The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	0	122073	4121896	protease,transposase,tRNA	Planktothrix_phage(16.67%)	110	NA	NA
AZY76083.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
AZY76084.1|1916_2609_+	ribosomal RNA small subunit methyltransferase G	NA	NA	NA	NA	NA
AZY76085.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
AZY76086.1|3409_4171_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY76087.1|4214_5132_+	chromosome partitioning protein ParB	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
AZY76088.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
AZY76089.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
AZY76090.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
AZY76091.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
AZY76092.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
AZY76093.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
AZY76094.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
AZY76095.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
AZY76096.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
AZY79475.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
AZY76097.1|20771_21947_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76098.1|24352_25459_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
AZY76099.1|26470_27286_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY76100.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76101.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
AZY76102.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76103.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
AZY76104.1|30364_30862_-	dehydratase	NA	NA	NA	NA	NA
AZY79476.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76105.1|32163_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY76106.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY76107.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76108.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
AZY76109.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
AZY76110.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY76111.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
AZY76112.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY76113.1|41318_42212_+	M48 family peptidase	NA	NA	NA	NA	NA
AZY76114.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
AZY76115.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
AZY76116.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
AZY76117.1|43663_44614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76118.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76119.1|45720_45957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY76120.1|46084_46978_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76121.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
AZY76122.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
AZY76123.1|50141_51092_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76124.1|51134_52391_+	MFS transporter	NA	NA	NA	NA	NA
AZY76125.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
AZY76126.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
AZY76127.1|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY76128.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY76129.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY76130.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76131.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
AZY76132.1|60474_60894_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY76133.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76134.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76135.1|63473_64055_-|protease	protease	protease	NA	NA	NA	NA
AZY76136.1|64067_64385_-	ferredoxin	NA	NA	NA	NA	NA
AZY76137.1|64488_65547_-	oxidoreductase	NA	NA	NA	NA	NA
AZY76138.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY76139.1|67482_68664_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76140.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76141.1|70129_70444_+|transposase	transposase	transposase	NA	NA	NA	NA
AZY76142.1|71636_73544_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
AZY76143.1|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY76144.1|74357_74939_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
AZY76145.1|75027_75279_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79477.1|75280_76030_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76146.1|76228_77638_+	signal recognition particle protein	NA	NA	NA	NA	NA
AZY76147.1|77634_78585_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79478.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76148.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
AZY76149.1|82822_83527_-	DUF2837 domain-containing protein	NA	NA	NA	NA	NA
AZY76150.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
AZY76151.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
AZY76152.1|85481_86714_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	NA	NA	NA	NA
AZY76153.1|86731_87991_-	glycosyltransferase WbuB	NA	NA	NA	NA	NA
AZY76154.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
AZY76155.1|89110_90211_-	aminotransferase DegT	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
AZY76156.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY76157.1|90793_91846_-	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
AZY76158.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
AZY76159.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
AZY76160.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76161.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
AZY76162.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
AZY76163.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY76164.1|97339_98179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
AZY76165.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76166.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY76167.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
AZY76168.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
AZY76169.1|102808_103084_+	DUF493 domain-containing protein	NA	NA	NA	NA	NA
AZY76170.1|103091_103754_+	octanoyltransferase	NA	NA	NA	NA	NA
AZY76171.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
AZY76172.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
AZY76173.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
AZY76174.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
AZY76175.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76176.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY76177.1|110552_111182_-	thiol:disulfide interchange protein DsbA	NA	NA	NA	NA	NA
AZY76178.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY76179.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY79479.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
AZY76180.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79480.1|114944_115961_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY76181.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY76182.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY76183.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY76184.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
AZY76185.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
AZY76186.1|121122_122073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	164894	225405	4121896	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
AZY76217.1|164894_165845_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76218.1|167288_168191_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76219.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
AZY76220.1|169128_170511_+	RNA helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
AZY76221.1|170544_171174_+	threonine transporter RhtB	NA	NA	NA	NA	NA
AZY76222.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
AZY76223.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79486.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
AZY76224.1|174302_175253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76225.1|176368_176896_+	lipoprotein	NA	NA	NA	NA	NA
AZY76226.1|176987_177803_+	lipoprotein	NA	NA	NA	NA	NA
AZY76227.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
AZY76228.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
AZY76229.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76230.1|181334_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
AZY76231.1|182426_184331_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
AZY76232.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
AZY76233.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
AZY76234.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
AZY76235.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
AZY79487.1|189531_189978_-	N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
AZY76236.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76237.1|190756_193027_+	lysine decarboxylase	NA	NA	NA	NA	NA
AZY76238.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY76239.1|194406_195357_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76240.1|195402_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
AZY76241.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY76242.1|197379_198480_+	aminomethyltransferase	NA	NA	NA	NA	NA
AZY76243.1|198561_198936_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
AZY76244.1|198995_201860_+	glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
AZY76245.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76246.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
AZY76247.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76248.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76249.1|206743_207067_+	PsiF repeat family protein	NA	NA	NA	NA	NA
AZY76250.1|207171_208221_-	cyclase	NA	NA	NA	NA	NA
AZY76251.1|208217_209042_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
AZY76252.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
AZY76253.1|209364_209640_-	muconolactone delta-isomerase	NA	NA	NA	NA	NA
AZY76254.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY76255.1|210340_211027_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY79488.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76256.1|212058_212784_-	short-chain dehydrogenase	NA	NA	NA	NA	NA
AZY76257.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
AZY76258.1|214276_215209_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY76259.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
AZY76260.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
AZY76261.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
AZY76262.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
AZY76263.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
AZY76264.1|224454_225405_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	233337	286925	4121896	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
AZY76272.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76273.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76274.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76275.1|236370_237168_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY76276.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
AZY76277.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76278.1|240336_241380_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY76279.1|241550_243653_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76280.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76281.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
AZY76282.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
AZY76283.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
AZY76284.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
AZY76285.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
AZY76286.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
AZY76287.1|251624_253514_-	DNA mismatch repair protein MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
AZY76288.1|253600_254239_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79489.1|254381_255626_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.1e-17
AZY76289.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
AZY76290.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AZY76291.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
AZY76292.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
AZY76293.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76294.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY76295.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
AZY76296.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76297.1|265574_266525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76298.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76299.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY76300.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
AZY76301.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
AZY76302.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
AZY76303.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
AZY76304.1|274101_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
AZY76305.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY76306.1|277141_278092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76307.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76308.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
AZY76309.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76310.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
AZY76311.1|279656_280268_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY76312.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
AZY76313.1|281300_282683_-	cytochrome b	NA	NA	NA	NA	NA
AZY76314.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
AZY76315.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
AZY76316.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
AZY79490.1|284841_285978_+	PDZ domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
AZY76317.1|285974_286925_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	390858	448367	4121896	transposase	Orpheovirus(14.29%)	50	NA	NA
AZY76416.1|390858_391809_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76417.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
AZY76418.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
AZY76419.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
AZY76420.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76421.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
AZY76422.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76423.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79496.1|400019_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
