1070053_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY72393.1|1070990_1072007_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY69760.1|1072339_1073275_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY69761.1|1073324_1075205_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY69762.1|1075271_1075616_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY69763.1|1075760_1076897_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY69764.1|1076893_1077967_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY69765.1|1078124_1079561_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY72394.1|1079651_1080293_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY72395.1|1080628_1081645_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY69766.1|1083521_1083701_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72396.1|1083687_1084638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72397.1|1085840_1087262_-	siroheme synthase	NA	NA	NA	NA	NA
AZY69767.1|1087525_1088242_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69768.1|1088326_1088644_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY69769.1|1088684_1089098_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY69770.1|1089099_1089459_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69771.1|1089501_1091046_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY69772.1|1091129_1091960_+	transglycosylase	NA	NA	NA	NA	NA
AZY69773.1|1091994_1093149_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY69774.1|1093191_1094064_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69775.1|1094180_1096469_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY69776.1|1097675_1098140_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY69777.1|1098166_1099117_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72398.1|1099484_1100261_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY69778.1|1100305_1101163_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY69779.1|1101184_1102201_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY69780.1|1102335_1103376_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY69781.1|1103570_1105652_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY69782.1|1105887_1107381_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY69783.1|1107611_1108406_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY69784.1|1108626_1109985_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY69785.1|1109981_1110824_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY69786.1|1110842_1112729_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY69787.1|1112966_1113599_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY69788.1|1113617_1114220_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69789.1|1114371_1115322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69790.1|1116124_1116925_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69791.1|1116968_1117955_-	homoserine kinase	NA	NA	NA	NA	NA
AZY69792.1|1118094_1119108_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY69793.1|1119104_1120055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1159753	1221924	4247121	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
AZY69821.1|1159753_1160704_-|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY69822.1|1160802_1161435_-	fimbrial protein	NA	NA	NA	NA	NA
AZY69823.1|1161599_1163882_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY69824.1|1164036_1166733_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY69825.1|1166858_1167347_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY69826.1|1169757_1172628_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY69827.1|1172673_1173888_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY69828.1|1174117_1175545_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY69829.1|1175585_1176734_+	cell division protein ZapE	NA	NA	NA	NA	NA
AZY69830.1|1176746_1177505_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY69831.1|1177592_1178495_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69832.1|1178491_1179442_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69833.1|1179571_1180555_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69834.1|1180609_1181332_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY69835.1|1182810_1184166_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
AZY69836.1|1184246_1186622_-	protein tex	NA	NA	NA	NA	NA
AZY69837.1|1186786_1188862_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
AZY69838.1|1188923_1189724_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
AZY69839.1|1189825_1190788_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AZY69840.1|1190775_1191531_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
AZY69841.1|1191638_1193276_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
AZY69842.1|1193343_1194081_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY69843.1|1194183_1194759_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
AZY69844.1|1194931_1195468_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69845.1|1195470_1195815_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
AZY69846.1|1195830_1196676_+	FTR1 family iron permease	NA	NA	NA	NA	NA
AZY69847.1|1196714_1198094_+	4Fe-4S binding domain-containing protein	NA	NA	NA	NA	NA
AZY69848.1|1198171_1199053_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY69849.1|1199151_1200102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69850.1|1200098_1200509_-	VOC family protein	NA	NA	NA	NA	NA
AZY69851.1|1200616_1201471_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA	NA
AZY69852.1|1201463_1202426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69853.1|1202471_1203596_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
AZY72400.1|1203707_1204580_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69854.1|1204704_1205484_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY69855.1|1205637_1207059_+	MFS transporter	NA	NA	NA	NA	NA
AZY69856.1|1207493_1209191_+	sodium:proline symporter	NA	NA	NA	NA	NA
AZY69857.1|1209219_1209342_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72401.1|1209417_1210359_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
AZY69858.1|1210685_1211432_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69859.1|1211439_1212366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69860.1|1212487_1213405_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY69861.1|1213444_1214398_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY69862.1|1214422_1215001_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
AZY69863.1|1216674_1217283_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69864.1|1217360_1217714_-	hypothetical protein	NA	NA	NA	NA	NA
AZY69865.1|1217797_1218787_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY69866.1|1218989_1219940_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69867.1|1220026_1220977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69868.1|1220973_1221924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1272852	1330062	4247121	transposase	Klosneuvirus(16.67%)	51	NA	NA
AZY69906.1|1272852_1273803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69907.1|1277549_1278161_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY69908.1|1278383_1279844_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY69909.1|1279940_1281533_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY69910.1|1281519_1281798_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69911.1|1281856_1282144_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY69912.1|1282145_1283486_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY69913.1|1283581_1284271_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69914.1|1284283_1285714_+	MFS transporter	NA	NA	NA	NA	NA
AZY69915.1|1287438_1288260_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69916.1|1288270_1289842_+	amidohydrolase	NA	NA	NA	NA	NA
AZY69917.1|1289870_1290848_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY69918.1|1290874_1291678_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY69919.1|1291674_1292469_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY69920.1|1292476_1293712_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY69921.1|1293704_1294139_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY69922.1|1294888_1295839_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69923.1|1296460_1298188_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY69924.1|1298299_1299658_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY69925.1|1299778_1299964_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69926.1|1299950_1300901_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69927.1|1300941_1302012_+	FUSC family protein	NA	NA	NA	NA	NA
AZY72403.1|1302034_1302913_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY69928.1|1303084_1304056_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY69929.1|1304218_1305061_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY69930.1|1305222_1305903_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY69931.1|1305896_1307066_+	amine oxidase	NA	NA	NA	NA	NA
AZY69932.1|1307062_1308094_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY69933.1|1308137_1309379_+	MFS transporter	NA	NA	NA	NA	NA
AZY69934.1|1309413_1310946_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY69935.1|1311026_1311650_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY69936.1|1311680_1312292_+	LysE family translocator	NA	NA	NA	NA	NA
AZY69937.1|1312327_1312798_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY69938.1|1312972_1313221_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69939.1|1313228_1314233_+	peptidase M20	NA	NA	NA	NA	NA
AZY69940.1|1314269_1315784_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY69941.1|1315787_1316747_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY69942.1|1316775_1317579_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY69943.1|1317580_1319215_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY69944.1|1319298_1320360_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY69945.1|1320558_1320828_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69946.1|1320831_1321356_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY69947.1|1321771_1322722_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69948.1|1322718_1323789_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY69949.1|1323861_1324500_+	DedA family protein	NA	NA	NA	NA	NA
AZY69950.1|1324794_1325022_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY69951.1|1325144_1325858_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY69952.1|1326102_1327053_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY69953.1|1327156_1327438_+	hypothetical protein	NA	NA	NA	NA	NA
