The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	0	122073	4103262	tRNA,transposase,protease	Planktothrix_phage(16.67%)	110	NA	NA
AZY54447.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY54448.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY54449.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY54450.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY54451.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY54452.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY54453.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY54454.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY54455.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY54456.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY54457.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY54458.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY54459.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY54460.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY57838.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY54461.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54462.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY54463.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY54464.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54465.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY54466.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54467.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY54468.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY57839.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54469.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY54470.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY54471.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54472.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY54473.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY54474.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY54475.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY54476.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY54477.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY54478.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY54479.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY54480.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY54481.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54482.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54483.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY54484.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54485.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY54486.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY54487.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54488.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY54489.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY54490.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY54491.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY54492.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY54493.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY54494.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54495.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY54496.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY54497.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57840.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54498.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY54499.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY54500.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY54501.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY54502.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54503.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54504.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY54505.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY54506.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY54507.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY54508.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57841.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54509.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY54510.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57842.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54511.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY54512.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY54513.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY54514.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY54515.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY54516.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY54517.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY54518.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY54519.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY54520.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY57843.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY54521.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY54522.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54523.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY54524.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY54525.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY54526.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY54527.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54528.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY54529.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY54530.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY54531.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY54532.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY54533.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY54534.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY54535.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY54536.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY54537.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54538.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY54539.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY54540.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY54541.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY57844.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY54542.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57845.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY54543.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY54544.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY54545.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY54546.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY54547.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY54548.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	164893	225404	4103262	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY54579.1|164893_165844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54580.1|167287_168190_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54581.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
AZY54582.1|169127_170510_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY54583.1|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY54584.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY54585.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57851.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
AZY54586.1|174301_175252_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54587.1|176367_176895_+	lipoprotein	NA	NA	NA	NA	NA
AZY54588.1|176986_177802_+	lipoprotein	NA	NA	NA	NA	NA
AZY54589.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY54590.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY54591.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54592.1|181333_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY54593.1|182425_184330_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY54594.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY54595.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY54596.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
AZY54597.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY57852.1|189530_189977_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY54598.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54599.1|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY54600.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY54601.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54602.1|195401_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY54603.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY54604.1|197378_198479_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY54605.1|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY54606.1|198994_201859_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY54607.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54608.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
AZY54609.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY54610.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54611.1|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY54612.1|207170_208220_-	cyclase	NA	NA	NA	NA	NA
AZY54613.1|208216_209041_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY54614.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
AZY54615.1|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY54616.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY54617.1|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY57853.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54618.1|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY54619.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY54620.1|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY54621.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY54622.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY54623.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY54624.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY54625.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY54626.1|224453_225404_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	233336	286924	4103262	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
AZY54634.1|233336_234287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54635.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54636.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54637.1|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY54638.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY54639.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54640.1|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY54641.1|241549_243652_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54642.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY54643.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY54644.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY54645.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY54646.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY54647.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY54648.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY54649.1|251623_253513_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY54650.1|253599_254238_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57854.1|254380_255625_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY54651.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY54652.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY54653.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
AZY54654.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY54655.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54656.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY54657.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
AZY54658.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY54659.1|265573_266524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54660.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54661.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY54662.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY54663.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY54664.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY54665.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY54666.1|274100_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY54667.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY54668.1|277140_278091_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54669.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54670.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY54671.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54672.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY54673.1|279655_280267_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY54674.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
AZY54675.1|281299_282682_-	cytochrome b	NA	NA	NA	NA	NA
AZY54676.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY54677.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY54678.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY57855.1|284840_285977_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY54679.1|285973_286924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	466027	585347	4103262	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
AZY54833.1|466027_468403_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	tRNA	NA	NA	NA	NA
AZY54834.1|468501_469452_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54835.1|470174_471449_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
AZY54836.1|471535_472618_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
AZY54837.1|472628_473441_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA	NA
AZY54838.1|473477_473804_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA	NA
AZY54839.1|473808_474369_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA	NA
AZY54840.1|474609_475602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY54841.1|475620_476616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY54842.1|476631_478008_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
AZY54843.1|478000_480382_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY57870.1|480398_480788_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57871.1|480914_481145_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54844.1|481249_482200_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54845.1|482298_483249_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY54846.1|483245_484118_-	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY54847.1|485048_486335_+	cytochrome c	NA	NA	NA	NA	NA
AZY54848.1|486388_487315_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY54849.1|487333_487798_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY54850.1|488640_489432_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY54851.1|489463_490084_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY54852.1|490080_490710_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY54853.1|490722_491331_-	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY54854.1|491327_492317_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY54855.1|492422_493637_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY54856.1|495588_496539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57872.1|497972_499259_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54857.1|499424_499733_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY54858.1|499733_500399_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY54859.1|500439_502230_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY54860.1|502342_503203_+	endonuclease	NA	NA	NA	NA	NA
AZY54861.1|503199_504405_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY54862.1|504401_505286_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY54863.1|506802_507237_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY54864.1|507199_508198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54865.1|508309_509455_+	transporter	NA	NA	NA	NA	NA
AZY54866.1|509529_510858_+	amidase	NA	NA	NA	NA	NA
AZY54867.1|510891_511482_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY54868.1|511771_512566_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54869.1|513735_514470_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY57873.1|514476_515304_-	copper resistance protein B	NA	NA	NA	NA	NA