AZY76424.1|401158_402142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76425.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76426.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY76427.1|403585_404827_-	CoA transferase	NA	NA	NA	NA	NA
AZY76428.1|404931_406638_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY76429.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76430.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
AZY76431.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76432.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79497.1|411331_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76433.1|412387_413338_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76434.1|413426_414341_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY76435.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
AZY76436.1|415086_416010_+	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
AZY76437.1|416015_416471_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76438.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
AZY79498.1|417490_417799_+	GtrA family protein	NA	NA	NA	NA	NA
AZY76439.1|417758_419378_-	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
AZY76440.1|419374_420433_-	glycosyltransferase	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
AZY76441.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY76442.1|421149_422127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76443.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
AZY76444.1|423524_425036_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79499.1|425051_426365_-	short-chain fatty acids transporter	NA	NA	NA	NA	NA
AZY76445.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76446.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
AZY76447.1|430323_431274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76448.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
AZY76449.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
AZY76450.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
AZY76451.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY76452.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
AZY76453.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
AZY76454.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
AZY76455.1|439211_439997_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY76456.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76457.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76458.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY76459.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY76460.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY76461.1|447416_448367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	620803	721267	4121896	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
AZY76613.1|620803_621754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76614.1|622452_622836_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76615.1|622893_623496_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
AZY79505.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
AZY76616.1|624048_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76617.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AZY76618.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
AZY76619.1|627089_628139_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA	NA
AZY76620.1|628286_628865_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA	NA
AZY76621.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
AZY76622.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
AZY76623.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76624.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
AZY76625.1|636792_637743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76626.1|637841_638642_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76627.1|638703_639087_+	thioredoxin	NA	NA	NA	NA	NA
AZY76628.1|639098_640532_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
AZY76629.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
AZY79506.1|641070_641739_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY76630.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
AZY76631.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
AZY76632.1|643204_643627_+	DUF4440 domain-containing protein	NA	NA	NA	NA	NA
AZY76633.1|643643_644744_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY76634.1|644840_646358_-	peptidase	NA	NA	NA	NA	NA
AZY76635.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
AZY76636.1|647294_648176_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
AZY76637.1|648257_649352_-	porin	NA	NA	NA	NA	NA
AZY76638.1|649645_650596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79507.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76639.1|651695_652055_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76640.1|652436_653474_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76641.1|653790_655131_+	peptidase M24 family protein	NA	NA	NA	NA	NA
AZY76642.1|655140_655593_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76643.1|655689_656871_+	monooxygenase	NA	NA	NA	NA	NA
AZY76644.1|656930_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
AZY76645.1|658002_658242_+	Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY76646.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
AZY76647.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
AZY76648.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
AZY76649.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
AZY76650.1|662105_663074_-	threonine/serine dehydratase	NA	NA	NA	NA	NA
AZY76651.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
AZY76652.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
AZY76653.1|666171_667122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76654.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
AZY76655.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
AZY76656.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
AZY76657.1|669839_670595_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79508.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY76658.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY76659.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
AZY76660.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
AZY76661.1|673908_675651_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
AZY76662.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
AZY76663.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY76664.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76665.1|678341_679292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76666.1|679543_679756_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79509.1|679821_680433_-	LexA family transcriptional repressor	NA	NA	NA	NA	NA
AZY76667.1|680912_681233_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76668.1|681225_681924_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76669.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76670.1|682177_683128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79510.1|683803_684253_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
AZY76671.1|684239_685517_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
AZY76672.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
AZY79511.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
AZY76673.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
AZY76674.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
AZY76675.1|689423_690374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76676.1|690391_691039_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
AZY76677.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76678.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
AZY76679.1|691846_692047_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76680.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
AZY76681.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
AZY76682.1|692833_693256_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76683.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
AZY76684.1|694018_694537_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
AZY76685.1|694546_694876_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
AZY76686.1|694893_695184_+	hypothetical protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
AZY76687.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
AZY76688.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76689.1|698258_698792_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
AZY76690.1|698788_699178_+	hypothetical protein	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
AZY76691.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
AZY76692.1|703131_703548_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76693.1|703766_704030_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
AZY76694.1|704029_704842_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76695.1|704846_705089_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76696.1|705067_705619_+	lysozyme	NA	NA	NA	NA	NA
AZY76697.1|705600_706134_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AZY76698.1|706130_706412_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76699.1|706754_706955_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76700.1|706961_707633_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
AZY76701.1|707988_708675_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY76702.1|708655_709228_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
AZY76703.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
AZY76704.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
AZY76705.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
AZY76706.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
AZY76707.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
AZY76708.1|713673_714990_+	protein TolB	NA	NA	NA	NA	NA
AZY76709.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
AZY76710.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
AZY76711.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY76712.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
AZY76713.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76714.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76715.1|720111_720330_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76716.1|720316_721267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	748192	821354	4121896	transposase	Streptococcus_phage(16.67%)	58	NA	NA
AZY76737.1|748192_749143_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76738.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
AZY76739.1|750928_752194_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
AZY76740.1|752351_753302_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76741.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
AZY79513.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
AZY76742.1|756715_757687_-	FecR family protein	NA	NA	NA	NA	NA
AZY76743.1|757818_758343_+	RNA polymerase subunit sigma	NA	NA	NA	NA	NA
AZY76744.1|758302_759253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76745.1|759474_761670_-	DNA methylase	NA	NA	NA	NA	NA
AZY76746.1|761742_762150_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY76747.1|762272_763223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76748.1|763338_763782_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY76749.1|763844_764639_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY76750.1|764804_765941_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
AZY76751.1|766011_767145_-	GTPase ObgE	NA	NA	NA	NA	NA
AZY76752.1|767294_767555_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
AZY76753.1|767588_767900_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
AZY76754.1|768324_769473_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
AZY76755.1|769587_770553_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
AZY76756.1|770821_771688_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76757.1|771818_773867_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY76758.1|773884_775882_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY76759.1|775916_777254_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
AZY76760.1|777516_779370_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76761.1|779424_780906_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY76762.1|780921_781509_-	cyclolysin-activating lysine-acyltransferase CyaC	NA	NA	NA	NA	NA
AZY79514.1|781591_781771_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76763.1|781957_787078_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
AZY76764.1|787155_789294_+	cyclolysin secretion/processing ATP-binding protein CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
AZY76765.1|789290_790613_+	protein CyaD	NA	NA	NA	NA	NA
AZY76766.1|790614_792039_+	protein CyaE	NA	NA	NA	NA	NA
AZY76767.1|792129_793038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76768.1|793102_794017_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY76769.1|794854_795538_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY76770.1|795554_796298_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
AZY76771.1|796327_797188_+	aminotransferase	NA	NA	NA	NA	NA
AZY76772.1|797195_797762_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76773.1|797850_798807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76774.1|798851_799604_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY76775.1|799600_801346_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA	NA
AZY76776.1|801430_802165_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76777.1|802481_803504_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
AZY76778.1|803519_804242_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76779.1|804386_805394_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
AZY76780.1|805434_806967_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA	NA
AZY76781.1|806963_808082_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
AZY76782.1|808078_808861_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY76783.1|808872_809736_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
AZY79515.1|809754_810852_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76784.1|810920_811847_-	VOC family protein	NA	NA	NA	NA	NA
AZY76785.1|811881_813576_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
AZY76786.1|813775_814711_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