AZY69954.1|1327552_1329001_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY69955.1|1329111_1330062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1420295	1472447	4247121	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
AZY70036.1|1420295_1421246_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70037.1|1421412_1421766_+	cytochrome C	NA	NA	NA	NA	NA
AZY70038.1|1421778_1422141_+	cytochrome	NA	NA	NA	NA	NA
AZY70039.1|1422182_1422608_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY70040.1|1422810_1424067_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY70041.1|1424265_1425246_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70042.1|1425395_1426637_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AZY70043.1|1426735_1427686_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70044.1|1427694_1428390_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY70045.1|1431211_1431811_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY70046.1|1431821_1433987_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY70047.1|1434010_1435795_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY70048.1|1435794_1435884_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY70049.1|1436578_1436851_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY70050.1|1436850_1438917_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY70051.1|1438913_1439864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70052.1|1439962_1440913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70053.1|1441028_1441361_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY70054.1|1441357_1442044_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY70055.1|1442030_1442990_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY72412.1|1443031_1445392_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY70056.1|1445391_1446024_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY70057.1|1446086_1447466_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY70058.1|1447512_1448868_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY70059.1|1449146_1449395_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70060.1|1449582_1449900_-	virulence factor	NA	NA	NA	NA	NA
AZY70061.1|1450172_1450688_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY70062.1|1450781_1450943_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70063.1|1450958_1451714_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY70064.1|1452052_1452259_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70065.1|1452266_1452926_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY70066.1|1453220_1455425_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY70067.1|1455535_1456759_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY70068.1|1456881_1457856_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY70069.1|1457923_1459117_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY70070.1|1459131_1459932_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY70071.1|1459928_1461785_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY70072.1|1461781_1462387_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY70073.1|1462405_1463791_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY70074.1|1464516_1465743_+	transporter	NA	NA	NA	NA	NA
AZY70075.1|1465831_1466614_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY70076.1|1466711_1467662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70077.1|1467688_1468462_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY70078.1|1468473_1469715_+	MFS transporter	NA	NA	NA	NA	NA
AZY70079.1|1471496_1472447_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1516372	1575235	4247121	protease,transposase,tRNA	Streptococcus_virus(11.11%)	53	NA	NA
AZY72413.1|1516372_1516861_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY70127.1|1516978_1517557_+|protease	protease	protease	NA	NA	NA	NA
AZY70128.1|1517629_1518031_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY70129.1|1518129_1519080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70130.1|1519086_1520199_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY70131.1|1520885_1522088_+	MFS transporter	NA	NA	NA	NA	NA
AZY70132.1|1522291_1524952_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70133.1|1524964_1528369_+	nuclease	NA	NA	NA	NA	NA
AZY70134.1|1529036_1531262_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY70135.1|1531308_1531635_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY70136.1|1531685_1532294_+	recombination protein RecR	NA	NA	NA	NA	NA
AZY70137.1|1532392_1533343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70138.1|1533412_1534177_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY70139.1|1534173_1534773_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72414.1|1534876_1535722_-	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY70140.1|1535787_1536414_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY70141.1|1536410_1537361_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70142.1|1537347_1537536_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70143.1|1537459_1538581_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY70144.1|1538561_1539563_-	aminopeptidase	NA	NA	NA	NA	NA
AZY70145.1|1539668_1541180_-	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY70146.1|1541176_1542481_-	peptidase	NA	NA	NA	NA	NA
AZY70147.1|1542592_1543153_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY70148.1|1543420_1543975_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY70149.1|1544430_1544646_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY72415.1|1544900_1547498_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY70150.1|1547494_1548682_+	cupin	NA	NA	NA	NA	NA
AZY70151.1|1549340_1549955_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
AZY70152.1|1550043_1551171_-	lipoprotein	NA	NA	NA	NA	NA
AZY70153.1|1551182_1552088_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY70154.1|1552980_1553931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70155.1|1554112_1554865_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY70156.1|1554933_1555593_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY70157.1|1555589_1556318_+	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY70158.1|1556330_1558610_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY70159.1|1558634_1558838_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY70160.1|1558879_1559527_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY70161.1|1559647_1560565_-	cytochrome C	NA	NA	NA	NA	NA
AZY70162.1|1560561_1561275_-	cytochrome C	NA	NA	NA	NA	NA
AZY70163.1|1561512_1562283_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY70164.1|1562287_1562887_-	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY70165.1|1563131_1564622_+	AMP nucleosidase	NA	NA	NA	NA	NA
AZY70166.1|1564680_1564965_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY70167.1|1564961_1565090_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70168.1|1565102_1565258_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70169.1|1565530_1566457_-	YicC family protein	NA	NA	NA	NA	NA
AZY70170.1|1566593_1567334_+	ribonuclease PH	NA	NA	NA	NA	NA
AZY70171.1|1567500_1568877_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY70172.1|1569058_1569964_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY70173.1|1569998_1571738_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY70174.1|1571615_1573418_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY70175.1|1573535_1574186_+	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY70176.1|1574284_1575235_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1620407	1675998	4247121	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
AZY70207.1|1620407_1621358_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70208.1|1621416_1622190_+	oxidoreductase	NA	NA	NA	NA	NA
AZY70209.1|1622182_1623739_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY70210.1|1623735_1624686_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70211.1|1626012_1626615_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70212.1|1626854_1627556_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY70213.1|1627549_1628332_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY70214.1|1628516_1629467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70215.1|1629565_1630303_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY70216.1|1630492_1631251_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY70217.1|1631297_1632287_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY70218.1|1632464_1633433_-	transporter	NA	NA	NA	NA	NA
AZY70219.1|1634972_1635941_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY70220.1|1635949_1636891_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY70221.1|1637364_1638375_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72419.1|1638365_1639880_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY70222.1|1639876_1641223_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72420.1|1641225_1642260_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY70223.1|1642309_1643935_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY70224.1|1644487_1645438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70225.1|1645542_1646490_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72421.1|1646543_1648358_-	histidine kinase	NA	NA	NA	NA	NA
AZY70226.1|1648350_1649025_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY70227.1|1649154_1652229_+	autotransporter SphB2	NA	NA	NA	NA	NA
AZY70228.1|1652242_1652542_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY72422.1|1652856_1653480_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY70229.1|1653723_1654593_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
AZY70230.1|1654570_1655515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72423.1|1655600_1656572_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY72424.1|1656639_1657413_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY70231.1|1657409_1658606_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY70232.1|1658636_1659587_-	hydrolase	NA	NA	NA	NA	NA
AZY70233.1|1659808_1660498_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY70234.1|1660562_1661318_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY70235.1|1661369_1662362_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY70236.1|1662371_1663325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70237.1|1663440_1664403_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY70238.1|1665804_1666233_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70239.1|1666229_1667180_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72425.1|1667473_1668196_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY70240.1|1668634_1669822_-	MFS transporter	NA	NA	NA	NA	NA