AZY54870.1|515350_517126_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY54871.1|517168_517666_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54872.1|517962_518913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54873.1|519011_519962_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54874.1|520302_521253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54875.1|523576_524725_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY54876.1|524769_525432_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54877.1|525545_526538_+	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY54878.1|526534_527272_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY54879.1|527351_528173_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY54880.1|528261_529125_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY54881.1|529251_529488_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54882.1|531462_532497_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY54883.1|532555_533533_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY54884.1|533540_534461_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY54885.1|534457_536158_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY54886.1|536160_537066_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY54887.1|537109_538243_+	peptidase	NA	NA	NA	NA	NA
AZY54888.1|538371_539322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54889.1|539420_541490_-	ATP-dependent DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
AZY54890.1|541532_543635_-	primosomal protein N'	NA	NA	NA	NA	NA
AZY54891.1|543941_545018_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AZY57874.1|545093_545978_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54892.1|546160_546583_-	ATP synthase epsilon chain	NA	NA	NA	NA	NA
AZY54893.1|546592_547993_-	ATP synthase subunit beta	NA	NA	NA	NA	NA
AZY54894.1|548035_548941_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
AZY54895.1|549039_550581_-	ATP synthase subunit alpha	NA	NA	NA	NA	NA
AZY54896.1|550615_551155_-	ATP synthase subunit delta	NA	NA	NA	NA	NA
AZY54897.1|551167_551638_-	ATP synthase subunit B	NA	NA	NA	NA	NA
AZY54898.1|551775_552018_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
AZY54899.1|552134_553016_-	ATP synthase subunit A	NA	NA	NA	NA	NA
AZY57875.1|553088_553409_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY54900.1|554260_555211_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54901.1|556534_557311_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY54902.1|557345_559118_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY54903.1|559119_560022_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY54904.1|560146_560506_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY54905.1|560537_561500_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY54906.1|561598_562549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54907.1|562561_563497_-	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY54908.1|563556_564396_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY54909.1|564392_565562_-	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY54910.1|565558_566848_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54911.1|566890_567265_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY54912.1|567370_568108_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY54913.1|568115_568820_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY54914.1|569083_570604_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY54915.1|570659_571223_+	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY54916.1|571241_572273_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY54917.1|572269_573058_+	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY54918.1|573233_574223_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54919.1|575979_576930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54920.1|578152_579055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54921.1|579056_579911_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY54922.1|579957_581067_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY54923.1|581077_581596_-	flavin reductase	NA	NA	NA	NA	NA
AZY54924.1|581625_582258_-	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY54925.1|582329_582989_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY54926.1|582985_584206_-	MFS transporter	NA	NA	NA	NA	NA
AZY54927.1|584474_585347_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	589761	653594	4103262	transposase,tRNA	Pandoravirus(12.5%)	49	NA	NA
AZY57877.1|589761_590778_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY54931.1|591049_591676_-	aminotransferase	NA	NA	NA	NA	NA
AZY54932.1|591731_592859_-	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY54933.1|592864_598582_-	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY54934.1|598865_599081_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54935.1|599149_600094_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY54936.1|600282_601218_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY54937.1|601335_602907_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY54938.1|602986_604195_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY54939.1|604692_605610_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY54940.1|607970_608192_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57878.1|608522_609539_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY54941.1|609623_609875_-	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY54942.1|609878_610694_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY54943.1|610806_611685_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY54944.1|611796_613560_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY54945.1|613675_615016_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY54946.1|616085_617510_-	ATP-binding protein	NA	NA	NA	NA	NA
AZY54947.1|617509_618211_-	DNA-binding response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
AZY54948.1|619715_620666_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54949.1|620734_621733_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY54950.1|621737_622418_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY54951.1|622555_622948_+	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY57879.1|623055_624072_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY54952.1|624311_625097_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY54953.1|625191_626601_-	lytic transglycosylase	NA	NA	NA	NA	NA
AZY54954.1|626611_627412_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY54955.1|627432_628203_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY54956.1|628245_628713_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY54957.1|628709_629660_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54958.1|631608_632487_-	fatty acid desaturase	NA	NA	NA	NA	NA
AZY54959.1|633413_636392_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54960.1|636390_636759_+	hypothetical protein	NA	NA	NA	NA	NA
AZY54961.1|636745_637696_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54962.1|637692_638781_-	hypothetical protein	NA	NA	NA	NA	NA
AZY54963.1|638816_639680_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY54964.1|640819_641209_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY54965.1|641212_641995_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY54966.1|642028_642781_-	KR domain-containing protein	NA	NA	NA	NA	NA
AZY54967.1|643089_644229_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY54968.1|644225_645017_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY54969.1|645013_645763_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY54970.1|645759_646632_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY54971.1|646631_647633_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY54972.1|647629_648793_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY54973.1|648818_649502_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY54974.1|649455_650790_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY54975.1|650782_651877_+	CoA transferase	NA	NA	NA	NA	NA
AZY57880.1|652643_653594_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	672505	749814	4103262	transposase,tRNA,integrase,protease	Bacillus_phage(20.0%)	59	719642:719660	739530:739548
AZY54993.1|672505_673456_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY54994.1|673554_675030_-	microcystin degradation protein MlrC	NA	NA	NA	NA	NA
AZY54995.1|676617_677505_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY54996.1|677507_678449_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY54997.1|678494_680060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY57881.1|681837_683121_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
AZY54998.1|683345_684803_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
AZY54999.1|684766_685270_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
AZY55000.1|685294_686266_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
AZY55001.1|686318_686756_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY55002.1|686879_687548_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA	NA
AZY55003.1|688276_689380_+	glycosyl transferase	NA	NA	NA	NA	NA
AZY55004.1|689485_690760_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY55005.1|690771_691797_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY55006.1|691798_693169_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55007.1|693169_694306_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY55008.1|694352_696278_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
AZY55009.1|696274_697396_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY55010.1|697392_698547_+	glycosyl transferase	NA	NA	NA	NA	NA
AZY55011.1|698543_699674_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
AZY55012.1|699681_701247_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY55013.1|701253_702636_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
AZY55014.1|702914_703526_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55015.1|703617_705033_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY55016.1|705050_705761_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY55017.1|705757_707080_+	sensor histidine kinase	NA	NA	NA	NA	NA
AZY55018.1|707159_709121_+	sulfatase	NA	NA	NA	NA	NA
AZY55019.1|709246_710560_-	fumarylacetoacetase	NA	NA	NA	NA	NA
AZY55020.1|710668_711967_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
AZY55021.1|712149_713058_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55022.1|713067_713277_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
AZY55023.1|713288_714968_-	oxidoreductase	NA	NA	NA	NA	NA
AZY55024.1|715069_716023_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY55025.1|716113_716941_-	formamidopyrimidine-DNA glycosylase	NA	NA	NA	NA	NA
AZY55026.1|716939_718826_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY55027.1|718822_719422_+	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
AZY55028.1|719470_720370_+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719642:719660	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
AZY57882.1|720596_721529_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
AZY57883.1|721651_722266_+	50S ribosomal protein L25	NA	NA	NA	NA	NA
AZY55029.1|722343_722991_+|tRNA	peptidyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY55030.1|722987_723770_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AZY55031.1|723842_724934_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
AZY55032.1|725213_726341_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
AZY55033.1|726682_727729_+	Fic family protein	NA	NA	NA	NA	NA
AZY57884.1|727739_727880_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
AZY55034.1|727876_730996_+	restriction endonuclease	NA	NA	NA	NA	NA
AZY55035.1|730997_733949_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
AZY55036.1|733964_735176_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
AZY55037.1|735172_735373_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55038.1|735359_736310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55039.1|736326_736821_+	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY55040.1|736824_737082_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55041.1|737106_738537_+	ATP-dependent helicase	NA	NA	NA	NA	NA
AZY55042.1|738606_738903_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	5.5e-05
AZY55043.1|739686_740637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
739530:739548	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
AZY55044.1|741055_743620_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY55045.1|743664_745518_-	hypothetical protein	NA	NA	NA	NA	NA
AZY55046.1|745850_747422_+	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY55047.1|748863_749814_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1004105	1098142	4103262	transposase	Bacillus_virus(27.27%)	88	NA	NA
AZY55250.1|1004105_1005056_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55251.1|1005158_1005821_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55252.1|1005923_1006334_-	hypothetical protein	NA	NA	NA	NA	NA
AZY55253.1|1006438_1007440_+	amidase	NA	NA	NA	NA	NA
AZY55254.1|1007442_1008639_+	CoA transferase	NA	NA	NA	NA	NA
AZY55255.1|1008659_1009463_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY55256.1|1009543_1009840_+	histidine kinase	NA	NA	NA	NA	NA
AZY55257.1|1009870_1010434_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY57903.1|1010474_1011332_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY55258.1|1011339_1012089_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
AZY55259.1|1012110_1012983_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55260.1|1013011_1013791_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY55261.1|1013824_1014622_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55262.1|1016073_1017246_+	hypothetical protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
AZY55263.1|1017276_1017669_+	RidA family protein	NA	NA	NA	NA	NA
AZY55264.1|1017662_1018523_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY55265.1|1018526_1019489_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY57904.1|1020265_1020955_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
AZY55266.1|1021815_1022766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55267.1|1023115_1023985_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55268.1|1024055_1024751_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
AZY55269.1|1024740_1025250_+	nucleoside deaminase	NA	NA	NA	NA	NA
AZY55270.1|1025246_1026467_+	MFS transporter	NA	NA	NA	NA	NA
AZY55271.1|1026414_1027317_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55272.1|1028203_1029490_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55273.1|1029528_1030902_+	amidase	NA	NA	NA	NA	NA
AZY55274.1|1030940_1031642_-	riboflavin synthase	NA	NA	NA	NA	NA
AZY55275.1|1031940_1032930_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY55276.1|1033030_1033492_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY55277.1|1033507_1034056_-	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY55278.1|1034197_1035673_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
AZY55279.1|1035778_1036870_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY55280.1|1036873_1037656_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY55281.1|1037665_1038454_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
AZY55282.1|1039579_1040014_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY55283.1|1040010_1041021_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY55284.1|1041064_1041991_-	VOC family protein	NA	NA	NA	NA	NA
AZY55285.1|1042277_1042646_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
AZY57905.1|1042862_1043813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57906.1|1043794_1046284_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.3e-86
AZY55286.1|1046332_1047025_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
AZY55287.1|1047097_1048297_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY55288.1|1048314_1049220_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55289.1|1049335_1050265_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY57907.1|1050290_1051637_+	MFS transporter	NA	NA	NA	NA	NA