AZY76787.1|814816_815767_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76788.1|815865_816522_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY76789.1|816669_819378_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
AZY76790.1|819387_820407_+	fructose 1,6-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
AZY76791.1|820403_821354_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	854101	903365	4121896	transposase,holin	Vibrio_phage(33.33%)	40	NA	NA
AZY76820.1|854101_855052_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79516.1|855024_855624_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76821.1|855625_856060_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY76822.1|856056_856491_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76823.1|856474_857278_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
AZY76824.1|857294_858110_-	DNA repair exonuclease	NA	NA	NA	NA	NA
AZY76825.1|858106_858922_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AZY76826.1|859068_859770_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76827.1|859797_861756_-|holin	choline transporter	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
AZY76828.1|861838_862789_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76829.1|863009_863678_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY76830.1|863801_864908_+	MexH family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY76831.1|864920_868034_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
AZY76832.1|868030_869524_+	RND transporter	NA	NA	NA	NA	NA
AZY76833.1|869538_870210_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY76834.1|870253_870748_-	azurin	NA	NA	NA	NA	NA
AZY76835.1|870888_871536_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY79517.1|871639_873688_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
AZY76836.1|873684_875697_+	hydantoin utilization protein B	NA	NA	NA	NA	NA
AZY76837.1|875722_877057_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY79518.1|877165_878158_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76838.1|878224_880309_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
AZY76839.1|880333_881305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76840.1|881433_882435_-	peptidase M14	NA	NA	NA	NA	NA
AZY76841.1|882468_883710_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
AZY76842.1|883790_884714_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
AZY76843.1|884791_885616_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY79519.1|885812_886829_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY76844.1|887025_888009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76845.1|889607_890996_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY76846.1|891026_892016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76847.1|892126_893359_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY76848.1|893640_894441_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76849.1|894463_896695_-|holin	high-affinity choline transporter BetT	holin	NA	NA	NA	NA
AZY76850.1|897482_897929_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
AZY76851.1|897950_898697_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
AZY76852.1|898840_899818_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
AZY76853.1|900451_901063_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
AZY76854.1|901056_902274_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
AZY76855.1|902414_903365_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	912977	977917	4121896	transposase	Bacillus_phage(18.18%)	60	NA	NA
AZY76864.1|912977_913928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76865.1|913924_915775_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
AZY76866.1|916155_916815_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
AZY76867.1|916902_917055_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76868.1|917163_917331_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76869.1|917342_918023_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
AZY76870.1|918304_919021_+	flagellar brake protein	NA	NA	NA	NA	NA
AZY76871.1|919035_920337_-	phospholipase	NA	NA	NA	NA	NA
AZY76872.1|922481_925370_+	HD domain-containing protein	NA	NA	NA	NA	NA
AZY76873.1|925593_926946_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY76874.1|926974_927496_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY76875.1|927492_928947_+	carboxylase	NA	NA	NA	NA	NA
AZY76876.1|928981_929230_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76877.1|929335_930211_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76878.1|930236_931292_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76879.1|931304_932096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76880.1|932128_933499_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY76881.1|934675_935626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76882.1|935678_935900_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76883.1|936059_936272_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76884.1|936391_937510_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
AZY76885.1|937606_937822_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76886.1|938015_938267_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76887.1|938379_939330_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76888.1|939326_939710_-	ferredoxin	NA	NA	NA	NA	NA
AZY76889.1|939764_941582_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
AZY79521.1|941728_942556_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
AZY76890.1|942601_943582_+	aldo/keto reductase	NA	NA	NA	NA	NA
AZY76891.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76892.1|943787_944969_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
AZY76893.1|945132_945867_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
AZY76894.1|945868_948481_-	penicillin-binding protein	NA	NA	NA	NA	NA
AZY76895.1|948616_950530_-	S9 family peptidase	NA	NA	NA	NA	NA
AZY76896.1|951145_951556_-	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY76897.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
AZY76898.1|952837_953788_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76899.1|953784_954759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY76900.1|954883_955795_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
AZY76901.1|956071_956464_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
AZY76902.1|956593_957544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76903.1|957573_957756_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
AZY76904.1|957794_958052_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76905.1|958528_959710_-	MFS transporter	NA	NA	NA	NA	NA
AZY76906.1|959925_960603_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY76907.1|960599_961373_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
AZY76908.1|961450_962032_-	OmpA family protein	NA	NA	NA	NA	NA
AZY76909.1|962402_965084_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
AZY76910.1|965083_966217_+	phosphoserine aminotransferase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
AZY76911.1|966209_967295_+	prephenate dehydratase	NA	NA	NA	NA	NA
AZY76912.1|967381_968281_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
AZY76913.1|968277_969606_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
AZY76914.1|969620_970292_+	cytidylate kinase	NA	NA	NA	NA	NA
AZY76915.1|970464_972195_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
AZY76916.1|972196_972556_+	integration host factor subunit beta	NA	NA	NA	NA	NA
AZY76917.1|972747_973062_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
AZY76918.1|973104_974325_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
AZY76919.1|974321_975263_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
AZY76920.1|975259_976249_+	ADP-L-glycero-D-mannoheptose-6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
AZY76921.1|976283_976868_+	DUF655 domain-containing protein	NA	NA	NA	NA	NA
AZY76922.1|976966_977917_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	997317	1060468	4121896	transposase	Enterococcus_phage(16.67%)	53	NA	NA
AZY76937.1|997317_998268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76938.1|998372_999422_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
AZY79523.1|999559_1000576_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY76939.1|1002084_1002657_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AZY76940.1|1002716_1003448_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
AZY79524.1|1003499_1004417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76941.1|1005224_1008404_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY76942.1|1008400_1009783_+	multidrug transporter	NA	NA	NA	NA	NA
AZY76943.1|1009852_1010104_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
AZY76944.1|1010249_1010900_-	SCO family protein	NA	NA	NA	NA	NA
AZY76945.1|1011050_1013165_-	M3 family peptidase	NA	NA	NA	NA	NA
AZY76946.1|1013240_1014092_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
AZY76947.1|1014088_1014715_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY76948.1|1014711_1016466_-	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
AZY76949.1|1016758_1019464_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
AZY76950.1|1019476_1021138_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
AZY76951.1|1021150_1022941_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
AZY76952.1|1023162_1024338_-	flagellin FliC	NA	NA	NA	NA	NA
AZY76953.1|1024380_1025331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76954.1|1025429_1026170_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
AZY76955.1|1026364_1028401_+	transketolase	NA	NA	NA	NA	NA
AZY76956.1|1028418_1029429_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
AZY76957.1|1029546_1030740_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
AZY76958.1|1030769_1031543_-	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY76959.1|1031539_1032730_-	acetate kinase	NA	NA	NA	NA	NA
AZY76960.1|1032755_1033694_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
AZY79525.1|1033690_1036039_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
AZY76961.1|1036193_1036901_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY76962.1|1036938_1038072_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76963.1|1038348_1038897_-	damage-inducible protein DinB	NA	NA	NA	NA	NA
AZY76964.1|1038915_1039401_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY76965.1|1039578_1040517_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
AZY76966.1|1040519_1040837_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY76967.1|1040882_1041827_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76968.1|1043507_1044158_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
AZY76969.1|1044211_1044547_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76970.1|1044543_1045404_+	M23 family peptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
AZY76971.1|1045420_1045702_-	hypothetical protein	NA	NA	NA	NA	NA
AZY76972.1|1045775_1046039_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
AZY76973.1|1046282_1047233_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY76974.1|1047531_1048269_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
AZY76975.1|1048704_1049028_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA	NA
AZY76976.1|1049062_1049623_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
AZY76977.1|1049743_1050619_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
AZY76978.1|1050631_1051579_+	motility protein MotB	NA	NA	NA	NA	NA
AZY76979.1|1051680_1051974_+	response regulator	NA	NA	NA	NA	NA
AZY76980.1|1052000_1054058_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
AZY76981.1|1054072_1054573_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
AZY76982.1|1054646_1056353_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
AZY76983.1|1057216_1058269_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
AZY76984.1|1058321_1058711_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
AZY76985.1|1058719_1059352_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
AZY79526.1|1059451_1060468_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 10
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	1066452	1134614	4121896	transposase,holin,tRNA	uncultured_Mediterranean_phage(25.0%)	55	NA	NA
AZY76990.1|1066452_1067880_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
AZY79528.1|1068817_1069834_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY76991.1|1070166_1071102_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
AZY76992.1|1071151_1073032_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
AZY76993.1|1073098_1073443_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
AZY76994.1|1073587_1074724_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
AZY76995.1|1074720_1075794_-|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	tRNA	NA	NA	NA	NA
AZY76996.1|1075951_1077388_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
AZY79529.1|1077478_1078120_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY79530.1|1078455_1079472_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY76997.1|1079804_1082552_+	pertactin autotransporter	NA	NA	NA	NA	NA
AZY79531.1|1082618_1084040_-	siroheme synthase	NA	NA	NA	NA	NA
AZY76998.1|1084303_1085020_+	hypothetical protein	NA	NA	NA	NA	NA
AZY76999.1|1085104_1085422_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
AZY77000.1|1085462_1085876_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY77001.1|1085877_1086237_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77002.1|1086279_1087824_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
AZY77003.1|1087907_1088738_+	transglycosylase	NA	NA	NA	NA	NA
AZY77004.1|1088772_1089927_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
AZY77005.1|1089969_1090842_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77006.1|1090958_1093247_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
AZY77007.1|1094453_1094918_+	barstar family protein 2	NA	NA	NA	NA	NA
AZY77008.1|1094944_1095895_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79532.1|1096262_1097039_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
AZY77009.1|1097083_1097941_-	phosphate ABC transporter, permease protein PstA	NA	NA	NA	NA	NA
AZY77010.1|1097962_1098979_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
AZY77011.1|1099113_1100154_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
AZY77012.1|1100348_1102430_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
AZY77013.1|1102665_1104159_+	exopolyphosphatase	NA	NA	NA	NA	NA