AZY70241.1|1669825_1670206_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70242.1|1671925_1672897_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY70243.1|1672910_1673624_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY70244.1|1673628_1674546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70245.1|1674652_1674949_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70246.1|1675047_1675998_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1833765	1893035	4247121	protease,transposase,tRNA	Klosneuvirus(40.0%)	49	NA	NA
AZY70366.1|1833765_1834716_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70367.1|1834840_1835650_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY70368.1|1835850_1836801_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70369.1|1838074_1839292_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
AZY70370.1|1840348_1841251_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70371.1|1841327_1842200_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY70372.1|1842330_1842699_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
AZY70373.1|1842756_1843803_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AZY70374.1|1843998_1845255_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY70375.1|1845259_1846597_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY70376.1|1846746_1847703_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70377.1|1849175_1849526_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70378.1|1849573_1851148_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY70379.1|1851200_1852145_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY70380.1|1852162_1852993_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY70381.1|1852985_1854620_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
AZY70382.1|1854616_1855972_+	amidase	NA	NA	NA	NA	NA
AZY70383.1|1856878_1858456_+	lipoprotein	NA	NA	NA	NA	NA
AZY70384.1|1858459_1859734_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72431.1|1859831_1860206_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70385.1|1861921_1863055_+	general secretion pathway protein	NA	NA	NA	NA	NA
AZY70386.1|1863092_1863698_+	prepilin-type cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
AZY70387.1|1863694_1864513_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70388.1|1864584_1867209_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY70389.1|1867195_1867450_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY70390.1|1867516_1868098_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70391.1|1868401_1868662_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY70392.1|1868827_1869451_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY70393.1|1869450_1870224_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY70394.1|1870220_1871429_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY70395.1|1871454_1871928_-	RidA family protein	NA	NA	NA	NA	NA
AZY70396.1|1872001_1872952_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70397.1|1873050_1874001_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70398.1|1874099_1875449_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY70399.1|1876214_1876970_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY70400.1|1877062_1879945_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY70401.1|1880267_1880693_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY70402.1|1880720_1881869_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY70403.1|1881865_1882372_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY70404.1|1882378_1883674_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY70405.1|1883714_1885019_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY70406.1|1885020_1885659_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70407.1|1885661_1886822_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY70408.1|1886848_1888204_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY70409.1|1888207_1889278_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY70410.1|1889416_1889653_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY70411.1|1889740_1890847_+	GTPase HflX	NA	NA	NA	NA	NA
AZY70412.1|1890812_1892117_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY70413.1|1892135_1893035_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	1903275	1947598	4247121	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
AZY70421.1|1903275_1904226_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70422.1|1904324_1905275_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70423.1|1905261_1905462_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70424.1|1905474_1906560_+	AI-2E family transporter	NA	NA	NA	NA	NA
AZY70425.1|1906575_1907337_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY70426.1|1907333_1908257_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
AZY70427.1|1908355_1908880_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY70428.1|1908888_1909632_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
AZY70429.1|1909727_1909967_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70430.1|1909980_1910133_-	lipoprotein	NA	NA	NA	NA	NA
AZY70431.1|1910218_1911709_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
AZY70432.1|1911800_1912739_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
AZY70433.1|1912735_1912912_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
AZY70434.1|1912914_1913577_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
AZY72433.1|1915198_1915342_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
AZY70435.1|1915338_1916313_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70436.1|1916479_1917430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70437.1|1917426_1918701_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY70438.1|1918798_1919998_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY70439.1|1919994_1920648_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY70440.1|1920644_1922081_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY70441.1|1922068_1922428_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY70442.1|1923400_1924351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70443.1|1925396_1927262_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY72434.1|1927519_1929040_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY70444.1|1929127_1929778_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY70445.1|1930726_1932022_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY70446.1|1932043_1932928_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72435.1|1933026_1933902_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY70447.1|1933891_1934248_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY70448.1|1934321_1935353_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY70449.1|1935482_1935662_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY70450.1|1935759_1936284_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY70451.1|1936294_1937131_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY70452.1|1937243_1937615_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY70453.1|1937611_1938163_+	ATPase	NA	NA	NA	NA	NA
AZY70454.1|1938178_1939870_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY70455.1|1939918_1940599_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70456.1|1940846_1941311_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70457.1|1941480_1942410_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY70458.1|1942422_1943070_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70459.1|1943143_1944961_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY70460.1|1945044_1945995_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70461.1|1946647_1947598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	2134894	2198984	4247121	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
AZY70610.1|2134894_2136163_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70611.1|2136733_2136946_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70612.1|2136963_2137695_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70613.1|2137729_2138371_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY70614.1|2138363_2139080_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY70615.1|2141244_2142021_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY70616.1|2142042_2143200_-	thiolase	NA	NA	NA	NA	NA
AZY70617.1|2143196_2143628_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70618.1|2143624_2144428_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY70619.1|2144441_2144897_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY70620.1|2144909_2145881_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY70621.1|2145946_2147170_-	CoA transferase	NA	NA	NA	NA	NA
AZY70622.1|2147397_2148348_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70623.1|2148471_2150925_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY70624.1|2151113_2152418_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY70625.1|2152522_2153176_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY70626.1|2153178_2154489_-	trigger factor	NA	NA	NA	NA	NA
AZY70627.1|2154667_2155246_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY70628.1|2155357_2155558_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY70629.1|2155903_2156470_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY70630.1|2156553_2156757_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY70631.1|2157063_2157384_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70632.1|2157425_2157707_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70633.1|2157781_2159038_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY70634.1|2159420_2159750_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY70635.1|2161320_2162142_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY70636.1|2162141_2163281_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY70637.1|2163287_2164184_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY70638.1|2164180_2166106_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY70639.1|2166465_2169078_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY70640.1|2169130_2171431_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY70641.1|2171427_2172636_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY70642.1|2172897_2173272_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70643.1|2173268_2174219_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70644.1|2174317_2176312_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY70645.1|2176371_2177337_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY70646.1|2177326_2180188_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY70647.1|2180190_2180697_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