AZY57908.1|1051664_1052414_+	NAD(P)-dependent oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
AZY55290.1|1052427_1053210_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY55291.1|1053402_1054353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55292.1|1054414_1055560_-	porin	NA	NA	NA	NA	NA
AZY55293.1|1056036_1056873_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
AZY55294.1|1056942_1057908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55295.1|1057904_1058855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55296.1|1058841_1059036_-	hypothetical protein	NA	NA	NA	NA	NA
AZY55297.1|1059240_1059783_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55298.1|1060818_1061769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55299.1|1062010_1062379_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55300.1|1062424_1063549_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57909.1|1064683_1065424_-	oxidoreductase	NA	NA	NA	NA	NA
AZY55301.1|1065527_1066148_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55302.1|1066251_1067202_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55303.1|1067198_1069307_-	AsmA family protein	NA	NA	NA	NA	NA
AZY55304.1|1069451_1070111_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY57910.1|1070142_1070607_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY55305.1|1070882_1071068_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55306.1|1071119_1071872_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY55307.1|1071878_1073141_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY55308.1|1073182_1074421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55309.1|1075498_1076626_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY55310.1|1076636_1077464_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY55311.1|1077450_1078317_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY55312.1|1079683_1080088_-	hypothetical protein	NA	NA	NA	NA	NA
AZY55313.1|1080179_1081130_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57911.1|1081499_1082411_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY55314.1|1082425_1083136_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55315.1|1083132_1084377_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY55316.1|1084378_1084813_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY55317.1|1084841_1085147_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY55318.1|1085040_1085259_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55319.1|1085245_1086196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55320.1|1086252_1087401_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY55321.1|1087481_1088432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55322.1|1088963_1089761_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY55323.1|1089808_1090462_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY55324.1|1090418_1091507_-	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY55325.1|1091671_1093897_-	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY55326.1|1096174_1097071_+	inositol monophosphatase	NA	NA	NA	NA	NA
AZY55327.1|1096959_1097205_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55328.1|1097191_1098142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1128528	1199499	4103262	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
AZY55357.1|1128528_1129479_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55358.1|1129535_1130648_+	malate dehydrogenase	NA	NA	NA	NA	NA
AZY55359.1|1133031_1133982_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55360.1|1134572_1135349_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY55361.1|1135466_1135730_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY55362.1|1135830_1136835_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY55363.1|1137035_1138637_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY55364.1|1138662_1139421_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY55365.1|1139512_1140169_-	adenylate kinase	NA	NA	NA	NA	NA
AZY55366.1|1140259_1141024_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY55367.1|1141033_1141222_-	hypothetical protein	NA	NA	NA	NA	NA
AZY55368.1|1141277_1142321_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY55369.1|1142317_1142731_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY55370.1|1142727_1143348_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY55371.1|1143628_1144579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55372.1|1144746_1146138_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY55373.1|1146210_1146789_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY55374.1|1146905_1148303_+	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY55375.1|1148418_1149624_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY55376.1|1149723_1150242_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY55377.1|1150336_1150582_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY55378.1|1150809_1151124_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY55379.1|1151213_1156403_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY57913.1|1156399_1158568_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY55380.1|1158587_1160939_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY55381.1|1160943_1162263_+	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY55382.1|1162281_1163955_+	MCE family protein	NA	NA	NA	NA	NA
AZY55383.1|1163959_1164628_+	lipoprotein	NA	NA	NA	NA	NA
AZY55384.1|1164784_1168606_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY55385.1|1168936_1169887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55386.1|1169908_1171054_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY55387.1|1171202_1172132_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY55388.1|1172128_1173217_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY55389.1|1173213_1174017_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY55390.1|1174013_1174745_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY55391.1|1174802_1176092_-	MFS transporter	NA	NA	NA	NA	NA
AZY55392.1|1176188_1176791_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55393.1|1181344_1181683_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY55394.1|1182351_1182657_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55395.1|1184363_1185314_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55396.1|1185310_1186642_-	MFS transporter	NA	NA	NA	NA	NA
AZY55397.1|1187881_1189903_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY55398.1|1189895_1190537_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY55399.1|1190533_1190941_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY55400.1|1190937_1191738_+	SURF1 family protein	NA	NA	NA	NA	NA
AZY55401.1|1191812_1192517_+	oxidoreductase	NA	NA	NA	NA	NA
AZY55402.1|1192548_1193343_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY55403.1|1193339_1194290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55404.1|1194388_1195339_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55405.1|1195437_1195872_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY55406.1|1195954_1198291_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
AZY57914.1|1198482_1199499_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1299719	1356930	4103262	transposase	Klosneuvirus(16.67%)	50	NA	NA
AZY55484.1|1299719_1300670_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55485.1|1304416_1305028_-	DUF2239 domain-containing protein	NA	NA	NA	NA	NA
AZY55486.1|1305250_1306711_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
AZY55487.1|1306807_1308400_+	GMP synthase (glutamine-hydrolyzing)	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
AZY55488.1|1308386_1308665_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55489.1|1308723_1309011_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY55490.1|1309012_1310353_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY55491.1|1310448_1311138_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55492.1|1311150_1312581_+	MFS transporter	NA	NA	NA	NA	NA
AZY55493.1|1314305_1315127_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55494.1|1315137_1316709_+	amidohydrolase	NA	NA	NA	NA	NA
AZY55495.1|1316737_1317715_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY55496.1|1317741_1318545_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
AZY55497.1|1318541_1319336_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY55498.1|1319343_1320579_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY55499.1|1320571_1321006_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY55500.1|1321755_1322706_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55501.1|1323327_1325055_-	sodium-independent anion transporter	NA	NA	NA	NA	NA
AZY55502.1|1325166_1326525_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY55503.1|1326645_1326831_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55504.1|1326817_1327768_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55505.1|1327808_1328879_+	FUSC family protein	NA	NA	NA	NA	NA
AZY55506.1|1328901_1329780_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY55507.1|1329951_1330923_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY55508.1|1331085_1331928_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55509.1|1332089_1332770_+	anti-sigma factor	NA	NA	NA	NA	NA
AZY55510.1|1332763_1333933_+	amine oxidase	NA	NA	NA	NA	NA
AZY55511.1|1333929_1334961_+	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY55512.1|1335004_1336246_+	MFS transporter	NA	NA	NA	NA	NA
AZY55513.1|1336280_1337813_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY55514.1|1337893_1338517_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY55515.1|1338547_1339159_+	LysE family translocator	NA	NA	NA	NA	NA
AZY55516.1|1339194_1339665_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY55517.1|1340096_1341101_+	peptidase M20	NA	NA	NA	NA	NA
AZY55518.1|1341137_1342652_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY55519.1|1342655_1343615_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY55520.1|1343643_1344447_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY55521.1|1344448_1346083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY55522.1|1346166_1347228_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY55523.1|1347426_1347696_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55524.1|1347699_1348224_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY55525.1|1348639_1349590_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55526.1|1349586_1350657_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY55527.1|1350729_1351368_+	DedA family protein	NA	NA	NA	NA	NA
AZY55528.1|1351662_1351890_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY55529.1|1352012_1352726_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY55530.1|1352970_1353921_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55531.1|1354024_1354306_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55532.1|1354420_1355869_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY55533.1|1355979_1356930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1447163	1511379	4103262	transposase,tRNA,protease	Salmonella_phage(16.67%)	60	NA	NA
AZY55615.1|1447163_1448114_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55616.1|1448280_1448634_+	cytochrome C	NA	NA	NA	NA	NA
AZY55617.1|1448646_1449009_+	cytochrome	NA	NA	NA	NA	NA
AZY55618.1|1449050_1449476_-	DUF1841 domain-containing protein	NA	NA	NA	NA	NA
AZY55619.1|1449678_1450935_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
AZY55620.1|1451133_1452114_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55621.1|1452263_1453505_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
AZY55622.1|1453603_1454554_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55623.1|1454562_1455258_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
AZY55624.1|1458079_1458679_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
AZY55625.1|1458689_1460855_-	K(+)-transporting ATPase subunit B	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
AZY55626.1|1460878_1462663_-	potassium-transporting ATPase A chain	NA	NA	NA	NA	NA
AZY55627.1|1462662_1462752_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
AZY55628.1|1463446_1463719_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
AZY55629.1|1463718_1465785_+	cation acetate symporter	NA	NA	NA	NA	NA
AZY55630.1|1465781_1466732_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55631.1|1466830_1467781_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55632.1|1467896_1468229_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
AZY55633.1|1468225_1468912_-	DNA mismatch repair protein MutS	NA	NA	NA	NA	NA
AZY55634.1|1468898_1469858_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
AZY57927.1|1469899_1472260_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
AZY55635.1|1472259_1472892_+	outer-membrane lipoprotein carrier protein LolA	NA	NA	NA	NA	NA
AZY55636.1|1472954_1474334_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
AZY55637.1|1474380_1475736_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
AZY55638.1|1476014_1476263_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55639.1|1476450_1476768_-	virulence factor	NA	NA	NA	NA	NA
AZY55640.1|1477040_1477556_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
AZY55641.1|1477649_1477811_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55642.1|1477826_1478582_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY55643.1|1478920_1479127_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55644.1|1479134_1479794_-	antibiotic resistance protein	NA	NA	NA	NA	NA
AZY55645.1|1480088_1482293_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY55646.1|1482403_1483627_-	MFS transporter	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
AZY55647.1|1483749_1484724_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY55648.1|1484791_1485985_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
AZY55649.1|1485999_1486800_-	siderophore ferric iron reductase	NA	NA	NA	NA	NA
AZY55650.1|1486796_1488653_-	IucA/IucC family siderophore biosynthesis protein	NA	NA	NA	NA	NA
AZY55651.1|1488649_1489255_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY55652.1|1489273_1490659_-	alcaligin biosynthesis enzyme	NA	NA	NA	NA	NA
AZY55653.1|1491384_1492611_+	transporter	NA	NA	NA	NA	NA
AZY55654.1|1492699_1493482_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY55655.1|1493580_1494531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55656.1|1494557_1495331_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY55657.1|1495342_1496584_+	MFS transporter	NA	NA	NA	NA	NA
AZY55658.1|1498400_1499228_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
AZY55659.1|1499229_1499940_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY55660.1|1499936_1500536_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
AZY57928.1|1500644_1501238_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
AZY55661.1|1501289_1501472_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
AZY55662.1|1501528_1502587_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
AZY55663.1|1502586_1503573_+	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
AZY55664.1|1503654_1504590_+	[acyl-carrier-protein] S-malonyltransferase	NA	NA	NA	NA	NA
AZY55665.1|1504591_1505344_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
AZY57929.1|1505526_1505766_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
AZY55666.1|1505955_1507185_+	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA	NA
AZY55667.1|1507186_1507687_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55668.1|1507683_1508283_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
AZY55669.1|1508295_1508796_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55670.1|1508792_1509854_+	siderophore-interacting protein	NA	NA	NA	NA	NA
AZY55671.1|1509891_1511379_+|protease	serine protease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 12
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1741114	1789129	4103262	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