AZY77014.1|1104389_1105184_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY77015.1|1105404_1106763_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
AZY77016.1|1106759_1107602_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
AZY77017.1|1107620_1109507_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
AZY77018.1|1109744_1110377_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA	NA
AZY77019.1|1110395_1110998_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77020.1|1111149_1112100_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77021.1|1112902_1113703_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77022.1|1113746_1114733_-	homoserine kinase	NA	NA	NA	NA	NA
AZY77023.1|1114872_1115886_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AZY77024.1|1115882_1116833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77025.1|1116945_1117404_-	CBS domain-containing protein	NA	NA	NA	NA	NA
AZY77026.1|1117440_1118754_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77027.1|1118771_1119143_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
AZY77028.1|1119139_1120603_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
AZY77029.1|1120695_1121472_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY77030.1|1121453_1124333_-	diguanylate phosphodiesterase	NA	NA	NA	NA	NA
AZY77031.1|1124515_1125466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77032.1|1125633_1126458_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
AZY77033.1|1126457_1127336_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY77034.1|1128240_1129356_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77035.1|1129363_1130179_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
AZY77036.1|1130175_1132041_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
AZY77037.1|1132119_1132752_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77038.1|1132748_1133051_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77039.1|1133093_1134614_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	1316904	1382333	4121896	transposase	Planktothrix_phage(33.33%)	55	NA	NA
AZY77181.1|1316904_1317855_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77182.1|1318623_1319262_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY79543.1|1320151_1320598_+	glutamate racemase	NA	NA	NA	NA	NA
AZY77183.1|1320679_1321381_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
AZY77184.1|1321381_1322149_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
AZY77185.1|1322145_1323384_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
AZY77186.1|1323383_1324310_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
AZY77187.1|1324412_1325528_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77188.1|1325543_1326494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77189.1|1326847_1327429_-	hypothetical protein	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
AZY77190.1|1327425_1328259_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
AZY79544.1|1328469_1329783_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
AZY77191.1|1329959_1330841_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
AZY77192.1|1330860_1331712_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
AZY77193.1|1331764_1332853_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
AZY77194.1|1332963_1334091_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79545.1|1334325_1334937_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY77195.1|1335035_1335986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77196.1|1336207_1336585_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
AZY79546.1|1336732_1337230_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
AZY77197.1|1337226_1337754_+	RES domain-containing protein	NA	NA	NA	NA	NA
AZY77198.1|1337887_1338703_+	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77199.1|1338715_1339897_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY77200.1|1339944_1340838_-	phosphatidylserine decarboxylase proenzyme	NA	NA	NA	NA	NA
AZY79547.1|1340964_1341435_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77201.1|1341560_1342388_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
AZY77202.1|1342416_1343193_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
AZY77203.1|1343189_1343483_-	biotin--protein ligase	NA	NA	NA	NA	NA
AZY77204.1|1343479_1343944_-	N-acetyltransferase	NA	NA	NA	NA	NA
AZY77205.1|1343955_1344741_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
AZY77206.1|1344766_1345267_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
AZY77207.1|1345349_1346528_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
AZY77208.1|1348155_1348491_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
AZY77209.1|1348678_1350127_+	CoA transferase	NA	NA	NA	NA	NA
AZY77210.1|1350184_1350529_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
AZY77211.1|1350635_1351175_-	peroxiredoxin	NA	NA	NA	NA	NA
AZY77212.1|1351267_1352218_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77213.1|1352316_1353267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77214.1|1353253_1353736_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77215.1|1354005_1354437_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77216.1|1354618_1355023_-	DoxX family protein	NA	NA	NA	NA	NA
AZY77217.1|1356259_1356583_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77218.1|1356585_1357473_-	aldo/keto reductase	NA	NA	NA	NA	NA
AZY77219.1|1357505_1357931_-	universal stress protein	NA	NA	NA	NA	NA
AZY77220.1|1358002_1358356_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77221.1|1358595_1359102_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77222.1|1359140_1360472_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
AZY77223.1|1360531_1361347_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
AZY77224.1|1361343_1362198_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
AZY79548.1|1365260_1367804_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
AZY77225.1|1369170_1370925_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
AZY77226.1|1370921_1373042_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA	NA
AZY77227.1|1373046_1375242_-	1,4-alpha-glucan-branching protein	NA	NA	NA	NA	NA
AZY79549.1|1375238_1378580_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
AZY77228.1|1381382_1382333_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	1446931	1502419	4121896	protease,transposase	Mollivirus(16.67%)	56	NA	NA
AZY77278.1|1446931_1447882_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77279.1|1449083_1449530_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
AZY77280.1|1449522_1450998_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
AZY77281.1|1450994_1451750_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
AZY77282.1|1451742_1452753_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
AZY77283.1|1452742_1454419_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
AZY77284.1|1454731_1455064_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
AZY77285.1|1455077_1455473_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77286.1|1455482_1455809_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
AZY77287.1|1455805_1456132_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY77288.1|1456058_1457081_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
AZY77289.1|1457077_1457458_-	flagellar protein FliT	NA	NA	NA	NA	NA
AZY77290.1|1457475_1457904_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
AZY77291.1|1457911_1459285_-	flagellar hook protein FliD	NA	NA	NA	NA	NA
AZY79555.1|1459425_1459803_-	flagellar protein	NA	NA	NA	NA	NA
AZY77292.1|1460065_1461373_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
AZY77293.1|1461433_1462264_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
AZY77294.1|1462260_1462749_+	colicin V synthesis protein	NA	NA	NA	NA	NA
AZY77295.1|1462790_1464311_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
AZY79556.1|1464354_1464831_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY77296.1|1465634_1468232_-	bifunctional uridylyltransferase/uridylyl-removing protein	NA	NA	NA	NA	NA
AZY77297.1|1468261_1469083_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
AZY77298.1|1469809_1470559_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
AZY77299.1|1470691_1471621_+	elongation factor Ts	NA	NA	NA	NA	NA
AZY77300.1|1471718_1472435_+	UMP kinase	NA	NA	NA	NA	NA
AZY77301.1|1472449_1473010_+	ribosome-recycling factor	NA	NA	NA	NA	NA
AZY77302.1|1473047_1473941_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
AZY77303.1|1473960_1474818_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
AZY77304.1|1474814_1476014_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
AZY77305.1|1476053_1477388_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
AZY77306.1|1477440_1479777_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
AZY79557.1|1479902_1480466_+	outer membrane protein chaperone	NA	NA	NA	NA	NA
AZY77307.1|1480474_1481566_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
AZY77308.1|1481637_1482093_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
AZY77309.1|1482093_1482888_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
AZY77310.1|1482884_1484066_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
AZY77311.1|1484052_1484658_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
AZY77312.1|1484654_1485428_+	RNA methyltransferase	NA	NA	NA	NA	NA
AZY77313.1|1485439_1486267_-	phosphoenolpyruvate synthase regulatory protein	NA	NA	NA	NA	NA
AZY77314.1|1486428_1488792_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
AZY77315.1|1488859_1489579_-	GMP synthase	NA	NA	NA	NA	NA
AZY77316.1|1489702_1490128_+	NfeD-like family protein 1	NA	NA	NA	NA	NA
AZY77317.1|1490162_1491113_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77318.1|1491230_1492157_+	paraslipin	NA	NA	NA	NA	NA
AZY77319.1|1492222_1493380_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
AZY77320.1|1493360_1493828_-	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
AZY77321.1|1493975_1494926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77322.1|1494942_1495377_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
AZY77323.1|1495366_1495717_+	RnfH family protein	NA	NA	NA	NA	NA
AZY77324.1|1495913_1497068_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY77325.1|1497064_1498237_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY77326.1|1498284_1499178_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
AZY77327.1|1499223_1499661_+	PaaI family thioesterase	NA	NA	NA	NA	NA
AZY77328.1|1499720_1500410_+	VIT family protein	NA	NA	NA	NA	NA
AZY77329.1|1500419_1501370_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77330.1|1501468_1502419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	1541742	1599824	4121896	protease,transposase,tRNA	Planktothrix_phage(15.38%)	60	NA	NA
AZY77363.1|1541742_1542555_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
AZY77364.1|1542699_1543794_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77365.1|1544005_1544635_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77366.1|1544637_1546305_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY77367.1|1546319_1546976_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
AZY77368.1|1547455_1548406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77369.1|1548432_1549206_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
AZY77370.1|1549217_1550459_+	MFS transporter	NA	NA	NA	NA	NA
AZY77371.1|1552240_1553191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77372.1|1553222_1554320_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
AZY77373.1|1554316_1555267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77374.1|1555688_1556081_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77375.1|1556086_1556863_-	DNA-binding response regulator	NA	NA	NA	NA	NA
AZY77376.1|1557250_1559200_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
AZY77377.1|1559220_1559766_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
AZY77378.1|1559902_1560859_+	glutathione synthetase	NA	NA	NA	NA	NA
AZY77379.1|1560869_1561268_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
AZY77380.1|1561383_1561653_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
AZY77381.1|1561774_1563469_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
AZY77382.1|1563633_1563858_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77383.1|1564456_1565407_+	ornithine cyclodeaminase	NA	NA	NA	NA	NA
AZY77384.1|1565448_1566609_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77385.1|1566769_1567690_+	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
AZY77386.1|1567702_1568344_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
AZY77387.1|1568340_1569012_+	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
AZY77388.1|1569008_1569779_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
AZY77389.1|1569877_1570828_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77390.1|1571044_1571449_-	GFA family protein	NA	NA	NA	NA	NA
AZY77391.1|1571522_1572713_-	formate dehydrogenase	NA	NA	NA	NA	NA
AZY77392.1|1572746_1573073_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
AZY77393.1|1573095_1573611_-	transporter	NA	NA	NA	NA	NA
AZY77394.1|1573669_1574896_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	58.8	5.2e-134
AZY77395.1|1575073_1576204_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
AZY77396.1|1576438_1577020_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AZY77397.1|1577156_1578221_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
AZY77398.1|1578305_1578752_-	GFA family protein	NA	NA	NA	NA	NA
AZY77399.1|1578976_1579858_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.8e-51
AZY77400.1|1579912_1580164_+	type II toxin-antitoxin system MqsR family toxin	NA	NA	NA	NA	NA
AZY77401.1|1580166_1580568_+	type II toxin-antitoxin system MqsA family antitoxin	NA	NA	NA	NA	NA
AZY77402.1|1580587_1580824_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77403.1|1580831_1581311_+	disulfide bond formation protein B	NA	NA	NA	NA	NA
AZY77404.1|1581496_1581976_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	6.5e-16
AZY77405.1|1581978_1583169_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AZY77406.1|1583173_1584226_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	4.8e-35
AZY77407.1|1584362_1585385_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	40.7	1.6e-67
AZY77408.1|1585476_1586313_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77409.1|1586505_1587411_+	agmatinase	NA	NA	NA	NA	NA