AZY70648.1|2180801_2182010_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
AZY70649.1|2182011_2182950_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70650.1|2183111_2183585_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY70651.1|2183581_2184532_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70652.1|2184518_2184698_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70653.1|2184642_2185083_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY70654.1|2185211_2186441_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY70655.1|2186479_2187301_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY70656.1|2187354_2188506_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY70657.1|2188597_2189086_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY70658.1|2191612_2194186_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY70659.1|2194256_2196830_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY70660.1|2197095_2197296_+	CsbD family protein	NA	NA	NA	NA	NA
AZY70661.1|2197327_2197489_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY70662.1|2197546_2197885_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY70663.1|2198033_2198984_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	2214954	2272709	4247121	transposase,tRNA	Moraxella_phage(40.0%)	58	NA	NA
AZY72448.1|2214954_2215971_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY70678.1|2216068_2217109_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY70679.1|2217243_2218536_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY70680.1|2219895_2220279_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY70681.1|2220296_2220884_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY70682.1|2220921_2221872_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70683.1|2221970_2222921_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70684.1|2223019_2223580_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY70685.1|2223576_2224122_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70686.1|2224317_2225346_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70687.1|2225386_2226727_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY70688.1|2226835_2227840_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY70689.1|2227946_2230547_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY70690.1|2230645_2231596_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70691.1|2231694_2232645_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70692.1|2232641_2232914_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72449.1|2233172_2235884_-	autotransporter BapA	NA	NA	NA	NA	NA
AZY70693.1|2236451_2237996_+	cardiolipin synthase	NA	NA	NA	NA	NA
AZY70694.1|2237992_2238343_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
AZY70695.1|2238486_2238915_+	serine/threonine protein kinase	NA	NA	NA	NA	NA
AZY70696.1|2238998_2240162_+	alanine racemase	NA	NA	NA	NA	NA
AZY70697.1|2240158_2242600_-	MFS transporter	NA	NA	NA	NA	NA
AZY70698.1|2242684_2244706_+	regulator	NA	NA	NA	NA	NA
AZY70699.1|2244702_2245890_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70700.1|2247216_2247417_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72450.1|2247453_2248152_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70701.1|2248326_2248929_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
AZY70702.1|2248949_2250752_-	EscC/YscC/HrcC family type III secretion system outer membrane ring protein	NA	NA	NA	NA	NA
AZY70703.1|2250742_2251141_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70704.1|2251137_2252187_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
AZY70705.1|2252183_2252984_-	EscT/YscT/HrcT family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY70706.1|2252995_2253271_-	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY70707.1|2253267_2253939_-	EscR/YscR/HrcR family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY72451.1|2253935_2255015_-	YscQ/HrcQ family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZY70708.1|2255011_2255560_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70709.1|2255556_2256066_-	type III secretion protein	NA	NA	NA	NA	NA
AZY70710.1|2256065_2257400_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
AZY70711.1|2257404_2258043_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
AZY70712.1|2258012_2258675_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70713.1|2258667_2259492_-	EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein	NA	NA	NA	NA	NA
AZY70714.1|2259488_2259896_-	EscI/YscI/HrpB family type III secretion system inner rod protein	NA	NA	NA	NA	NA
AZY70715.1|2259892_2260414_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70716.1|2260418_2260880_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZY70717.1|2260903_2262106_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70718.1|2262135_2263077_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70719.1|2263124_2263610_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
AZY70720.1|2263625_2263901_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70721.1|2263922_2264540_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70722.1|2264703_2265801_+	TyeA family type III secretion system gatekeeper subunit	NA	NA	NA	NA	NA
AZY70723.1|2265797_2266175_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
AZY70724.1|2266179_2266590_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70725.1|2266586_2266955_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72452.1|2266951_2269051_+	EscV/YscV/HrcV family type III secretion system export apparatus protein	NA	NA	NA	NA	NA
AZY70726.1|2269047_2270328_+	EscD/YscD/HrpQ family type III secretion system inner membrane ring protein	NA	NA	NA	NA	NA
AZY70727.1|2270368_2270668_+	hypothetical protein	NA	NA	NA	NA	NA
AZY70728.1|2270657_2270924_+	type III secretion protein	NA	NA	NA	NA	NA
AZY70729.1|2270959_2271415_-	Tir chaperone family protein	NA	NA	NA	NA	NA
AZY70730.1|2271758_2272709_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	2479228	2537472	4247121	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
AZY70899.1|2479228_2480179_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70900.1|2480658_2481315_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY70901.1|2481329_2482997_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY70902.1|2482999_2483629_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY70903.1|2483840_2484935_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY70904.1|2485079_2485892_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY70905.1|2485895_2487599_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY70906.1|2487649_2488780_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY70907.1|2488966_2490043_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY72458.1|2490124_2490775_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY70908.1|2490789_2492223_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY70909.1|2492476_2493295_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY70910.1|2493291_2493996_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY70911.1|2494895_2496011_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70912.1|2496044_2496419_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70913.1|2496441_2497599_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY70914.1|2497611_2497845_-	lipoprotein	NA	NA	NA	NA	NA
AZY70915.1|2498479_2501449_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY70916.1|2501463_2501673_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY70917.1|2501824_2502454_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70918.1|2502450_2504568_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY70919.1|2504564_2505245_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY70920.1|2505241_2505802_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY70921.1|2505808_2506906_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY70922.1|2507043_2507652_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY70923.1|2507648_2508941_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY70924.1|2508954_2509497_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY70925.1|2509506_2510343_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY70926.1|2510376_2511438_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY70927.1|2511479_2512532_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY70928.1|2512547_2512850_-	hypothetical protein	NA	NA	NA	NA	NA
AZY70929.1|2512991_2513942_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70930.1|2514120_2515815_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY70931.1|2515811_2516897_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY70932.1|2516944_2517844_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY70933.1|2517854_2518499_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY70934.1|2519520_2522763_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY70935.1|2522773_2523871_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY70936.1|2524133_2525117_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY70937.1|2525215_2526166_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70938.1|2526264_2527215_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70939.1|2527224_2527914_-	VIT family protein	NA	NA	NA	NA	NA
AZY70940.1|2527973_2528411_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY70941.1|2528456_2529350_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY70942.1|2529397_2530570_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY70943.1|2530566_2531721_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY70944.1|2531917_2532268_-	RnfH family protein	NA	NA	NA	NA	NA
AZY70945.1|2532257_2532692_-	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY70946.1|2532708_2533659_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70947.1|2533806_2534274_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY70948.1|2534254_2535412_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY70949.1|2535477_2536404_-	paraslipin	NA	NA	NA	NA	NA