AZY55863.1|1741114_1742065_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55864.1|1742163_1744764_-	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY55865.1|1744870_1745875_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY55866.1|1745983_1747324_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY55867.1|1747364_1748393_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55868.1|1748588_1749134_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55869.1|1749130_1749691_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY55870.1|1749789_1750740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55871.1|1750777_1751365_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY55872.1|1751382_1751766_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY55873.1|1753125_1754418_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY55874.1|1754552_1755593_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY57937.1|1755690_1756707_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY55875.1|1756974_1757622_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY55876.1|1757747_1758506_+	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY57938.1|1758580_1759270_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY55877.1|1759287_1760172_+	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY55878.1|1760168_1760948_+	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY55879.1|1760974_1761652_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57939.1|1761940_1762693_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55880.1|1762811_1764212_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY55881.1|1764235_1764634_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY55882.1|1764809_1765010_+	copper chaperone	NA	NA	NA	NA	NA
AZY55883.1|1765148_1765877_+	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY55884.1|1766010_1767426_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY55885.1|1767429_1768293_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY55886.1|1768305_1769055_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY55887.1|1769237_1771253_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY57940.1|1771234_1771783_-	arylesterase	NA	NA	NA	NA	NA
AZY55888.1|1771859_1772579_+	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY55889.1|1772677_1773628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55890.1|1773726_1774677_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55891.1|1774825_1775164_-	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY55892.1|1775221_1775383_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY55893.1|1775414_1775615_-	CsbD family protein	NA	NA	NA	NA	NA
AZY55894.1|1775880_1778454_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY55895.1|1778524_1781098_-	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY55896.1|1783624_1784113_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY55897.1|1784204_1785356_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY55898.1|1785409_1786231_+	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY55899.1|1786269_1787499_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY55900.1|1787627_1788068_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY55901.1|1788012_1788192_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55902.1|1788178_1789129_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1792522	1853727	4103262	tRNA,transposase,protease	Lake_Baikal_phage(21.43%)	53	NA	NA
AZY55907.1|1792522_1795384_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
AZY55908.1|1795373_1796339_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY55909.1|1796398_1798393_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY55910.1|1798491_1799442_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55911.1|1799438_1799813_-	hypothetical protein	NA	NA	NA	NA	NA
AZY55912.1|1800074_1801283_+	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY55913.1|1801279_1803580_+	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY55914.1|1803632_1806245_-	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY55915.1|1806604_1808530_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY55916.1|1808526_1809423_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY55917.1|1809429_1810569_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY55918.1|1810568_1811390_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY55919.1|1812960_1813290_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY55920.1|1813672_1814929_+	autotransporter Phg	NA	NA	NA	NA	NA
AZY55921.1|1815003_1815285_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55922.1|1815326_1815647_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55923.1|1815953_1816157_+	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY55924.1|1816240_1816807_+	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY55925.1|1817152_1817353_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY55926.1|1817464_1818043_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY55927.1|1818221_1819532_+	trigger factor	NA	NA	NA	NA	NA
AZY55928.1|1819534_1820188_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY55929.1|1820292_1821597_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY55930.1|1821785_1824239_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY55931.1|1824362_1825313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY55932.1|1825540_1826764_+	CoA transferase	NA	NA	NA	NA	NA
AZY55933.1|1826829_1827801_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY55934.1|1827813_1828269_+	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY55935.1|1828282_1829086_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY55936.1|1829082_1829514_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55937.1|1829510_1830668_+	thiolase	NA	NA	NA	NA	NA
AZY55938.1|1830689_1831466_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY55939.1|1833630_1834347_+	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY55940.1|1834339_1834981_+	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY55941.1|1835015_1835747_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55942.1|1835764_1835977_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55943.1|1836547_1837498_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55944.1|1839055_1839784_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY55945.1|1839834_1841037_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY55946.1|1841114_1843151_+	UvrABC system protein B	NA	NA	NA	NA	NA
AZY55947.1|1843403_1843895_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY55948.1|1844110_1844623_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY55949.1|1844640_1845852_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY55950.1|1845889_1846300_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY55951.1|1846301_1846625_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY55952.1|1846627_1847140_+	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY55953.1|1847269_1849132_+	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY55954.1|1849141_1849483_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY55955.1|1849482_1849677_+	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY55956.1|1849801_1850695_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY55957.1|1850691_1851642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55958.1|1851766_1852576_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY55959.1|1852776_1853727_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1881510	1922201	4103262	tRNA,transposase,protease	Klosneuvirus(25.0%)	36	NA	NA
AZY55979.1|1881510_1884135_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
AZY55980.1|1884121_1884376_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY55981.1|1884442_1885024_-	hypothetical protein	NA	NA	NA	NA	NA
AZY55982.1|1885327_1885588_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY55983.1|1885753_1886377_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY55984.1|1886376_1887150_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY55985.1|1887146_1888355_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY55986.1|1888380_1888854_-	RidA family protein	NA	NA	NA	NA	NA
AZY55987.1|1888927_1889878_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55988.1|1889976_1890927_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY55989.1|1891025_1892375_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY55990.1|1893140_1893896_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY55991.1|1893988_1896871_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY55992.1|1897193_1897619_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY55993.1|1897646_1898795_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY55994.1|1898791_1899298_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY55995.1|1899304_1900600_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY55996.1|1900640_1901945_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY55997.1|1901946_1902585_+	hypothetical protein	NA	NA	NA	NA	NA
AZY55998.1|1902587_1903748_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY55999.1|1903774_1905130_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY56000.1|1905133_1906204_+	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY56001.1|1906342_1906579_+	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY56002.1|1906666_1907773_+	GTPase HflX	NA	NA	NA	NA	NA
AZY56003.1|1907738_1909043_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY56004.1|1909061_1909961_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY56005.1|1910144_1911302_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY56006.1|1911366_1912674_+	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY56007.1|1912787_1913327_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY56008.1|1913604_1913817_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY56009.1|1913836_1915867_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY57942.1|1916666_1918835_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY56010.1|1919244_1919544_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56011.1|1919828_1920242_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY56012.1|1920201_1921152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56013.1|1921250_1922201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1933405	1981764	4103262	transposase	Klosneuvirus(16.67%)	44	NA	NA
AZY56027.1|1933405_1934356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56028.1|1934352_1935627_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY56029.1|1935724_1936924_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY56030.1|1936920_1937574_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY56031.1|1937570_1939007_+	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY56032.1|1938994_1939354_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY56033.1|1940326_1941277_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56034.1|1941273_1943139_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY57944.1|1943396_1944917_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY56035.1|1945004_1945655_-	flavodoxin family protein	NA	NA	NA	NA	NA
AZY56036.1|1946603_1947899_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY56037.1|1947920_1948805_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57945.1|1948903_1949779_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY56038.1|1949768_1950125_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY56039.1|1950198_1951230_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY56040.1|1951359_1951539_-	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY56041.1|1951636_1952161_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY56042.1|1952171_1953008_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY56043.1|1953120_1953492_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY56044.1|1953488_1954040_+	ATPase	NA	NA	NA	NA	NA
AZY56045.1|1954055_1955747_-	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY56046.1|1955795_1956476_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56047.1|1956723_1957188_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56048.1|1957357_1958287_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY56049.1|1958299_1958947_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56050.1|1959020_1960850_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	1.2e-36
AZY56051.1|1960933_1961884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56052.1|1962536_1963487_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56053.1|1963505_1963853_-	GFA family protein	NA	NA	NA	NA	NA
AZY56054.1|1963881_1965321_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY56055.1|1965339_1965735_-	VOC family protein	NA	NA	NA	NA	NA
AZY56056.1|1965909_1966518_+	peptidase S16	NA	NA	NA	NA	NA
AZY56057.1|1966530_1967349_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY56058.1|1967300_1968275_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY56059.1|1968303_1969365_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56060.1|1969361_1971578_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY56061.1|1971591_1972050_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY56062.1|1972207_1972552_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56063.1|1972708_1973614_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57946.1|1973700_1974714_+	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY57947.1|1976693_1977710_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY56064.1|1977852_1979205_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY56065.1|1979379_1979676_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56066.1|1980813_1981764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	1993260	2057629	4103262	transposase	Vibrio_phage(20.0%)	52	NA	NA
AZY56080.1|1993260_1994211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56081.1|1994197_1994389_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56082.1|1994432_1995383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56083.1|1995481_1996447_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56084.1|1996584_1997484_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56085.1|2000078_2001566_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56086.1|2001576_2002773_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY56087.1|2002845_2004165_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY56088.1|2004161_2005037_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY56089.1|2005067_2006237_-	CoA transferase	NA	NA	NA	NA	NA
AZY56090.1|2006233_2006548_-	ferredoxin	NA	NA	NA	NA	NA
AZY56091.1|2006569_2007292_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY56092.1|2007291_2008110_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY56093.1|2008114_2008642_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY56094.1|2008647_2009913_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY56095.1|2010262_2011402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56096.1|2011479_2012352_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY56097.1|2013222_2014173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56098.1|2014132_2014768_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56099.1|2015127_2016450_-	isocitrate lyase	NA	NA	NA	NA	NA
AZY56100.1|2016678_2017590_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY56101.1|2019014_2019587_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY56102.1|2019626_2021456_-	UvrABC system protein C	NA	NA	NA	NA	NA
AZY56103.1|2021418_2022477_-	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY56104.1|2022514_2022976_-	holo-ACP synthase	NA	NA	NA	NA	NA