AZY77410.1|1587437_1588229_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77411.1|1588251_1588944_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY77412.1|1588965_1589718_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	2.8e-29
AZY77413.1|1589846_1591406_+	acetolactate synthase large subunit	NA	NA	NA	NA	NA
AZY77414.1|1591437_1591983_+	acyl dehydratase	NA	NA	NA	NA	NA
AZY77415.1|1592120_1593377_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY77416.1|1593393_1595088_-	thiamine pyrophosphate-binding protein	NA	E5ERI2	Ostreococcus_lucimarinus_virus	24.5	3.8e-26
AZY77417.1|1595245_1596133_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	28.7	3.4e-18
AZY77418.1|1596170_1597103_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	2.3e-25
AZY79559.1|1597116_1597605_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
AZY77419.1|1597722_1598301_+|protease	protease	protease	NA	NA	NA	NA
AZY77420.1|1598373_1598775_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
AZY77421.1|1598873_1599824_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	1655028	1726182	4121896	transposase	Ectocarpus_siliculosus_virus(10.0%)	54	NA	NA
AZY77468.1|1655028_1655979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77469.1|1656000_1657221_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
AZY77470.1|1657406_1658819_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
AZY77471.1|1658882_1659950_+	PAS domain-containing sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
AZY77472.1|1659946_1661437_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
AZY79562.1|1661446_1662391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77473.1|1662550_1663249_+	pirin family protein	NA	NA	NA	NA	NA
AZY77474.1|1663326_1664232_+	pirin family protein	NA	NA	NA	NA	NA
AZY77475.1|1664251_1665202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77476.1|1665300_1666095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
AZY77477.1|1666099_1667770_-	iron ABC transporter permease	NA	NA	NA	NA	NA
AZY77478.1|1667893_1668943_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77479.1|1669264_1670041_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
AZY77480.1|1670105_1671008_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77481.1|1672301_1673105_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
AZY77482.1|1675798_1676185_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
AZY77483.1|1676200_1678291_+	DNA helicase RecG	NA	NA	NA	NA	NA
AZY77484.1|1678342_1679296_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
AZY79563.1|1679310_1680198_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77485.1|1680335_1681862_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA	NA
AZY79564.1|1681960_1682461_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
AZY77486.1|1682784_1684740_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY77487.1|1684907_1686992_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77488.1|1687018_1687804_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
AZY77489.1|1688659_1689430_+	polyhydroxyalkanoate biosynthesis repressor PhaR	NA	NA	NA	NA	NA
AZY77490.1|1689429_1690170_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY77491.1|1690211_1691381_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
AZY77492.1|1691412_1693497_+	Vi polysaccharide biosynthesis protein TviE	NA	NA	NA	NA	NA
AZY77493.1|1693493_1694384_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
AZY77494.1|1694380_1695478_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY77495.1|1695500_1696790_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
AZY77496.1|1696801_1697827_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
AZY77497.1|1697823_1699881_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
AZY77498.1|1699894_1701070_+	capsule biosynthesis protein CapA	NA	NA	NA	NA	NA
AZY77499.1|1701151_1702102_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77500.1|1702160_1702934_+	oxidoreductase	NA	NA	NA	NA	NA
AZY77501.1|1702926_1704483_+	LTA synthase family protein	NA	NA	NA	NA	NA
AZY77502.1|1704479_1705430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77503.1|1706756_1707359_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77504.1|1707598_1708300_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY77505.1|1708293_1709076_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
AZY77506.1|1709260_1710211_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77507.1|1710309_1711047_-	hypothetical protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
AZY77508.1|1711236_1711995_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY77509.1|1712041_1713031_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY77510.1|1713208_1714177_-	transporter	NA	NA	NA	NA	NA
AZY77511.1|1715716_1716685_+	AAA family ATPase	NA	NA	NA	NA	NA
AZY77512.1|1716693_1717635_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
AZY77513.1|1718108_1719119_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79565.1|1719109_1720624_+	VWA domain-containing protein	NA	NA	NA	NA	NA
AZY77514.1|1720620_1721967_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79566.1|1721969_1723004_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
AZY77515.1|1723053_1724679_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
AZY77516.1|1725231_1726182_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	1746973	1808321	4121896	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
AZY77531.1|1746973_1747924_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79571.1|1748217_1748940_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
AZY77532.1|1749378_1750566_-	MFS transporter	NA	NA	NA	NA	NA
AZY77533.1|1750569_1750950_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77534.1|1752669_1753641_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY77535.1|1753654_1754368_+	NAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY77536.1|1754372_1755290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77537.1|1755396_1755693_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77538.1|1755791_1756742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77539.1|1757900_1760834_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
AZY77540.1|1760833_1761178_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
AZY77541.1|1761174_1762803_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
AZY77542.1|1762799_1763279_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
AZY77543.1|1763275_1763560_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
AZY77544.1|1763556_1763883_+	cation:proton antiporter	NA	NA	NA	NA	NA
AZY77545.1|1764038_1764989_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77546.1|1765032_1765575_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77547.1|1765672_1766521_+	hydrolase	NA	NA	NA	NA	NA
AZY77548.1|1766513_1767020_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
AZY77549.1|1767016_1768018_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
AZY77550.1|1768030_1768825_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY77551.1|1768873_1770775_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY77552.1|1770771_1771395_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77553.1|1771521_1772646_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77554.1|1772963_1774631_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
AZY77555.1|1774786_1775563_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
AZY77556.1|1775647_1776646_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77557.1|1776642_1777416_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY77558.1|1778400_1779351_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77559.1|1779374_1779839_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
AZY77560.1|1779985_1781194_+	flavohemoprotein	NA	NA	NA	NA	NA
AZY77561.1|1781204_1781675_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY77562.1|1781793_1783083_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
AZY77563.1|1785823_1786774_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77564.1|1786872_1787889_-	folate-binding protein	NA	NA	NA	NA	NA
AZY77565.1|1788055_1789102_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
AZY77566.1|1789098_1789725_+	thymidylate kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
AZY77567.1|1789721_1790774_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
AZY77568.1|1790823_1791594_+	TatD family deoxyribonuclease	NA	NA	NA	NA	NA
AZY77569.1|1791644_1792481_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77570.1|1792676_1793417_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77571.1|1793491_1794235_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77572.1|1794896_1795670_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
AZY79572.1|1796807_1798097_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
AZY77573.1|1799707_1800955_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY77574.1|1800964_1802674_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
AZY77575.1|1802670_1803609_-	CoA ester lyase	NA	NA	NA	NA	NA
AZY77576.1|1803605_1804889_-	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY77577.1|1804892_1805375_-	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY77578.1|1805375_1806362_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77579.1|1806534_1807254_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77580.1|1807370_1808321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	1989506	2059158	4121896	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
AZY77711.1|1989506_1992164_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
AZY77712.1|1992241_1993444_-	MFS transporter	NA	NA	NA	NA	NA
AZY77713.1|1993440_1993953_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79582.1|1994075_1994414_-	DNA-binding protein	NA	NA	NA	NA	NA
AZY77714.1|1994789_1995740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77715.1|1995838_1996789_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77716.1|1996952_1998848_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
AZY77717.1|1998961_1999129_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
AZY77718.1|1999192_1999429_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
AZY77719.1|1999797_2000997_-	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA	NA
AZY77720.1|2002512_2003463_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77721.1|2003914_2004916_+	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77722.1|2005088_2005946_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY77723.1|2005942_2007205_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
AZY77724.1|2007305_2007680_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY77725.1|2007728_2008940_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY77726.1|2009024_2009795_+	spermidine synthase	NA	NA	NA	NA	NA
AZY77727.1|2009908_2010673_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79583.1|2010788_2011925_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
AZY77728.1|2011921_2012728_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY77729.1|2014472_2015444_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY77730.1|2015600_2016113_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
AZY77731.1|2016271_2017246_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77732.1|2018246_2019041_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
AZY79584.1|2019066_2019873_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
AZY77733.1|2019983_2020574_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
AZY77734.1|2020584_2021763_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77735.1|2021865_2022240_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY77736.1|2022492_2023824_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
AZY77737.1|2023890_2027121_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
AZY77738.1|2028611_2029358_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
AZY77739.1|2029442_2029904_+	holo-ACP synthase	NA	NA	NA	NA	NA
AZY77740.1|2029941_2031000_+	beta-hexosaminidase	NA	NA	NA	NA	NA
AZY77741.1|2030962_2032792_+	UvrABC system protein C	NA	NA	NA	NA	NA
AZY77742.1|2032831_2033404_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
AZY77743.1|2034828_2035740_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
AZY77744.1|2035968_2037291_+	isocitrate lyase	NA	NA	NA	NA	NA
AZY77745.1|2037650_2038286_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77746.1|2038245_2039196_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77747.1|2040066_2040939_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY77748.1|2041016_2042156_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77749.1|2042505_2043771_+	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA	NA
AZY77750.1|2043776_2044304_+	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
AZY77751.1|2044308_2045127_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY77752.1|2045126_2045849_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY77753.1|2045870_2046185_+	ferredoxin	NA	NA	NA	NA	NA
AZY77754.1|2046181_2047351_+	CoA transferase	NA	NA	NA	NA	NA
AZY77755.1|2047381_2048257_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY77756.1|2048253_2049573_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY77757.1|2049645_2050842_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
AZY77758.1|2050852_2052340_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77759.1|2054934_2055834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77760.1|2055971_2056937_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY77761.1|2057035_2057986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77762.1|2058029_2058221_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77763.1|2058207_2059158_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2070654	2121738	4121896	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
AZY77775.1|2070654_2071605_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77776.1|2072748_2073045_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77777.1|2073219_2074572_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
AZY79586.1|2074714_2075731_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY79587.1|2077710_2078724_-	flavin-nucleotide-binding protein	NA	NA	NA	NA	NA
AZY77778.1|2078810_2079716_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77779.1|2079872_2080217_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77780.1|2080374_2080833_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
AZY77781.1|2080846_2083063_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