AZY70950.1|2536521_2537472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	2579750	2646250	4247121	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY70989.1|2579750_2580701_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY70990.1|2581070_2581643_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY70991.1|2581645_2582656_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY70992.1|2582648_2583149_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY70993.1|2583159_2583501_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY70994.1|2583512_2584304_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY70995.1|2584320_2584590_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY70996.1|2584612_2585401_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY72462.1|2585447_2586464_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY70997.1|2586680_2588123_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY70998.1|2588301_2589921_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY70999.1|2590041_2591862_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY71000.1|2591940_2593473_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY71001.1|2593506_2595153_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY71002.1|2595222_2596245_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY71003.1|2596262_2597396_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY71004.1|2597398_2598088_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY71005.1|2598087_2598873_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY71006.1|2598916_2599681_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY71007.1|2599719_2601141_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY71008.1|2601206_2601911_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY71009.1|2601958_2602378_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY71010.1|2602390_2602798_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY72463.1|2602981_2603692_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY71011.1|2603818_2604109_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY71012.1|2604126_2604609_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY71013.1|2609114_2610269_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY72464.1|2610574_2611591_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY71014.1|2611837_2612626_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71015.1|2612692_2613373_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY71016.1|2613369_2614140_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY71017.1|2614238_2615189_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71018.1|2615244_2616162_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY71019.1|2616172_2617351_-	mandelate racemase	NA	NA	NA	NA	NA
AZY71020.1|2617370_2618366_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71021.1|2619954_2620563_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY71022.1|2620550_2621591_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY71023.1|2621608_2622571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71024.1|2622567_2623761_-	CoA transferase	NA	NA	NA	NA	NA
AZY71025.1|2623757_2624555_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY71026.1|2624580_2625567_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71027.1|2625585_2627625_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY72465.1|2627826_2628507_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71028.1|2628520_2629432_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY71029.1|2629428_2630007_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY71030.1|2630145_2631051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71031.1|2631058_2634478_+	nuclease	NA	NA	NA	NA	NA
AZY71032.1|2634465_2637066_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY71033.1|2638021_2638654_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71034.1|2639047_2639806_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71035.1|2639802_2641005_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY71036.1|2641192_2642143_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71037.1|2643050_2644196_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY72466.1|2644215_2644938_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY71038.1|2645054_2645234_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71039.1|2645299_2646250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	2718632	2785132	4247121	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY71089.1|2718632_2719583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71090.1|2719952_2720525_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY71091.1|2720527_2721538_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY71092.1|2721530_2722031_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY71093.1|2722041_2722383_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY71094.1|2722394_2723186_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY71095.1|2723202_2723472_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY71096.1|2723494_2724283_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY72472.1|2724329_2725346_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY71097.1|2725562_2727005_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY71098.1|2727183_2728803_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY71099.1|2728923_2730744_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY71100.1|2730822_2732355_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY71101.1|2732388_2734035_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY71102.1|2734104_2735127_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY71103.1|2735144_2736278_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY71104.1|2736280_2736970_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY71105.1|2736969_2737755_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY71106.1|2737798_2738563_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY71107.1|2738601_2740023_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY71108.1|2740088_2740793_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY71109.1|2740840_2741260_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY71110.1|2741272_2741680_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY72473.1|2741863_2742574_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY71111.1|2742700_2742991_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY71112.1|2743008_2743491_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY71113.1|2747996_2749151_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY72474.1|2749456_2750473_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY71114.1|2750719_2751508_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71115.1|2751574_2752255_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY71116.1|2752251_2753022_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY71117.1|2753120_2754071_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71118.1|2754126_2755044_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY71119.1|2755054_2756233_-	mandelate racemase	NA	NA	NA	NA	NA
AZY71120.1|2756252_2757248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71121.1|2758836_2759445_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY71122.1|2759432_2760473_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY71123.1|2760490_2761453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71124.1|2761449_2762643_-	CoA transferase	NA	NA	NA	NA	NA
AZY71125.1|2762639_2763437_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY71126.1|2763462_2764449_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71127.1|2764467_2766507_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY72475.1|2766708_2767389_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71128.1|2767402_2768314_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY71129.1|2768310_2768889_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY71130.1|2769027_2769933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71131.1|2769940_2773360_+	nuclease	NA	NA	NA	NA	NA
AZY71132.1|2773347_2775948_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY71133.1|2776903_2777536_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71134.1|2777929_2778688_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71135.1|2778684_2779887_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY71136.1|2780074_2781025_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71137.1|2781932_2783078_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY72476.1|2783097_2783820_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY71138.1|2783936_2784116_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71139.1|2784181_2785132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	2813241	2850653	4247121	transposase	Planktothrix_phage(33.33%)	39	NA	NA
AZY71151.1|2813241_2814192_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71152.1|2814290_2815241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71153.1|2815333_2815873_+	peroxiredoxin	NA	NA	NA	NA	NA
AZY71154.1|2815979_2816324_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY71155.1|2816381_2817830_-	CoA transferase	NA	NA	NA	NA	NA
AZY71156.1|2818017_2818353_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY71157.1|2819980_2821159_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY71158.1|2821241_2821742_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY71159.1|2821767_2822553_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY71160.1|2822564_2823029_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY71161.1|2823025_2823319_+	biotin--protein ligase	NA	NA	NA	NA	NA
AZY71162.1|2823315_2824092_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY71163.1|2824120_2824948_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY71164.1|2825073_2825544_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71165.1|2825670_2826564_+	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY71166.1|2826611_2827793_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY71167.1|2827805_2828621_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71168.1|2828754_2829282_-	RES domain-containing protein	NA	NA	NA	NA	NA
AZY72479.1|2829278_2829776_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY71169.1|2829923_2830301_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY71170.1|2830522_2831473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72480.1|2831571_2832183_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY71171.1|2832417_2833545_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71172.1|2833655_2834744_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY71173.1|2834796_2835648_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY71174.1|2835667_2836549_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY72481.1|2836725_2838039_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY71175.1|2838249_2839083_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY71176.1|2839079_2839661_+	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY71177.1|2840014_2840965_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71178.1|2840980_2842096_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71179.1|2842198_2843125_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY71180.1|2843124_2844363_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY71181.1|2844359_2845127_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY71182.1|2845127_2845829_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY72482.1|2845910_2846357_-	glutamate racemase	NA	NA	NA	NA	NA