AZY56105.1|2023060_2023807_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY56106.1|2025297_2028528_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY56107.1|2028594_2029926_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY56108.1|2030178_2030553_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY56109.1|2030655_2031834_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56110.1|2031844_2032435_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY57949.1|2032545_2033352_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY56111.1|2033377_2034172_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY56112.1|2035172_2036147_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56113.1|2036305_2036818_-	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY56114.1|2036974_2037946_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56115.1|2039690_2040497_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY57950.1|2040493_2041630_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY56116.1|2041745_2042510_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56117.1|2042623_2043394_-	spermidine synthase	NA	NA	NA	NA	NA
AZY56118.1|2043478_2044690_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY56119.1|2044738_2045113_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY56120.1|2045213_2046476_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY56121.1|2046472_2047330_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY56122.1|2047502_2048504_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56123.1|2048955_2049906_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56124.1|2051421_2052621_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY56125.1|2052989_2053226_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY56126.1|2053289_2053457_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY56127.1|2053570_2055466_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY56128.1|2055629_2056580_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56129.1|2056678_2057629_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	2244097	2305445	4103262	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
AZY56267.1|2244097_2245048_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56268.1|2245164_2245884_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56269.1|2246056_2247043_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56270.1|2247043_2247526_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY56271.1|2247529_2248813_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY56272.1|2248809_2249748_+	CoA ester lyase	NA	NA	NA	NA	NA
AZY56273.1|2249744_2251454_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY56274.1|2251463_2252711_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY57958.1|2254321_2255611_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY56275.1|2256748_2257522_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY56276.1|2258183_2258927_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56277.1|2259001_2259742_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56278.1|2259937_2260774_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56279.1|2260824_2261595_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY56280.1|2261644_2262697_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY56281.1|2262693_2263320_-	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY56282.1|2263316_2264363_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY56283.1|2264529_2265546_+	folate-binding protein	NA	NA	NA	NA	NA
AZY57959.1|2265644_2266595_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56284.1|2269335_2270625_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY56285.1|2270743_2271214_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY56286.1|2271224_2272433_-	flavohemoprotein	NA	NA	NA	NA	NA
AZY56287.1|2272579_2273044_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY56288.1|2273067_2274018_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56289.1|2275002_2275776_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY56290.1|2275772_2276771_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56291.1|2276855_2277632_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY56292.1|2277787_2279455_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY56293.1|2279772_2280897_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56294.1|2281023_2281647_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56295.1|2281643_2283545_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY56296.1|2283593_2284388_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY56297.1|2284400_2285402_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY56298.1|2285398_2285905_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY56299.1|2285897_2286746_-	hydrolase	NA	NA	NA	NA	NA
AZY56300.1|2286843_2287386_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56301.1|2287429_2288380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56302.1|2288535_2288862_-	cation:proton antiporter	NA	NA	NA	NA	NA
AZY56303.1|2288858_2289143_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY56304.1|2289139_2289619_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY56305.1|2289615_2291244_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY56306.1|2291240_2291585_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY56307.1|2291584_2294518_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY56308.1|2295676_2296627_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57960.1|2296725_2297022_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56309.1|2297128_2298046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56310.1|2298050_2298764_-	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY56311.1|2298777_2299749_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56312.1|2301468_2301849_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56313.1|2301852_2303040_+	MFS transporter	NA	NA	NA	NA	NA
AZY57961.1|2303478_2304201_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY56314.1|2304494_2305445_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	2326236	2389216	4103262	transposase	Tetraselmis_virus(11.11%)	47	NA	NA
AZY56329.1|2326236_2327187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56330.1|2327739_2329365_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY57966.1|2329414_2330449_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY56331.1|2330451_2331798_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57967.1|2331794_2333309_-	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY56332.1|2333299_2334310_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56333.1|2334783_2335725_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY56334.1|2335733_2336702_-	AAA family ATPase	NA	NA	NA	NA	NA
AZY56335.1|2338241_2339210_+	transporter	NA	NA	NA	NA	NA
AZY56336.1|2339387_2340377_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56337.1|2340423_2341182_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY56338.1|2341371_2342109_+	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY56339.1|2342207_2343158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56340.1|2343342_2344125_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY56341.1|2344118_2344820_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY56342.1|2345059_2345662_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56343.1|2346988_2347939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56344.1|2347935_2349492_-	LTA synthase family protein	NA	NA	NA	NA	NA
AZY56345.1|2349484_2350258_-	oxidoreductase	NA	NA	NA	NA	NA
AZY56346.1|2350316_2351267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56347.1|2351348_2352524_-	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY56348.1|2352537_2354595_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY56349.1|2354591_2355617_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY56350.1|2355628_2356918_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY56351.1|2356940_2358038_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY56352.1|2358034_2358925_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY56353.1|2358921_2361006_-	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY56354.1|2361037_2362207_-	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY56355.1|2362248_2362989_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY56356.1|2362988_2363759_-	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY56357.1|2364614_2365400_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY56358.1|2365426_2367511_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56359.1|2367678_2369634_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY57968.1|2369957_2370458_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY56360.1|2370556_2372083_-	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY57969.1|2372220_2373108_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56361.1|2373122_2374076_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY56362.1|2374127_2376218_-	DNA helicase RecG	NA	NA	NA	NA	NA
AZY56363.1|2376233_2376620_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY56364.1|2379313_2380117_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY56365.1|2381410_2382313_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56366.1|2382377_2383154_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY56367.1|2383475_2384525_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56368.1|2384648_2386319_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY56369.1|2386323_2387118_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY56370.1|2387216_2388167_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56371.1|2388265_2389216_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	2397488	2456351	4103262	transposase,tRNA,protease	uncultured_Caudovirales_phage(11.11%)	53	NA	NA
AZY56379.1|2397488_2398439_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56380.1|2398537_2399188_-	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA	NA
AZY56381.1|2399305_2401108_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY56382.1|2400985_2402725_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.1	1.0e-10
AZY56383.1|2402759_2403665_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY56384.1|2403846_2405223_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY56385.1|2405389_2406130_-	ribonuclease PH	NA	NA	NA	NA	NA
AZY56386.1|2406266_2407193_+	YicC family protein	NA	NA	NA	NA	NA
AZY56387.1|2407465_2407621_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56388.1|2407633_2407762_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56389.1|2407758_2408043_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY56390.1|2408101_2409592_-	AMP nucleosidase	NA	NA	NA	NA	NA
AZY56391.1|2409836_2410436_+	NlpC/P60 family protein	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
AZY56392.1|2410440_2411211_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY56393.1|2411448_2412162_+	cytochrome C	NA	NA	NA	NA	NA
AZY56394.1|2412158_2413076_+	cytochrome C	NA	NA	NA	NA	NA
AZY56395.1|2413196_2413844_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
AZY56396.1|2413885_2414089_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
AZY56397.1|2414113_2416393_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
AZY56398.1|2416405_2417134_-	glutamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
AZY56399.1|2417130_2417790_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
AZY56400.1|2417858_2418611_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
AZY56401.1|2418792_2419743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56402.1|2420635_2421541_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
AZY56403.1|2421552_2422680_+	lipoprotein	NA	NA	NA	NA	NA
AZY56404.1|2422768_2423383_-	fimbrial protein	NA	NA	NA	NA	NA
AZY56405.1|2424041_2425229_-	cupin	NA	NA	NA	NA	NA
AZY57970.1|2425225_2427823_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
AZY56406.1|2428077_2428293_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
AZY56407.1|2428748_2429303_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
AZY56408.1|2429570_2430131_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY56409.1|2430242_2431547_+	peptidase	NA	NA	NA	NA	NA
AZY56410.1|2431543_2433055_+	thiol oxidoreductase	NA	NA	NA	NA	NA
AZY56411.1|2433160_2434162_+	aminopeptidase	NA	NA	NA	NA	NA
AZY56412.1|2434142_2435264_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
AZY56413.1|2435187_2435376_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56414.1|2435362_2436313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56415.1|2436309_2436936_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
AZY57971.1|2437001_2437847_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
AZY56416.1|2437950_2438550_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56417.1|2438546_2439311_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
AZY56418.1|2439380_2440331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56419.1|2440429_2441038_-	recombination protein RecR	NA	NA	NA	NA	NA
AZY56420.1|2441088_2441415_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
AZY56421.1|2441461_2443687_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
AZY56422.1|2444354_2447759_-	nuclease	NA	NA	NA	NA	NA
AZY56423.1|2447771_2450432_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56424.1|2450635_2451838_-	MFS transporter	NA	NA	NA	NA	NA
AZY56425.1|2452524_2453637_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
AZY56426.1|2453643_2454594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56427.1|2454692_2455094_-	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY56428.1|2455166_2455745_-|protease	protease	protease	NA	NA	NA	NA
AZY57972.1|2455862_2456351_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
>prophage 20
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	2494267	2553048	4103262	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
AZY56471.1|2494267_2496217_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY56472.1|2496604_2497381_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY56473.1|2497386_2497779_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56474.1|2498200_2499151_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56475.1|2499147_2500245_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY56476.1|2500276_2501227_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56477.1|2503008_2504250_-	MFS transporter	NA	NA	NA	NA	NA
AZY56478.1|2504261_2505035_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY56479.1|2505061_2506012_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56480.1|2506491_2507148_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY56481.1|2507162_2508830_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY56482.1|2508832_2509462_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56483.1|2509673_2510768_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56484.1|2510912_2511725_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY56485.1|2511728_2513432_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
AZY56486.1|2513482_2514613_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY56487.1|2514799_2515876_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
AZY57973.1|2515957_2516608_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY56488.1|2516622_2518056_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
AZY56489.1|2518309_2519128_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56490.1|2519124_2519829_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
AZY56491.1|2520728_2521844_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56492.1|2521877_2522252_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56493.1|2522274_2523432_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
AZY56494.1|2523444_2523678_-	lipoprotein	NA	NA	NA	NA	NA
AZY56495.1|2524312_2527282_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY56496.1|2527296_2527506_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY56497.1|2527657_2528287_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56498.1|2528283_2530401_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
AZY56499.1|2530397_2531078_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
AZY56500.1|2531074_2531635_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
AZY56501.1|2531641_2532739_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY56502.1|2532876_2533485_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
AZY56503.1|2533481_2534774_+	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY56504.1|2534787_2535330_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
AZY56505.1|2535339_2536176_-	M48 family peptidase	NA	NA	NA	NA	NA
AZY56506.1|2536209_2537271_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