AZY77782.1|2083059_2084121_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77783.1|2084149_2085124_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY77784.1|2085075_2085894_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
AZY77785.1|2085906_2086515_-	peptidase S16	NA	NA	NA	NA	NA
AZY77786.1|2086689_2087085_+	VOC family protein	NA	NA	NA	NA	NA
AZY77787.1|2087103_2088543_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
AZY77788.1|2088571_2088919_+	GFA family protein	NA	NA	NA	NA	NA
AZY77789.1|2088937_2089888_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77790.1|2090540_2091491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77791.1|2091574_2093392_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
AZY77792.1|2093465_2094113_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77793.1|2094125_2095055_-	ZIP family metal transporter	NA	NA	NA	NA	NA
AZY77794.1|2095224_2095689_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77795.1|2095936_2096617_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77796.1|2096665_2098357_+	sodium-independent anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
AZY77797.1|2098372_2098924_-	ATPase	NA	NA	NA	NA	NA
AZY77798.1|2098920_2099292_-	transcriptional regulator	NA	NA	NA	NA	NA
AZY77799.1|2099404_2100241_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY77800.1|2100251_2100776_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
AZY77801.1|2100873_2101053_+	DUF3008 domain-containing protein	NA	NA	NA	NA	NA
AZY77802.1|2101182_2102214_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY77803.1|2102287_2102644_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
AZY79588.1|2102633_2103509_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
AZY77804.1|2103607_2104492_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77805.1|2104513_2105809_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AZY77806.1|2106757_2107408_+	flavodoxin family protein	NA	NA	NA	NA	NA
AZY79589.1|2107495_2109016_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
AZY77807.1|2109273_2111139_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
AZY77808.1|2112184_2113135_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77809.1|2114107_2114467_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
AZY77810.1|2114454_2115891_-	dethiobiotin synthase	NA	NA	NA	NA	NA
AZY77811.1|2115887_2116541_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY77812.1|2116537_2117737_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
AZY77813.1|2117834_2119109_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
AZY77814.1|2119105_2120056_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77815.1|2120787_2121738_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2132309	2173000	4121896	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
AZY77828.1|2132309_2133260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77829.1|2133358_2134309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77830.1|2134268_2134682_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
AZY77831.1|2134966_2135266_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79591.1|2135675_2137844_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
AZY77832.1|2138643_2140674_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
AZY77833.1|2140693_2140906_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
AZY77834.1|2141183_2141723_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
AZY77835.1|2141836_2143144_-	adenylosuccinate synthetase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
AZY77836.1|2143208_2144366_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
AZY77837.1|2144549_2145449_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
AZY77838.1|2145467_2146772_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
AZY77839.1|2146737_2147844_-	GTPase HflX	NA	NA	NA	NA	NA
AZY77840.1|2147931_2148168_-	RNA-binding protein Hfq	NA	NA	NA	NA	NA
AZY77841.1|2148306_2149377_-	histidinol-phosphate aminotransferase 1	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
AZY77842.1|2149380_2150736_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
AZY77843.1|2150762_2151923_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
AZY77844.1|2151925_2152564_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77845.1|2152565_2153870_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY77846.1|2153910_2155206_-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)	NA	NA	NA	NA	NA
AZY77847.1|2155212_2155719_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY77848.1|2155715_2156864_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
AZY77849.1|2156891_2157317_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
AZY77850.1|2157639_2160522_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
AZY77851.1|2160614_2161370_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
AZY77852.1|2162135_2163485_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
AZY77853.1|2163583_2164534_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77854.1|2164632_2165583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77855.1|2165656_2166130_+	RidA family protein	NA	NA	NA	NA	NA
AZY77856.1|2166155_2167364_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY77857.1|2167360_2168134_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
AZY77858.1|2168133_2168757_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
AZY77859.1|2168922_2169183_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
AZY77860.1|2169486_2170068_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77861.1|2170134_2170389_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
AZY77862.1|2170375_2173000_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2200783	2261988	4121896	protease,transposase,tRNA	Lake_Baikal_phage(21.43%)	53	NA	NA
AZY77882.1|2200783_2201734_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77883.1|2201934_2202744_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY77884.1|2202868_2203819_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77885.1|2203815_2204709_-	methylglyoxal synthase	NA	NA	NA	NA	NA
AZY77886.1|2204833_2205028_-	Fe-S assembly protein IscX	NA	NA	NA	NA	NA
AZY77887.1|2205027_2205369_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
AZY77888.1|2205378_2207241_-	chaperone protein HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
AZY77889.1|2207370_2207883_-	co-chaperone protein HscB	NA	NA	NA	NA	NA
AZY77890.1|2207885_2208209_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
AZY77891.1|2208210_2208621_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
AZY77892.1|2208658_2209870_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
AZY77893.1|2209887_2210400_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
AZY77894.1|2210615_2211107_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
AZY77895.1|2211359_2213396_-	UvrABC system protein B	NA	NA	NA	NA	NA
AZY77896.1|2213473_2214676_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
AZY77897.1|2214726_2215455_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
AZY77898.1|2217012_2217963_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77899.1|2218533_2218746_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77900.1|2218763_2219495_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77901.1|2219529_2220171_-	CoA transferase subunit B	NA	NA	NA	NA	NA
AZY77902.1|2220163_2220880_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA	NA
AZY77903.1|2223044_2223821_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA	NA
AZY77904.1|2223842_2225000_-	thiolase	NA	NA	NA	NA	NA
AZY77905.1|2224996_2225428_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77906.1|2225424_2226228_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY77907.1|2226241_2226697_-	MaoC family dehydratase	NA	NA	NA	NA	NA
AZY77908.1|2226709_2227681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY77909.1|2227746_2228970_-	CoA transferase	NA	NA	NA	NA	NA
AZY77910.1|2229197_2230148_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77911.1|2230271_2232725_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
AZY77912.1|2232913_2234218_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
AZY77913.1|2234322_2234976_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
AZY77914.1|2234978_2236289_-	trigger factor	NA	NA	NA	NA	NA
AZY77915.1|2236467_2237046_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
AZY77916.1|2237157_2237358_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
AZY77917.1|2237703_2238270_-	DUF924 domain-containing protein	NA	NA	NA	NA	NA
AZY77918.1|2238353_2238557_-	cold-shock protein CspA	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
AZY77919.1|2238863_2239184_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77920.1|2239225_2239507_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77921.1|2239581_2240838_-	autotransporter Phg	NA	NA	NA	NA	NA
AZY77922.1|2241220_2241550_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY77923.1|2243120_2243942_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
AZY77924.1|2243941_2245081_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
AZY77925.1|2245087_2245984_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
AZY77926.1|2245980_2247906_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
AZY77927.1|2248265_2250878_+	TonB-dependent receptor	NA	NA	NA	NA	NA
AZY77928.1|2250930_2253231_-	DNA helicase II	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
AZY77929.1|2253227_2254436_-	acyl-CoA desaturase	NA	NA	NA	NA	NA
AZY77930.1|2254697_2255072_+	hypothetical protein	NA	NA	NA	NA	NA
AZY77931.1|2255068_2256019_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77932.1|2256117_2258112_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
AZY77933.1|2258171_2259137_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
AZY77934.1|2259126_2261988_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
>prophage 20
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2265381	2328900	4121896	transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	52	NA	NA
AZY77939.1|2265381_2266332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77940.1|2266318_2266498_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77941.1|2266442_2266883_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY77942.1|2267011_2268241_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY77943.1|2268279_2269101_-	DUF455 domain-containing protein	NA	NA	NA	NA	NA
AZY77944.1|2269154_2270306_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY77945.1|2270397_2270886_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
AZY77946.1|2278902_2279103_+	CsbD family protein	NA	NA	NA	NA	NA
AZY77947.1|2279134_2279296_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY77948.1|2279353_2279692_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY77949.1|2279840_2280791_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77950.1|2280889_2281840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77951.1|2281826_2282006_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77952.1|2281950_2282391_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
AZY77953.1|2282519_2283749_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
AZY77954.1|2284661_2285813_+	N-acetyltransferase	NA	NA	NA	NA	NA
AZY77955.1|2291560_2294134_+	cyanophycin synthetase	NA	NA	NA	NA	NA
AZY77956.1|2294399_2294600_+	CsbD family protein	NA	NA	NA	NA	NA
AZY77957.1|2294631_2294793_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
AZY77958.1|2294850_2295189_+	phospholipid-binding protein	NA	NA	NA	NA	NA
AZY77959.1|2295337_2296288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77960.1|2296386_2297337_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77961.1|2297435_2298155_-	ABC transporter	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
AZY79593.1|2298231_2298780_+	arylesterase	NA	NA	NA	NA	NA
AZY77962.1|2298761_2300777_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
AZY77963.1|2300959_2301709_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
AZY77964.1|2301721_2302585_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
AZY77965.1|2302588_2304004_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
AZY77966.1|2304137_2304866_-	glutaredoxin	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
AZY77967.1|2305004_2305205_-	copper chaperone	NA	NA	NA	NA	NA
AZY77968.1|2305380_2305779_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
AZY77969.1|2305802_2307203_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
AZY79594.1|2307321_2308074_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77970.1|2308362_2309040_-	hypothetical protein	NA	NA	NA	NA	NA
AZY77971.1|2309066_2309846_-	3'-5' exonuclease	NA	NA	NA	NA	NA
AZY77972.1|2309842_2310727_-	peptidase	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
AZY79595.1|2310744_2311434_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
AZY77973.1|2311508_2312267_-	5'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
AZY77974.1|2312392_2313040_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
AZY79596.1|2313307_2314324_+|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY77975.1|2314421_2315462_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
AZY77976.1|2315596_2316889_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
AZY77977.1|2318248_2318632_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
AZY77978.1|2318649_2319237_-	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
AZY77979.1|2319274_2320225_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY77980.1|2320323_2320884_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
AZY77981.1|2320880_2321426_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77982.1|2321621_2322650_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AZY77983.1|2322690_2324031_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
AZY77984.1|2324139_2325144_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY77985.1|2325250_2327851_+	DUF3394 domain-containing protein	NA	NA	NA	NA	NA
AZY77986.1|2327949_2328900_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2701479	2742147	4121896	transposase,tRNA	Salmonella_phage(33.33%)	44	NA	NA
AZY78300.1|2701479_2702430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78301.1|2702540_2702723_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78302.1|2702822_2703419_-	lipoprotein	NA	NA	NA	NA	NA
AZY78303.1|2703602_2704694_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78304.1|2705193_2705604_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78305.1|2705662_2706004_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
AZY78306.1|2706009_2708427_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