AZY71183.1|2847246_2847885_+	glutathione S-transferase	NA	NA	NA	NA	NA
AZY71184.1|2848653_2849604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71185.1|2849702_2850653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	2949780	3004297	4247121	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
AZY71268.1|2949780_2950731_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71269.1|2950717_2950912_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71270.1|2951059_2951665_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY71271.1|2951718_2953032_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY71272.1|2953106_2953577_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY71273.1|2953576_2954365_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY71274.1|2954375_2956028_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY71275.1|2956115_2957066_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72489.1|2958227_2958734_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY71276.1|2958730_2959495_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY71277.1|2959510_2959795_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY71278.1|2959859_2960849_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY71279.1|2961020_2961950_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY71280.1|2961921_2962608_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY71281.1|2962641_2963187_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY71282.1|2963231_2964497_+	peptidase M48	NA	NA	NA	NA	NA
AZY71283.1|2964493_2965396_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY71284.1|2966577_2967522_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY71285.1|2967616_2969134_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71286.1|2969175_2970804_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY71287.1|2970911_2971793_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71288.1|2974905_2975280_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY71289.1|2975304_2975643_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY71290.1|2975686_2977321_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY71291.1|2977359_2978706_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY72490.1|2978813_2980235_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY71292.1|2980304_2980889_-	nitroreductase	NA	NA	NA	NA	NA
AZY71293.1|2980991_2981942_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71294.1|2982076_2983183_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71295.1|2983193_2984291_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY71296.1|2984435_2985641_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY71297.1|2985647_2986169_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY71298.1|2986165_2986657_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY71299.1|2986653_2986905_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY71300.1|2986885_2987371_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY71301.1|2987506_2990968_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71302.1|2990964_2991870_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY71303.1|2991879_2992311_-	lipoprotein	NA	NA	NA	NA	NA
AZY72491.1|2992557_2993061_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY71304.1|2993072_2994539_+	MFS transporter	NA	NA	NA	NA	NA
AZY71305.1|2994613_2995489_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72492.1|2995485_2996493_-	biotin synthase	NA	NA	NA	NA	NA
AZY71306.1|2996960_2997266_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY71307.1|2997356_2997947_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72493.1|2998137_2999154_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY71308.1|2999345_3001682_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY71309.1|3001764_3002199_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY71310.1|3002297_3003248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71311.1|3003346_3004297_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	3012322	3069107	4247121	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
AZY71319.1|3012322_3013273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71320.1|3014979_3015285_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71321.1|3015953_3016292_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY71322.1|3020844_3021447_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71323.1|3021543_3022833_+	MFS transporter	NA	NA	NA	NA	NA
AZY71324.1|3022890_3023622_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY71325.1|3023618_3024422_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY71326.1|3024418_3025507_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY71327.1|3025503_3026433_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY71328.1|3026581_3027727_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71329.1|3027748_3028699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71330.1|3029029_3032851_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY71331.1|3033007_3033676_-	lipoprotein	NA	NA	NA	NA	NA
AZY71332.1|3033680_3035354_-	MCE family protein	NA	NA	NA	NA	NA
AZY71333.1|3035372_3036692_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY71334.1|3036696_3039048_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY72494.1|3039067_3041236_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY71335.1|3041232_3046422_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY71336.1|3046511_3046826_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY71337.1|3047053_3047299_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY71338.1|3047393_3047912_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY71339.1|3048011_3049217_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY71340.1|3049332_3050730_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY71341.1|3050846_3051425_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY71342.1|3051497_3052889_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY71343.1|3053056_3054007_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71344.1|3054287_3054908_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY71345.1|3054904_3055318_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY71346.1|3055314_3056358_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY71347.1|3056413_3056602_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71348.1|3056611_3057376_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY71349.1|3057466_3058123_+	adenylate kinase	NA	NA	NA	NA	NA
AZY71350.1|3058214_3058973_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY71351.1|3058998_3060600_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY71352.1|3060800_3061805_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY71353.1|3061905_3062169_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY71354.1|3062286_3063063_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY71355.1|3063653_3064604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71356.1|3066987_3068100_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY71357.1|3068156_3069107_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	3099492	3143183	4247121	transposase	Planktothrix_phage(33.33%)	42	NA	NA
AZY71386.1|3099492_3100443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71387.1|3100429_3100675_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71388.1|3100563_3101460_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY71389.1|3103737_3105963_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY71390.1|3106127_3107216_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY71391.1|3107172_3107826_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY71392.1|3107873_3108671_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71393.1|3109202_3110153_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71394.1|3110233_3111382_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY71395.1|3111438_3112389_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71396.1|3112375_3112594_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71397.1|3112487_3112793_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY71398.1|3112821_3113256_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY71399.1|3113257_3114502_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY71400.1|3114498_3115209_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72496.1|3115223_3116135_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71401.1|3116497_3116902_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71402.1|3116898_3117357_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71403.1|3117363_3118272_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72497.1|3118268_3119135_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY71404.1|3119121_3119949_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY71405.1|3119959_3121087_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY71406.1|3122164_3123403_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71407.1|3123444_3124707_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71408.1|3124713_3125466_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY71409.1|3125517_3125703_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72498.1|3125978_3126443_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY71410.1|3126474_3127134_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY71411.1|3127278_3129387_+	AsmA family protein	NA	NA	NA	NA	NA
AZY71412.1|3129383_3130334_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71413.1|3130437_3131058_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72499.1|3131161_3131902_+	oxidoreductase	NA	NA	NA	NA	NA
AZY71414.1|3133036_3134161_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71415.1|3134206_3134575_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71416.1|3134816_3135767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71417.1|3136802_3137345_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71418.1|3137549_3137744_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71419.1|3137730_3138681_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71420.1|3138677_3139643_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71421.1|3139712_3140549_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY71422.1|3141025_3142171_+	porin	NA	NA	NA	NA	NA
AZY71423.1|3142232_3143183_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	3377739	3422958	4247121	holin,transposase	Erwinia_phage(10.0%)	43	NA	NA