AZY56507.1|2537312_2538365_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AZY56508.1|2538380_2538683_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56509.1|2538824_2539775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56510.1|2539953_2541648_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY56511.1|2541644_2542730_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
AZY56512.1|2542777_2543677_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56513.1|2543687_2544332_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
AZY56514.1|2545353_2548596_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
AZY56515.1|2548606_2549704_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
AZY56516.1|2549966_2550950_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
AZY56517.1|2551048_2551999_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56518.1|2552097_2553048_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	2605585	2672085	4103262	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
AZY56569.1|2605585_2606536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56570.1|2606905_2607478_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
AZY56571.1|2607480_2608491_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
AZY56572.1|2608483_2608984_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
AZY56573.1|2608994_2609336_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
AZY56574.1|2609347_2610139_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA	NA
AZY56575.1|2610155_2610425_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA	NA
AZY56576.1|2610447_2611236_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
AZY57977.1|2611282_2612299_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY56577.1|2612515_2613958_-	PAS domain S-box protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
AZY56578.1|2614136_2615756_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
AZY56579.1|2615876_2617697_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
AZY56580.1|2617775_2619308_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
AZY56581.1|2619341_2620988_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
AZY56582.1|2621057_2622080_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
AZY56583.1|2622097_2623231_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
AZY56584.1|2623233_2623923_-	flagellar L-ring protein	NA	NA	NA	NA	NA
AZY56585.1|2623922_2624708_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
AZY56586.1|2624751_2625516_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
AZY56587.1|2625554_2626976_-	flagellar hook protein FlgE	NA	NA	NA	NA	NA
AZY56588.1|2627041_2627746_-	flagellar basal body rod modification protein	NA	NA	NA	NA	NA
AZY56589.1|2627793_2628213_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
AZY56590.1|2628225_2628633_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
AZY57978.1|2628816_2629527_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
AZY56591.1|2629653_2629944_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
AZY56592.1|2629961_2630444_+	flagellar protein FlgN	NA	NA	NA	NA	NA
AZY56593.1|2634949_2636104_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
AZY57979.1|2636409_2637426_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY56594.1|2637672_2638461_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56595.1|2638527_2639208_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY56596.1|2639204_2639975_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
AZY56597.1|2640073_2641024_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56598.1|2641079_2641997_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
AZY56599.1|2642007_2643186_-	mandelate racemase	NA	NA	NA	NA	NA
AZY56600.1|2643205_2644201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56601.1|2645789_2646398_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
AZY56602.1|2646385_2647426_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY56603.1|2647443_2648406_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56604.1|2648402_2649596_-	CoA transferase	NA	NA	NA	NA	NA
AZY56605.1|2649592_2650390_-	citryl-CoA lyase	NA	NA	NA	NA	NA
AZY56606.1|2650415_2651402_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56607.1|2651420_2653460_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
AZY57980.1|2653661_2654342_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56608.1|2654355_2655267_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY56609.1|2655263_2655842_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY56610.1|2655980_2656886_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56611.1|2656893_2660313_+	nuclease	NA	NA	NA	NA	NA
AZY56612.1|2660300_2662901_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
AZY56613.1|2663856_2664489_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56614.1|2664882_2665641_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56615.1|2665637_2666840_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY56616.1|2667027_2667978_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56617.1|2668885_2670031_+	DUF3182 domain-containing protein	NA	NA	NA	NA	NA
AZY57981.1|2670050_2670773_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY56618.1|2670889_2671069_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56619.1|2671134_2672085_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	2876197	2957475	4103262	transposase,tRNA	Planktothrix_phage(16.67%)	59	NA	NA
AZY56784.1|2876197_2877148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56785.1|2877144_2878047_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56786.1|2878134_2878893_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY56787.1|2878905_2880054_-	cell division protein ZapE	NA	NA	NA	NA	NA
AZY56788.1|2880094_2881522_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
AZY56789.1|2881751_2882966_-	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
AZY56790.1|2883011_2885882_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
AZY56791.1|2888292_2888781_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY56792.1|2888906_2891603_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
AZY56793.1|2891757_2894040_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY56794.1|2894205_2894838_+	fimbrial protein	NA	NA	NA	NA	NA
AZY56795.1|2894936_2895887_+|transposase	IS481 family transposase IS481v2	transposase	NA	NA	NA	NA
AZY56796.1|2895933_2896488_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
AZY56797.1|2896555_2897401_-	PHP domain-containing protein	NA	NA	NA	NA	NA
AZY56798.1|2897470_2898439_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY56799.1|2898438_2900235_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56800.1|2902134_2906061_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY56801.1|2906351_2906528_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56802.1|2906796_2910027_-	autotransporter SphB3	NA	NA	NA	NA	NA
AZY56803.1|2910308_2911136_-	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY56804.1|2911169_2911865_-	lipoprotein-releasing system ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
AZY56805.1|2911857_2913138_-	lipoprotein-releasing system transmembrane subunit LolC	NA	NA	NA	NA	NA
AZY56806.1|2913147_2914125_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57996.1|2914106_2915807_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
AZY56807.1|2915909_2917013_+	peptide chain release factor 2	NA	NA	NA	NA	NA
AZY56808.1|2917043_2917799_+	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY56809.1|2917805_2919326_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
AZY56810.1|2919368_2919671_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56811.1|2919667_2920300_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56812.1|2920378_2922244_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY56813.1|2922240_2923056_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY56814.1|2923063_2924179_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56815.1|2925083_2925962_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY56816.1|2925961_2926786_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY56817.1|2926953_2927904_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56818.1|2928086_2930966_+	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY56819.1|2930947_2931724_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY56820.1|2931816_2933280_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY56821.1|2933276_2933648_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY56822.1|2933665_2934979_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56823.1|2935015_2935474_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY56824.1|2935586_2936537_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56825.1|2936533_2937547_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY56826.1|2937686_2938673_+	homoserine kinase	NA	NA	NA	NA	NA
AZY56827.1|2938716_2939517_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56828.1|2940319_2941270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56829.1|2941421_2942024_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56830.1|2942042_2942675_+	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY56831.1|2942912_2944799_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY56832.1|2944817_2945660_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY56833.1|2945656_2947015_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY56834.1|2947235_2948030_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY56835.1|2948260_2949754_-	exopolyphosphatase	NA	NA	NA	NA	NA
AZY56836.1|2949989_2952071_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY56837.1|2952265_2953306_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY56838.1|2953440_2954457_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY56839.1|2954478_2955336_+	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY57997.1|2955380_2956157_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY56840.1|2956524_2957475_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	2966543	3015481	4103262	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	45	NA	NA
AZY56848.1|2966543_2966957_-|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY56849.1|2966997_2967315_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY56850.1|2967399_2968116_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57998.1|2968379_2969801_+	siroheme synthase	NA	NA	NA	NA	NA
AZY56851.1|2969867_2972615_-	pertactin autotransporter	NA	NA	NA	NA	NA
AZY57999.1|2972947_2973964_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY58000.1|2974299_2974941_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY56852.1|2975031_2976468_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY56853.1|2976625_2977699_+|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY56854.1|2977695_2978832_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY56855.1|2978976_2979321_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY56856.1|2979387_2981268_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY56857.1|2981317_2982253_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY58001.1|2982585_2983602_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY56858.1|2984539_2985967_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY56859.1|2985963_2986986_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
AZY56860.1|2986975_2987449_+	endoribonuclease YbeY	NA	NA	NA	NA	NA
AZY56861.1|2987574_2988477_+	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY56862.1|2988473_2990117_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
AZY58002.1|2990113_2991121_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY58003.1|2991951_2992968_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY56863.1|2993067_2993700_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY56864.1|2993708_2994098_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY56865.1|2994150_2995203_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY56866.1|2996066_2997773_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY56867.1|2997846_2998347_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY56868.1|2998361_3000419_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY56869.1|3000445_3000739_-	response regulator	NA	NA	NA	NA	NA
AZY56870.1|3000840_3001788_-	motility protein MotB	NA	NA	NA	NA	NA
AZY56871.1|3001800_3002676_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY56872.1|3002796_3003357_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY56873.1|3003391_3003715_-	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY56874.1|3004150_3004888_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY56875.1|3005186_3006137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56876.1|3006380_3006644_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY56877.1|3006717_3006999_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56878.1|3007015_3007876_-	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY56879.1|3007872_3008208_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56880.1|3008261_3008912_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY56881.1|3010592_3011537_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56882.1|3011582_3011900_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56883.1|3011902_3012841_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY56884.1|3013018_3013504_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY56885.1|3013522_3014071_+	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY56886.1|3014347_3015481_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	3027088	3099582	4103262	transposase	Bacillus_virus(16.67%)	59	NA	NA
AZY56895.1|3027088_3028039_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56896.1|3028081_3029257_+	flagellin FliC	NA	NA	NA	NA	NA
AZY56897.1|3029478_3031269_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY56898.1|3031281_3032943_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY56899.1|3032955_3035661_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY56900.1|3035953_3037708_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY56901.1|3037704_3038331_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY56902.1|3038327_3039179_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY56903.1|3039254_3041369_+	M3 family peptidase	NA	NA	NA	NA	NA
AZY56904.1|3041519_3042170_+	SCO family protein	NA	NA	NA	NA	NA
AZY56905.1|3042315_3042567_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY56906.1|3042636_3044019_-	multidrug transporter	NA	NA	NA	NA	NA
AZY56907.1|3044015_3047195_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY58005.1|3048002_3048920_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56908.1|3048971_3049703_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY56909.1|3049762_3050335_+	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY58006.1|3051843_3052860_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY56910.1|3052997_3054047_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY56911.1|3054151_3055102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56912.1|3055197_3055923_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
AZY56913.1|3056133_3056514_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
AZY56914.1|3056819_3057692_+	multidrug DMT transporter permease	NA	NA	NA	NA	NA
AZY56915.1|3057699_3058080_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56916.1|3058233_3059508_-	radical SAM protein	NA	NA	NA	NA	NA
AZY58007.1|3060995_3061904_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
AZY56917.1|3062701_3063766_-	sulfate/thiosulfate import ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
AZY56918.1|3065602_3066637_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY56919.1|3066826_3067468_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY56920.1|3067550_3069377_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY56921.1|3069620_3070550_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
AZY56922.1|3070549_3071299_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
AZY56923.1|3071370_3072285_-	deacetylase	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