AZY78307.1|2708439_2709462_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
AZY78308.1|2709536_2709896_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
AZY78309.1|2709911_2710109_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
AZY78310.1|2710444_2711395_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78311.1|2711381_2711570_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78312.1|2711589_2712039_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
AZY78313.1|2712035_2712986_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78314.1|2713096_2714545_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY78315.1|2714659_2714941_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78316.1|2715044_2715995_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78317.1|2716239_2716953_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY78318.1|2717075_2717303_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY78319.1|2717597_2718236_-	DedA family protein	NA	NA	NA	NA	NA
AZY78320.1|2718308_2719379_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
AZY78321.1|2719375_2720326_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78322.1|2720741_2721266_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
AZY78323.1|2721269_2721539_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78324.1|2721737_2722799_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
AZY78325.1|2722882_2724517_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
AZY78326.1|2724518_2725322_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY78327.1|2725350_2726310_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY78328.1|2726313_2727828_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78329.1|2727864_2728869_-	peptidase M20	NA	NA	NA	NA	NA
AZY78330.1|2728876_2729125_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78331.1|2729299_2729770_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
AZY78332.1|2729805_2730417_-	LysE family translocator	NA	NA	NA	NA	NA
AZY78333.1|2730447_2731071_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
AZY78334.1|2731151_2732684_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
AZY78335.1|2732718_2733960_-	MFS transporter	NA	NA	NA	NA	NA
AZY78336.1|2734003_2735035_-	alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
AZY78337.1|2735031_2736201_-	amine oxidase	NA	NA	NA	NA	NA
AZY78338.1|2736194_2736875_-	anti-sigma factor	NA	NA	NA	NA	NA
AZY78339.1|2737036_2737879_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78340.1|2738041_2739013_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY78341.1|2739184_2740063_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AZY78342.1|2740085_2741156_-	FUSC family protein	NA	NA	NA	NA	NA
AZY78343.1|2741196_2742147_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2797612	2870482	4121896	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
AZY78387.1|2797612_2798029_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
AZY78388.1|2798139_2798772_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
AZY78389.1|2798800_2799244_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
AZY78390.1|2799265_2800357_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78391.1|2800411_2801212_-	aldolase	NA	NA	NA	NA	NA
AZY78392.1|2801347_2801968_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
AZY78393.1|2802107_2802581_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78394.1|2803720_2804671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78395.1|2804667_2812329_-	adhesin	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
AZY78396.1|2812569_2816616_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
AZY78397.1|2816928_2817510_+	TRAP transporter small permease	NA	NA	NA	NA	NA
AZY78398.1|2817506_2818805_+	TRAP transporter large permease	NA	NA	NA	NA	NA
AZY78399.1|2818884_2819913_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA	NA
AZY78400.1|2819836_2820187_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78401.1|2820173_2821124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78402.1|2821120_2822071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78403.1|2822387_2822993_+	fimbrial protein FimX	NA	NA	NA	NA	NA
AZY78404.1|2823046_2824360_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
AZY78405.1|2824434_2824905_-	phenylacetic acid degradation protein PaaD	NA	NA	NA	NA	NA
AZY78406.1|2824904_2825693_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
AZY78407.1|2825703_2827356_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
AZY78408.1|2827443_2828394_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79617.1|2829555_2830062_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
AZY78409.1|2830058_2830823_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA	NA
AZY78410.1|2830838_2831123_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
AZY78411.1|2831187_2832177_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
AZY78412.1|2832348_2833278_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
AZY78413.1|2833249_2833936_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
AZY78414.1|2833969_2834515_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
AZY78415.1|2834559_2835825_+	peptidase M48	NA	NA	NA	NA	NA
AZY78416.1|2835821_2836724_+	ribosome biogenesis GTPase	NA	NA	NA	NA	NA
AZY78417.1|2837905_2838850_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY78418.1|2838944_2840462_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78419.1|2840503_2842132_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
AZY78420.1|2842239_2843121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78421.1|2846233_2846608_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
AZY78422.1|2846632_2846971_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
AZY78423.1|2847014_2848649_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
AZY78424.1|2848687_2850034_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA	NA
AZY79618.1|2850141_2851563_+	argininosuccinate lyase	NA	NA	NA	NA	NA
AZY78425.1|2851632_2852217_-	nitroreductase	NA	NA	NA	NA	NA
AZY78426.1|2852319_2853270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78427.1|2853404_2854511_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78428.1|2854521_2855619_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
AZY78429.1|2855763_2856969_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA	NA
AZY78430.1|2856975_2857497_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
AZY78431.1|2857493_2857985_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
AZY78432.1|2857981_2858233_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
AZY78433.1|2858213_2858699_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
AZY78434.1|2858834_2862296_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78435.1|2862292_2863198_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
AZY78436.1|2863207_2863639_-	lipoprotein	NA	NA	NA	NA	NA
AZY79619.1|2863885_2864389_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
AZY78437.1|2864400_2865867_+	MFS transporter	NA	NA	NA	NA	NA
AZY78438.1|2865941_2866817_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79620.1|2866813_2867821_-	biotin synthase	NA	NA	NA	NA	NA
AZY78439.1|2868288_2868594_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY78440.1|2868684_2869275_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79621.1|2869465_2870482_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 23
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2873625	2940436	4121896	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
AZY78443.1|2873625_2874576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78444.1|2874674_2875625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78445.1|2875621_2876416_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
AZY78446.1|2876447_2877152_-	oxidoreductase	NA	NA	NA	NA	NA
AZY78447.1|2877226_2878027_-	SURF1 family protein	NA	NA	NA	NA	NA
AZY78448.1|2878023_2878431_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
AZY78449.1|2878427_2879069_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
AZY78450.1|2879061_2881083_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
AZY78451.1|2882322_2883654_+	MFS transporter	NA	NA	NA	NA	NA
AZY78452.1|2883650_2884601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78453.1|2886307_2886613_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78454.1|2887281_2887620_+	transcriptional regulator	NA	NA	NA	NA	NA
AZY78455.1|2892173_2892776_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78456.1|2892872_2894162_+	MFS transporter	NA	NA	NA	NA	NA
AZY78457.1|2894219_2894951_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
AZY78458.1|2894947_2895751_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
AZY78459.1|2895747_2896836_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AZY78460.1|2896832_2897762_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY78461.1|2897910_2899056_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78462.1|2899077_2900028_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78463.1|2900358_2904180_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
AZY78464.1|2904336_2905005_-	lipoprotein	NA	NA	NA	NA	NA
AZY78465.1|2905009_2906683_-	MCE family protein	NA	NA	NA	NA	NA
AZY78466.1|2906701_2908021_-	paraquat-inducible membrane protein A	NA	NA	NA	NA	NA
AZY78467.1|2908025_2910377_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
AZY79622.1|2910396_2912565_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
AZY78468.1|2912561_2917751_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
AZY78469.1|2917840_2918155_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
AZY78470.1|2918382_2918628_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
AZY78471.1|2918722_2919241_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
AZY78472.1|2919340_2920546_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
AZY78473.1|2920661_2922059_-	chloride channel protein EriC	NA	NA	NA	NA	NA
AZY78474.1|2922175_2922754_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
AZY78475.1|2922826_2924218_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
AZY78476.1|2924385_2925336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78477.1|2925616_2926237_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
AZY78478.1|2926233_2926647_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
AZY78479.1|2926643_2927687_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
AZY78480.1|2927742_2927931_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78481.1|2927940_2928705_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
AZY78482.1|2928795_2929452_+	adenylate kinase	NA	NA	NA	NA	NA
AZY78483.1|2929543_2930302_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY78484.1|2930327_2931929_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
AZY78485.1|2932129_2933134_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
AZY78486.1|2933234_2933498_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
AZY78487.1|2933615_2934392_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
AZY78488.1|2934982_2935933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78489.1|2938316_2939429_-	malate dehydrogenase	NA	NA	NA	NA	NA
AZY78490.1|2939485_2940436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	2970822	3010011	4121896	transposase	Planktothrix_phage(50.0%)	38	NA	NA
AZY78519.1|2970822_2971773_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78520.1|2971759_2972005_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78521.1|2971893_2972790_-	inositol monophosphatase	NA	NA	NA	NA	NA
AZY78522.1|2975067_2977293_+	glycosyl hydrolase	NA	NA	NA	NA	NA
AZY78523.1|2977457_2978546_+	methionine import ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
AZY78524.1|2978502_2979156_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY78525.1|2979203_2980001_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78526.1|2980532_2981483_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78527.1|2981563_2982712_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
AZY78528.1|2982768_2983719_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78529.1|2983705_2983924_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78530.1|2983817_2984123_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
AZY78531.1|2984151_2984586_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
AZY78532.1|2984587_2985832_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
AZY78533.1|2985828_2986539_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79624.1|2986553_2987465_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY78534.1|2987827_2988232_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78535.1|2988228_2988687_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78536.1|2988693_2989602_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79625.1|2989598_2990465_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
AZY78537.1|2990451_2991279_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
AZY78538.1|2991289_2992417_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
AZY78539.1|2993494_2994733_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78540.1|2994774_2996037_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78541.1|2996043_2996796_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY78542.1|2996847_2997033_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79626.1|2997308_2997773_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
AZY78543.1|2997804_2998464_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
AZY78544.1|2998608_3000717_+	AsmA family protein	NA	NA	NA	NA	NA
AZY78545.1|3000713_3001664_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78546.1|3001767_3002388_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79627.1|3002491_3003232_+	oxidoreductase	NA	NA	NA	NA	NA
AZY78547.1|3004366_3005491_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78548.1|3005536_3005905_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78549.1|3006146_3007097_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78550.1|3008132_3008675_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78551.1|3008879_3009074_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78552.1|3009060_3010011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	3137096	3200931	4121896	protease,transposase,tRNA	Pseudomonas_phage(30.0%)	58	NA	NA
AZY78654.1|3137096_3138047_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79636.1|3138192_3139317_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
AZY78655.1|3139522_3140086_+	hydrolase	NA	NA	NA	NA	NA