AZY71605.1|3377739_3378690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71606.1|3378979_3379444_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
AZY71607.1|3379458_3380964_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
AZY71608.1|3381217_3382825_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY71609.1|3382880_3383786_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY71610.1|3384226_3385177_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71611.1|3385275_3386226_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71612.1|3386307_3386889_-	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA	NA
AZY72518.1|3387313_3387619_+	RND transporter	NA	NA	NA	NA	NA
AZY71613.1|3387632_3388967_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
AZY71614.1|3388988_3389528_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
AZY71615.1|3389675_3390140_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
AZY71616.1|3390282_3391398_-	GTP-binding protein	NA	NA	NA	NA	NA
AZY71617.1|3391674_3392178_-	transcriptional repressor	NA	NA	NA	NA	NA
AZY71618.1|3392315_3392516_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71619.1|3392506_3393229_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
AZY71620.1|3393225_3394122_+	metal ABC transporter permease	NA	NA	NA	NA	NA
AZY71621.1|3394118_3395054_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY72519.1|3395059_3395683_+	DUF1007 domain-containing protein	NA	NA	NA	NA	NA
AZY71622.1|3395673_3396642_+	nickel transporter	NA	NA	NA	NA	NA
AZY71623.1|3396690_3398832_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY71624.1|3398844_3399825_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
AZY71625.1|3399839_3400532_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
AZY71626.1|3400558_3401470_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
AZY71627.1|3401512_3402403_-	acyltransferase	NA	NA	NA	NA	NA
AZY71628.1|3402399_3403254_-	lipid A biosynthesis lauroyl acyltransferase	NA	NA	NA	NA	NA
AZY71629.1|3403402_3404701_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.9	1.6e-125
AZY71630.1|3404811_3405063_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
AZY71631.1|3405142_3406183_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY71632.1|3406462_3407881_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
AZY71633.1|3407951_3408287_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY71634.1|3408286_3409129_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY71635.1|3409227_3410178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71636.1|3410242_3411214_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71637.1|3411277_3412297_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY72520.1|3412298_3413672_-	MFS transporter	NA	NA	NA	NA	NA
AZY71638.1|3413949_3414630_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY71639.1|3414642_3416769_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY71640.1|3416765_3417860_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY71641.1|3417874_3419134_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY71642.1|3419153_3420878_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY71643.1|3421116_3421869_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY71644.1|3422007_3422958_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	3432885	3472886	4247121	protease,transposase,integrase,tRNA	Mycobacterium_phage(50.0%)	29	3455682:3455700	3475570:3475588
AZY71652.1|3432885_3433836_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71653.1|3433822_3434020_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71654.1|3434363_3435137_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71655.1|3435269_3436280_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71656.1|3436431_3438087_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY71657.1|3438141_3438483_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY71658.1|3438496_3439936_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY71659.1|3440068_3440884_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71660.1|3440902_3441091_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71661.1|3441077_3442028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71662.1|3443415_3444363_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71663.1|3444589_3445330_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71664.1|3445415_3446366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71665.1|3447807_3449379_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY71666.1|3449711_3451565_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71667.1|3451609_3454174_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY71668.1|3454592_3455543_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
3455682:3455700	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY71669.1|3458408_3458903_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY71670.1|3458919_3459870_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71671.1|3459856_3460057_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71672.1|3460053_3461265_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY71673.1|3461280_3464232_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY71674.1|3464233_3467353_-	restriction endonuclease	NA	NA	NA	NA	NA
AZY72524.1|3467349_3467490_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY71675.1|3467500_3468547_-	Fic family protein	NA	NA	NA	NA	NA
AZY71676.1|3468888_3470016_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY71677.1|3470295_3471387_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY71678.1|3471459_3472242_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY71679.1|3472238_3472886_-|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3475570:3475588	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 28
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	3521773	3575514	4247121	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY71716.1|3521773_3522724_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71717.1|3523128_3523773_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY71718.1|3523797_3524382_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY71719.1|3524482_3525100_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY71720.1|3525102_3526818_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY71721.1|3526814_3527123_-	urease subunit beta	NA	NA	NA	NA	NA
AZY71722.1|3527139_3527775_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY71723.1|3527801_3528104_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY71724.1|3528204_3529059_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY71725.1|3529640_3529913_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY71726.1|3530330_3530738_-	GFA family protein	NA	NA	NA	NA	NA
AZY71727.1|3531107_3531902_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71728.1|3532002_3533238_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY71729.1|3533306_3534323_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71730.1|3534319_3535711_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY71731.1|3535707_3536904_+	MFS transporter	NA	NA	NA	NA	NA
AZY71732.1|3536900_3538439_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY71733.1|3538435_3539695_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71734.1|3541635_3542586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71735.1|3543352_3544447_-	CoA transferase	NA	NA	NA	NA	NA
AZY71736.1|3544439_3545774_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY71737.1|3545727_3546411_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71738.1|3546436_3547600_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY71739.1|3547596_3548598_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY71740.1|3548597_3549470_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY71741.1|3549466_3550216_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY71742.1|3550212_3551004_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY71743.1|3551000_3552140_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71744.1|3552448_3553201_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY71745.1|3553234_3554017_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY71746.1|3554020_3554410_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY71747.1|3555549_3556413_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY71748.1|3556448_3557537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71749.1|3557533_3558484_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71750.1|3558470_3558839_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71751.1|3558837_3561816_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71752.1|3562742_3563621_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY71753.1|3565569_3566520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71754.1|3566516_3566984_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY71755.1|3567026_3567797_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY71756.1|3567817_3568618_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY71757.1|3568628_3570038_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY71758.1|3570132_3570918_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY72527.1|3571157_3572174_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY71759.1|3572281_3572674_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY71760.1|3572811_3573492_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY71761.1|3573496_3574495_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71762.1|3574563_3575514_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	3581669	3640967	4247121	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY71766.1|3581669_3583433_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY71767.1|3583544_3584423_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY71768.1|3584535_3585351_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY71769.1|3585354_3585606_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY72528.1|3585690_3586707_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY71770.1|3587037_3587259_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71771.1|3589619_3590537_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY71772.1|3591034_3592243_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY71773.1|3592322_3593894_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY71774.1|3594011_3594947_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY71775.1|3595135_3596080_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY71776.1|3596148_3596364_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71777.1|3596647_3602365_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY71778.1|3602370_3603498_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY71779.1|3603553_3604180_+	aminotransferase	NA	NA	NA	NA	NA