AZY56924.1|3072304_3073450_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
AZY56925.1|3073510_3074422_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
AZY56926.1|3074502_3075453_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56927.1|3075551_3076136_-	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY56928.1|3076170_3077160_-	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY56929.1|3077156_3078098_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY56930.1|3078094_3079315_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY56931.1|3079357_3079672_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY56932.1|3079863_3080223_-	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY56933.1|3080224_3081955_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY56934.1|3082127_3082799_-	cytidylate kinase	NA	NA	NA	NA	NA
AZY56935.1|3082813_3084142_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY56936.1|3084138_3085038_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY56937.1|3085124_3086210_-	prephenate dehydratase	NA	NA	NA	NA	NA
AZY56938.1|3086202_3087336_-	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY56939.1|3087335_3090017_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY56940.1|3090387_3090969_+	OmpA family protein	NA	NA	NA	NA	NA
AZY56941.1|3091046_3091820_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY56942.1|3091816_3092494_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY56943.1|3092709_3093891_+	MFS transporter	NA	NA	NA	NA	NA
AZY56944.1|3094367_3094625_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56945.1|3094663_3094846_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY56946.1|3094875_3095826_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY58008.1|3095955_3096348_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY56947.1|3096624_3097536_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY56948.1|3097660_3098635_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY56949.1|3098631_3099582_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	3113089	3166607	4103262	transposase,holin	Bacillus_phage(33.33%)	46	NA	NA
AZY56960.1|3113089_3114040_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56961.1|3114152_3114404_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56962.1|3114597_3114813_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56963.1|3114909_3116028_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY56964.1|3116147_3116360_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56965.1|3116519_3116741_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56966.1|3116793_3117744_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56967.1|3118920_3120291_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY56968.1|3120323_3121115_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY56969.1|3121127_3122183_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56970.1|3122208_3123084_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56971.1|3123189_3123438_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56972.1|3123472_3124927_-	carboxylase	NA	NA	NA	NA	NA
AZY56973.1|3124923_3125445_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY56974.1|3125473_3126826_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY56975.1|3127049_3129938_-	HD domain-containing protein	NA	NA	NA	NA	NA
AZY56976.1|3132082_3133384_+	phospholipase	NA	NA	NA	NA	NA
AZY56977.1|3133398_3134115_-	flagellar brake protein	NA	NA	NA	NA	NA
AZY56978.1|3134396_3135077_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY56979.1|3135088_3135256_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56980.1|3135364_3135517_-	hypothetical protein	NA	NA	NA	NA	NA
AZY56981.1|3135604_3136264_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY56982.1|3136644_3138495_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY56983.1|3138491_3139442_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56984.1|3140605_3142321_+	acetolactate synthase, large subunit, biosynthetic type	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
AZY56985.1|3142331_3142823_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
AZY56986.1|3142895_3143912_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
AZY56987.1|3144079_3144859_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY56988.1|3144877_3145405_-	lipoprotein	NA	NA	NA	NA	NA
AZY56989.1|3145403_3145610_+	hypothetical protein	NA	NA	NA	NA	NA
AZY56990.1|3145698_3145968_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
AZY56991.1|3146058_3148218_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
AZY56992.1|3148338_3149058_+	lipoprotein	NA	NA	NA	NA	NA
AZY56993.1|3149054_3150005_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY56994.1|3150145_3151363_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY56995.1|3151356_3151968_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY56996.1|3152601_3153579_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY56997.1|3153722_3154469_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY56998.1|3154490_3154937_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY56999.1|3155724_3157956_+|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY57000.1|3157978_3158779_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57001.1|3159060_3160293_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY57002.1|3160403_3161393_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57003.1|3161423_3162812_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY57004.1|3164410_3165394_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY58010.1|3165590_3166607_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 26
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	3231065	3304227	4103262	transposase	Klosneuvirus(16.67%)	59	NA	NA
AZY57058.1|3231065_3232016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57059.1|3232012_3233032_-	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY57060.1|3233041_3235750_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY57061.1|3235897_3236554_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY57062.1|3236652_3237603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57063.1|3237708_3238644_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY57064.1|3238843_3240538_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY57065.1|3240572_3241499_+	VOC family protein	NA	NA	NA	NA	NA
AZY58013.1|3241567_3242665_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57066.1|3242683_3243547_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY57067.1|3243558_3244341_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY57068.1|3244337_3245456_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY57069.1|3245452_3246985_+	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY57070.1|3247025_3248033_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY57071.1|3248177_3248900_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57072.1|3248915_3249938_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY57073.1|3250254_3250989_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57074.1|3251073_3252819_+	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY57075.1|3252815_3253568_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY57076.1|3253612_3254569_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57077.1|3254657_3255224_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57078.1|3255231_3256092_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
AZY57079.1|3256121_3256865_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY57080.1|3256881_3257565_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY57081.1|3258402_3259317_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY57082.1|3259381_3260290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57083.1|3260380_3261805_-	protein CyaE	NA	NA	NA	NA	NA
AZY57084.1|3261806_3263129_-	protein CyaD	NA	NA	NA	NA	NA
AZY57085.1|3263125_3265264_-	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY57086.1|3265341_3270462_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY58014.1|3270648_3270828_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57087.1|3270910_3271498_+	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY57088.1|3271513_3272995_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY57089.1|3273049_3274903_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57090.1|3275165_3276503_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY57091.1|3276537_3278535_-	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY57092.1|3278552_3280601_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY57093.1|3280731_3281598_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57094.1|3281866_3282832_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY57095.1|3282946_3284095_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY57096.1|3284519_3284831_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY57097.1|3284864_3285125_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY57098.1|3285274_3286408_+	GTPase ObgE	NA	NA	NA	NA	NA
AZY57099.1|3286478_3287615_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY57100.1|3287780_3288575_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY57101.1|3288637_3289081_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY57102.1|3289196_3290147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57103.1|3290133_3290322_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57104.1|3290269_3290677_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY57105.1|3290749_3292945_+	DNA methylase	NA	NA	NA	NA	NA
AZY57106.1|3293166_3294117_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57107.1|3294076_3294601_-	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY57108.1|3294732_3295704_+	FecR family protein	NA	NA	NA	NA	NA
AZY58015.1|3295823_3298268_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY57109.1|3298283_3298874_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY57110.1|3299117_3300068_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57111.1|3300225_3301491_-	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY57112.1|3301524_3302622_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY57113.1|3303276_3304227_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	3315514	3415627	4103262	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(13.79%)	109	NA	NA
AZY57124.1|3315514_3316465_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57125.1|3317196_3317574_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
AZY57126.1|3317558_3318260_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57127.1|3318403_3319096_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
AZY57128.1|3319095_3320199_-	aminoglycoside phosphotransferase	NA	NA	NA	NA	NA
AZY57129.1|3320308_3322681_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
AZY57130.1|3322677_3324237_+	chaperone SurA	NA	NA	NA	NA	NA
AZY57131.1|3324261_3325059_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA	NA
AZY57132.1|3325090_3326236_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
AZY57133.1|3326340_3327783_+	pyruvate kinase	NA	NA	NA	NA	NA
AZY58016.1|3327785_3328874_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57134.1|3331152_3332103_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57135.1|3332089_3332308_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57136.1|3333232_3333790_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57137.1|3333765_3334116_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57138.1|3334284_3335079_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY57139.1|3335075_3336125_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY57140.1|3336124_3336814_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY57141.1|3336900_3337398_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY57142.1|3337429_3338746_-	protein TolB	NA	NA	NA	NA	NA
AZY57143.1|3338762_3339737_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY57144.1|3339773_3340232_-	protein TolR	NA	NA	NA	NA	NA
AZY57145.1|3340231_3340912_-	protein TolQ	NA	NA	NA	NA	NA
AZY57146.1|3340914_3341343_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY57147.1|3341395_3343126_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY57148.1|3343191_3343764_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY57149.1|3343744_3344431_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY57150.1|3344786_3345458_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY57151.1|3345464_3345665_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57152.1|3346007_3346289_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57153.1|3346285_3346819_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY57154.1|3346800_3347352_-	lysozyme	NA	NA	NA	NA	NA
AZY57155.1|3347330_3347573_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57156.1|3347577_3348390_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57157.1|3348389_3348653_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57158.1|3348871_3349288_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57159.1|3349292_3353249_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY57160.1|3353241_3353631_-	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY57161.1|3353627_3354161_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY57162.1|3354228_3354588_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57163.1|3354597_3357210_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY57164.1|3357235_3357526_-	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY57165.1|3357543_3357873_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY57166.1|3357882_3358401_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY57167.1|3358655_3359156_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY57168.1|3359163_3359586_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57169.1|3359582_3359981_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY57170.1|3359977_3360373_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY57171.1|3360372_3360573_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57172.1|3360574_3361057_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY57173.1|3361119_3361371_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57174.1|3361380_3362028_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY57175.1|3362045_3362996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57176.1|3363424_3364027_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY57177.1|3364149_3364392_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY58017.1|3364397_3365453_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY57178.1|3365481_3366900_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY57179.1|3366902_3368180_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY57180.1|3368166_3368616_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY57181.1|3369291_3370242_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57182.1|3370259_3370481_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57183.1|3370495_3371194_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57184.1|3371186_3371507_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58018.1|3371986_3372598_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY57185.1|3372663_3372876_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57186.1|3373127_3374078_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57187.1|3374176_3375250_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57188.1|3375417_3376212_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY57189.1|3376251_3376776_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY57190.1|3376768_3378511_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY57191.1|3378720_3379479_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY57192.1|3379481_3380189_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY57193.1|3380205_3381087_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY57194.1|3381097_3381856_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY58019.1|3381824_3382580_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57195.1|3382649_3384068_+	amidase	NA	NA	NA	NA	NA
AZY57196.1|3384089_3384740_-	carbonic anhydrase	NA	NA	NA	NA	NA