AZY72529.1|3604451_3605468_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY71780.1|3605563_3606274_-	oxidoreductase	NA	NA	NA	NA	NA
AZY72530.1|3606270_3607260_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY71781.1|3607391_3608987_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY71782.1|3608989_3609727_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71783.1|3609882_3610755_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY71784.1|3611023_3612244_+	MFS transporter	NA	NA	NA	NA	NA
AZY71785.1|3612240_3612900_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY71786.1|3612971_3613604_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY71787.1|3613633_3614152_+	flavin reductase	NA	NA	NA	NA	NA
AZY71788.1|3614162_3615272_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY71789.1|3615318_3616173_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY71790.1|3616174_3617077_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71791.1|3618299_3619250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71792.1|3621004_3621994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71793.1|3622169_3622958_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY71794.1|3622954_3623986_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY71795.1|3624004_3624568_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY71796.1|3624623_3626144_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY71797.1|3626407_3627112_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY71798.1|3627119_3627857_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY71799.1|3627962_3628337_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY71800.1|3628379_3629669_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71801.1|3629665_3630835_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY71802.1|3630831_3631671_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY71803.1|3631730_3632666_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY71804.1|3632678_3633629_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71805.1|3633727_3634690_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY71806.1|3634721_3635081_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY71807.1|3635205_3636108_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY71808.1|3636109_3637882_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY71809.1|3637916_3638693_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY71810.1|3640016_3640967_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	3655905	3713978	4247121	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZY71822.1|3655905_3656856_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71823.1|3656984_3658118_-	peptidase	NA	NA	NA	NA	NA
AZY71824.1|3658161_3659067_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY71825.1|3659069_3660770_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY71826.1|3660766_3661687_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY71827.1|3661694_3662672_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY71828.1|3662730_3663765_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY71829.1|3665739_3665976_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71830.1|3666102_3666966_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY71831.1|3667054_3667876_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY71832.1|3667955_3668693_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY71833.1|3668689_3669682_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY71834.1|3669795_3670458_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71835.1|3670502_3671651_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY71836.1|3673974_3674925_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71837.1|3675265_3676216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71838.1|3676314_3677265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71839.1|3677561_3678059_+	hypothetical protein	NA	NA	NA	NA	NA
AZY71840.1|3678101_3679877_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY72533.1|3679923_3680751_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY71841.1|3680757_3681492_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY71842.1|3682661_3683456_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY71843.1|3683745_3684336_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY71844.1|3684369_3685698_-	amidase	NA	NA	NA	NA	NA
AZY71845.1|3685772_3686918_-	transporter	NA	NA	NA	NA	NA
AZY71846.1|3687029_3688028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71847.1|3687990_3688425_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY71848.1|3689941_3690826_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY71849.1|3690822_3692028_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY71850.1|3692024_3692885_-	endonuclease	NA	NA	NA	NA	NA
AZY71851.1|3692997_3694788_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY71852.1|3694828_3695494_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY71853.1|3695494_3695803_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY72534.1|3695968_3697255_-	hypothetical protein	NA	NA	NA	NA	NA
AZY71854.1|3698688_3699639_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY71855.1|3701590_3702805_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY71856.1|3702910_3703900_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY71857.1|3703896_3704505_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY71858.1|3704517_3705147_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY71859.1|3705143_3705764_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY71860.1|3705795_3706587_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY71861.1|3707429_3707894_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY71862.1|3707912_3708839_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY71863.1|3708892_3710179_-	cytochrome c	NA	NA	NA	NA	NA
AZY71864.1|3711109_3711982_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY71865.1|3711978_3712929_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY71866.1|3713027_3713978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP025527	Bordetella pertussis strain J139 chromosome, complete genome	4247121	4146190	4211102	4247121	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY72254.1|4146190_4146676_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72255.1|4146894_4147875_+	protein BugT	NA	NA	NA	NA	NA
AZY72256.1|4148141_4148951_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY72257.1|4148990_4149671_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY72258.1|4149664_4150123_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY72259.1|4150134_4150497_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY72260.1|4150579_4151263_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY72261.1|4151318_4151627_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY72262.1|4151645_4151960_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY72263.1|4151956_4154431_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY72264.1|4154438_4155830_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY72265.1|4155826_4156012_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY72266.1|4155990_4156692_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY72267.1|4156688_4157510_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY72556.1|4157490_4158615_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY72268.1|4158607_4159627_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY72269.1|4159832_4160867_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY72557.1|4160967_4161759_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY72270.1|4161841_4162216_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY72271.1|4162193_4163603_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY72272.1|4163595_4164978_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY72273.1|4165312_4166917_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY72274.1|4166952_4167966_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY72275.1|4167976_4168903_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY72276.1|4169293_4170244_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72277.1|4170413_4171640_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY72278.1|4171839_4172706_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY72279.1|4172698_4173661_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY72280.1|4173761_4174712_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72281.1|4174810_4175761_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72282.1|4175859_4176810_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY72283.1|4176806_4178300_-	RND transporter	NA	NA	NA	NA	NA
AZY72284.1|4178296_4181404_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY72285.1|4181400_4184469_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY72286.1|4184465_4185716_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY72287.1|4185896_4186658_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY72288.1|4186690_4187341_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY72289.1|4187343_4188183_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY72290.1|4188423_4189167_+	hypothetical protein	NA	NA	NA	NA	NA
AZY72291.1|4189249_4189597_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY72292.1|4189694_4190537_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY72293.1|4190581_4191469_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY72294.1|4191495_4191684_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY72295.1|4191781_4193239_+	MFS transporter	NA	NA	NA	NA	NA
AZY72296.1|4193225_4194752_+	glycerol kinase	NA	NA	NA	NA	NA
AZY72297.1|4194770_4195238_-	hypothetical protein	NA	NA	NA	NA	NA
AZY72298.1|4195237_4196260_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY72299.1|4196380_4197121_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY72300.1|4197175_4198276_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY72301.1|4198277_4199468_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY72302.1|4199587_4200604_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY72303.1|4200922_4201594_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY72304.1|4201590_4202499_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY72305.1|4202710_4203358_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY72306.1|4207209_4208286_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY72307.1|4208296_4209106_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY72308.1|4209195_4209969_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY72309.1|4210151_4211102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