AZY57197.1|3384873_3385209_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY57198.1|3385297_3386248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57199.1|3386324_3388145_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY57200.1|3388149_3389223_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY57201.1|3389345_3390314_+	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY57202.1|3390387_3391299_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY57203.1|3391317_3391890_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY57204.1|3391970_3392519_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY57205.1|3392518_3394108_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY57206.1|3394177_3394417_-	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY57207.1|3394457_3395489_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY57208.1|3395548_3396730_-	monooxygenase	NA	NA	NA	NA	NA
AZY57209.1|3396826_3397279_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57210.1|3397288_3398629_-	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY57211.1|3398945_3399983_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57212.1|3400364_3400724_+	hypothetical protein	NA	NA	NA	NA	NA
AZY58020.1|3400807_3401749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57213.1|3401823_3402774_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57214.1|3403067_3404162_+	porin	NA	NA	NA	NA	NA
AZY57215.1|3404243_3405125_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY57216.1|3405146_3405986_-	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY57217.1|3406061_3407579_+	peptidase	NA	NA	NA	NA	NA
AZY57218.1|3407675_3408776_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY57219.1|3408792_3409215_-	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY57220.1|3409237_3409450_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY57221.1|3409496_3410417_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY58021.1|3410680_3411349_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY57222.1|3411351_3411681_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY57223.1|3411887_3413321_+	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY57224.1|3413332_3413716_-	thioredoxin	NA	NA	NA	NA	NA
AZY57225.1|3413777_3414578_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57226.1|3414676_3415627_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	3703291	3836217	4103262	transposase,tRNA,integrase	uncultured_Mediterranean_phage(10.34%)	118	3747934:3747951	3792574:3792591
AZY57475.1|3703291_3704242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57476.1|3704238_3704874_-	transporter	NA	NA	NA	NA	NA
AZY57477.1|3705003_3705903_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY57478.1|3705998_3706490_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY57479.1|3706536_3707502_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57480.1|3708635_3709877_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY57481.1|3709990_3711007_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY57482.1|3711041_3711518_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57483.1|3711660_3712569_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY57484.1|3712682_3713795_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY57485.1|3713895_3714429_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY57486.1|3714517_3715768_+	kynureninase	NA	NA	NA	NA	NA
AZY57487.1|3715869_3716382_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY57488.1|3716287_3716494_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57489.1|3716480_3717431_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57490.1|3717496_3718435_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY57491.1|3718457_3719084_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY57492.1|3719080_3719737_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY57493.1|3719733_3720336_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57494.1|3720342_3720969_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY57495.1|3721110_3721680_+	bacterioferritin	NA	NA	NA	NA	NA
AZY57496.1|3721750_3723070_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY57497.1|3723176_3723368_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY57498.1|3723619_3724909_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY57499.1|3725063_3726059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57500.1|3726143_3726818_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57501.1|3726814_3727765_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57502.1|3727751_3727934_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57503.1|3727926_3729168_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY57504.1|3729164_3730109_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY57505.1|3730227_3731178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57506.1|3731137_3732067_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57507.1|3732120_3732456_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY57508.1|3732500_3733265_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY57509.1|3733288_3734029_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57510.1|3734036_3735611_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY57511.1|3735624_3736602_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57512.1|3736874_3737474_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY57513.1|3737507_3744410_-	autotransporter BatB	NA	NA	NA	NA	NA
AZY57514.1|3744856_3744988_-	entericidin	NA	NA	NA	NA	NA
AZY57515.1|3745019_3745181_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57516.1|3745253_3745460_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY57517.1|3746464_3747124_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY57518.1|3747151_3748297_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3747934:3747951	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY57519.1|3748437_3748773_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY57520.1|3748847_3749708_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY57521.1|3749971_3750673_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY57522.1|3750842_3751238_+	RidA family protein	NA	NA	NA	NA	NA
AZY57523.1|3751347_3752298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57524.1|3752308_3752950_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57525.1|3753116_3753359_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57526.1|3753457_3754408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57527.1|3754443_3754911_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY57528.1|3755144_3755522_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57529.1|3755518_3755701_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57530.1|3755704_3756691_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY57531.1|3756687_3757335_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY57532.1|3757392_3757920_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57533.1|3757953_3759141_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY57534.1|3759130_3759493_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY57535.1|3759485_3759605_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57536.1|3759605_3759806_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY57537.1|3759802_3760792_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY57538.1|3762278_3764249_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY57539.1|3764490_3764889_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57540.1|3764897_3765821_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57541.1|3766278_3767229_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57542.1|3767459_3769151_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY57543.1|3769199_3769472_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY57544.1|3769468_3769840_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY57545.1|3769935_3770070_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY57546.1|3770475_3771885_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY57547.1|3771881_3772997_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY57548.1|3773091_3775545_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY57549.1|3775663_3776455_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57550.1|3776574_3778002_+	amidase	NA	NA	NA	NA	NA
AZY58032.1|3778040_3779012_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57551.1|3779430_3780594_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY57552.1|3780681_3781527_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY57553.1|3783083_3784034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57554.1|3784588_3784963_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57555.1|3785037_3786096_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY57556.1|3786119_3787070_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57557.1|3789951_3791121_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY58033.1|3791221_3792829_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3792574:3792591	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY57558.1|3792875_3794897_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY57559.1|3794925_3795171_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY57560.1|3795184_3796375_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY57561.1|3796570_3797536_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57562.1|3797558_3798698_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY57563.1|3798909_3799872_+	immunogenic protein	NA	NA	NA	NA	NA
AZY57564.1|3799995_3802020_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY57565.1|3802216_3804460_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AZY57566.1|3804738_3805197_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57567.1|3806124_3808746_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57568.1|3808809_3811437_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY57569.1|3811588_3812653_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY57570.1|3812649_3813423_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY57571.1|3813431_3814265_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY57572.1|3814277_3815057_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY58034.1|3815091_3816564_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY57573.1|3816591_3817350_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY57574.1|3817405_3819256_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY57575.1|3819349_3819826_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY57576.1|3819842_3820763_-	bestrophin	NA	NA	NA	NA	NA
AZY57577.1|3820869_3821370_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZY57578.1|3821743_3822436_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY57579.1|3822744_3823695_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57580.1|3823691_3827465_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZY57581.1|3827801_3829691_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZY57582.1|3829702_3830596_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZY57583.1|3830621_3831497_+	thiazole synthase	NA	NA	NA	NA	NA
AZY57584.1|3831493_3832345_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY57585.1|3832406_3833087_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZY57586.1|3833090_3833450_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57587.1|3833450_3834410_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57588.1|3834430_3834919_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZY58035.1|3835200_3836217_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
>prophage 29
CP025523	Bordetella pertussis strain F569 chromosome, complete genome	4103262	4002330	4067242	4103262	transposase	Planktothrix_phage(40.0%)	58	NA	NA
AZY57753.1|4002330_4002816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57754.1|4003034_4004015_+	protein BugT	NA	NA	NA	NA	NA
AZY57755.1|4004281_4005091_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY57756.1|4005130_4005811_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY57757.1|4005804_4006263_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY57758.1|4006274_4006637_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY57759.1|4006719_4007403_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY57760.1|4007458_4007767_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY57761.1|4007785_4008100_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY57762.1|4008096_4010571_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY57763.1|4010578_4011970_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY57764.1|4011966_4012152_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY57765.1|4012130_4012832_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY57766.1|4012828_4013650_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY58044.1|4013630_4014755_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY57767.1|4014747_4015767_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY57768.1|4015972_4017007_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY58045.1|4017107_4017899_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY57769.1|4017981_4018356_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY57770.1|4018333_4019743_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY57771.1|4019735_4021118_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY57772.1|4021452_4023057_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY57773.1|4023092_4024106_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY57774.1|4024116_4025043_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY57775.1|4025433_4026384_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57776.1|4026553_4027780_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY57777.1|4027979_4028846_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY57778.1|4028838_4029801_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY57779.1|4029901_4030852_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57780.1|4030950_4031901_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57781.1|4031999_4032950_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY57782.1|4032946_4034440_-	RND transporter	NA	NA	NA	NA	NA
AZY57783.1|4034436_4037544_-	multidrug transporter subunit MdtC	NA	NA	NA	NA	NA
AZY57784.1|4037540_4040609_-	multidrug transporter subunit MdtB	NA	NA	NA	NA	NA
AZY57785.1|4040605_4041856_-	multidrug transporter subunit MdtA	NA	NA	NA	NA	NA
AZY57786.1|4042036_4042798_-	cell division protein ZapD	NA	NA	NA	NA	NA
AZY57787.1|4042830_4043481_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
AZY57788.1|4043483_4044323_-	prepilin peptidase	NA	NA	NA	NA	NA
AZY57789.1|4044563_4045307_+	hypothetical protein	NA	NA	NA	NA	NA
AZY57790.1|4045389_4045737_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
AZY57791.1|4045834_4046677_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
AZY57792.1|4046721_4047609_-	segregation/condensation protein A	NA	NA	NA	NA	NA
AZY57793.1|4047635_4047824_-	DUF3460 domain-containing protein	NA	NA	NA	NA	NA
AZY57794.1|4047921_4049379_+	MFS transporter	NA	NA	NA	NA	NA
AZY57795.1|4049365_4050892_+	glycerol kinase	NA	NA	NA	NA	NA
AZY57796.1|4050910_4051378_-	hypothetical protein	NA	NA	NA	NA	NA
AZY57797.1|4051377_4052400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY57798.1|4052520_4053261_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
AZY57799.1|4053315_4054416_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY57800.1|4054417_4055608_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY57801.1|4055727_4056744_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
AZY57802.1|4057062_4057734_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
AZY57803.1|4057730_4058639_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY57804.1|4058850_4059498_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
AZY57805.1|4063349_4064426_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
AZY57806.1|4064436_4065246_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY57807.1|4065335_4066109_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY57808.1|4066291_4067242_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