AZY78656.1|3141080_3141563_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
AZY78657.1|3141720_3142968_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
AZY78658.1|3143188_3143845_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AZY78659.1|3143880_3145110_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
AZY78660.1|3145377_3146328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78661.1|3146419_3147835_+	metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
AZY78662.1|3147840_3148977_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
AZY78663.1|3149046_3149418_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
AZY78664.1|3149505_3150252_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78665.1|3150288_3151353_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
AZY78666.1|3151541_3151934_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
AZY79637.1|3151943_3152372_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
AZY78667.1|3152667_3153765_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78668.1|3154106_3155471_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
AZY78669.1|3155529_3156081_+	DUF615 domain-containing protein	NA	NA	NA	NA	NA
AZY78670.1|3156094_3156769_+	carboxylesterase	NA	NA	NA	NA	NA
AZY78671.1|3158025_3158835_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
AZY78672.1|3158837_3159674_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY78673.1|3159688_3160381_+	cysteine hydrolase	NA	NA	NA	NA	NA
AZY78674.1|3160392_3160782_-	VOC family protein	NA	NA	NA	NA	NA
AZY78675.1|3160887_3162276_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
AZY78676.1|3162392_3163889_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78677.1|3164185_3164860_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78678.1|3164753_3164972_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78679.1|3164958_3165909_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78680.1|3165905_3168365_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AZY79638.1|3168461_3169907_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
AZY78681.1|3169910_3171098_-	MFS transporter	NA	NA	NA	NA	NA
AZY78682.1|3171166_3171676_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78683.1|3171877_3172330_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY79640.1|3172502_3172760_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79639.1|3172891_3175954_+	pyruvate ferredoxin oxidoreductase	NA	NA	NA	NA	NA
AZY78684.1|3176259_3179187_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
AZY78685.1|3179208_3180405_+	ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
AZY78686.1|3180722_3181250_+	histone	NA	NA	NA	NA	NA
AZY78687.1|3181388_3181964_+	YggT family protein	NA	NA	NA	NA	NA
AZY78688.1|3181971_3183435_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
AZY78689.1|3183445_3184573_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
AZY78690.1|3184580_3184706_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79641.1|3184702_3185830_-	teichoic acid biosynthesis protein	NA	NA	NA	NA	NA
AZY78691.1|3185855_3186095_-	acyl carrier protein	NA	NA	NA	NA	NA
AZY78692.1|3186375_3186879_-	lipoprotein	NA	NA	NA	NA	NA
AZY79642.1|3187051_3187993_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
AZY78693.1|3188004_3189102_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
AZY78694.1|3190067_3191414_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
AZY78695.1|3191423_3191873_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
AZY78696.1|3191962_3192397_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
AZY78697.1|3192475_3193024_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
AZY78698.1|3193106_3194477_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
AZY78699.1|3194487_3195081_+	esterase	NA	NA	NA	NA	NA
AZY78700.1|3195152_3197036_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
AZY78701.1|3197073_3197973_+	energy transducer TonB	NA	NA	NA	NA	NA
AZY78702.1|3197969_3198833_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
AZY78703.1|3198931_3199882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78704.1|3199980_3200931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	3283784	3335703	4121896	transposase,holin	Tupanvirus(16.67%)	42	NA	NA
AZY78772.1|3283784_3284120_+|holin	phage holin family protein	holin	NA	NA	NA	NA
AZY78773.1|3284119_3284962_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
AZY78774.1|3285060_3286011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78775.1|3286075_3287047_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78776.1|3287110_3288130_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
AZY79648.1|3288131_3289505_-	MFS transporter	NA	NA	NA	NA	NA
AZY78777.1|3289782_3290463_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
AZY78778.1|3290475_3292602_+	lytic transglycosylase	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
AZY78779.1|3292598_3293693_+	CCA-adding enzyme	NA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
AZY78780.1|3293707_3294967_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY78781.1|3294986_3296711_-	ATP-dependent helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
AZY78782.1|3296949_3297702_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
AZY78783.1|3297840_3298791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79649.1|3299103_3300582_+	phospholipase D family protein	NA	NA	NA	NA	NA
AZY78784.1|3300588_3301698_-	molybdenum import ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
AZY78785.1|3301709_3302390_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
AZY78786.1|3302411_3303167_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79650.1|3303302_3304187_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY78787.1|3304274_3304856_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78788.1|3304948_3305071_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78789.1|3305116_3305416_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
AZY79651.1|3305567_3305993_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78790.1|3308199_3308703_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY78791.1|3308718_3309669_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78792.1|3309655_3309853_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78793.1|3310196_3310970_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78794.1|3311102_3312113_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY78795.1|3312264_3313920_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
AZY78796.1|3313974_3314316_-	cupin domain-containing protein	NA	NA	NA	NA	NA
AZY78797.1|3314329_3315769_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY78798.1|3315901_3316717_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78799.1|3316735_3316924_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78800.1|3316910_3317861_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78801.1|3319248_3320196_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78802.1|3320422_3321163_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78803.1|3321248_3322199_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78804.1|3323640_3325212_-	winged helix family transcriptional regulator	NA	NA	NA	NA	NA
AZY78805.1|3325544_3327398_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78806.1|3327442_3330007_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
AZY78807.1|3330425_3331376_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78808.1|3334241_3334736_-	DUF4276 domain-containing protein	NA	NA	NA	NA	NA
AZY78809.1|3334752_3335703_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	3397606	3451347	4121896	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
AZY78855.1|3397606_3398557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78856.1|3398961_3399606_-	urease accessory protein UreG	NA	NA	NA	NA	NA
AZY78857.1|3399630_3400215_-	urease accessory protein UreF	NA	NA	NA	NA	NA
AZY78858.1|3400315_3400933_-	urease accessory protein UreE	NA	NA	NA	NA	NA
AZY78859.1|3400935_3402651_-	urease subunit alpha	NA	NA	NA	NA	NA
AZY78860.1|3402647_3402956_-	urease subunit beta	NA	NA	NA	NA	NA
AZY78861.1|3402972_3403608_-	urease accessory protein UreJ	NA	NA	NA	NA	NA
AZY78862.1|3403634_3403937_-	urease subunit gamma	NA	NA	NA	NA	NA
AZY78863.1|3404037_3404892_-	urease accessory protein UreD	NA	NA	NA	NA	NA
AZY78864.1|3405473_3405746_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
AZY78865.1|3406163_3406571_-	GFA family protein	NA	NA	NA	NA	NA
AZY78866.1|3406940_3407735_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78867.1|3407835_3409071_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
AZY78868.1|3409139_3410156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY78869.1|3410152_3411544_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
AZY78870.1|3411540_3412737_+	MFS transporter	NA	NA	NA	NA	NA
AZY78871.1|3412733_3414272_-	SpoVR family protein	NA	NA	NA	NA	NA
AZY78872.1|3414268_3415528_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78873.1|3417468_3418419_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78874.1|3419185_3420280_-	CoA transferase	NA	NA	NA	NA	NA
AZY78875.1|3420272_3421607_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA	NA
AZY78876.1|3421560_3422244_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78877.1|3422269_3423433_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY78878.1|3423429_3424431_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY78879.1|3424430_3425303_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
AZY78880.1|3425299_3426049_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
AZY78881.1|3426045_3426837_-	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
AZY78882.1|3426833_3427973_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78883.1|3428281_3429034_+	KR domain-containing protein	NA	NA	NA	NA	NA
AZY78884.1|3429067_3429850_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY78885.1|3429853_3430243_+	DNA-binding protein	NA	NA	NA	NA	NA
AZY78886.1|3431382_3432246_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY78887.1|3432281_3433370_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78888.1|3433366_3434317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78889.1|3434303_3434672_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78890.1|3434670_3437649_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78891.1|3438575_3439454_+	fatty acid desaturase	NA	NA	NA	NA	NA
AZY78892.1|3441402_3442353_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78893.1|3442349_3442817_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
AZY78894.1|3442859_3443630_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
AZY78895.1|3443650_3444451_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
AZY78896.1|3444461_3445871_+	lytic transglycosylase	NA	NA	NA	NA	NA
AZY78897.1|3445965_3446751_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA	NA
AZY79655.1|3446990_3448007_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY78898.1|3448114_3448507_-	OsmC family peroxiredoxin	NA	NA	NA	NA	NA
AZY78899.1|3448644_3449325_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AZY78900.1|3449329_3450328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY78901.1|3450396_3451347_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	3457502	3516802	4121896	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
AZY78905.1|3457502_3459266_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
AZY78906.1|3459377_3460256_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
AZY78907.1|3460368_3461184_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
AZY78908.1|3461187_3461439_+	cell division topological specificity factor	NA	NA	NA	NA	NA
AZY79656.1|3461523_3462540_-|transposase	IS110 family transposase IS1663	transposase	NA	NA	NA	NA
AZY78909.1|3462870_3463092_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78910.1|3465452_3466370_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY78911.1|3466867_3468076_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY78912.1|3468155_3469727_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY78913.1|3469844_3470780_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
AZY78914.1|3470968_3471913_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
AZY78915.1|3471981_3472197_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78916.1|3472480_3478198_+	excinuclease ABC subunit A	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
AZY78917.1|3478203_3479331_+	aminodeoxychorismate synthase, component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
AZY78918.1|3479386_3480013_+	aminotransferase	NA	NA	NA	NA	NA
AZY79657.1|3480284_3481301_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
AZY78919.1|3481396_3482107_-	oxidoreductase	NA	NA	NA	NA	NA
AZY79658.1|3482103_3483093_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY78920.1|3483224_3484820_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
AZY78921.1|3484822_3485560_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78922.1|3485715_3486588_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
AZY78923.1|3486856_3488077_+	MFS transporter	NA	NA	NA	NA	NA
AZY78924.1|3488073_3488733_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
AZY78925.1|3488804_3489437_+	pyridoxine/pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
AZY78926.1|3489466_3489985_+	flavin reductase	NA	NA	NA	NA	NA
AZY78927.1|3489995_3491105_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY78928.1|3491151_3492006_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
AZY78929.1|3492007_3492910_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78930.1|3494132_3495083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78931.1|3496839_3497829_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78932.1|3498004_3498793_-	indole-3-glycerol-phosphate synthase	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
AZY78933.1|3498789_3499821_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
AZY78934.1|3499839_3500403_-	type 1 glutamine amidotransferase	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
AZY78935.1|3500458_3501979_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
AZY78936.1|3502242_3502947_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
AZY78937.1|3502954_3503692_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
AZY78938.1|3503797_3504172_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
AZY78939.1|3504214_3505504_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78940.1|3505500_3506670_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA	NA
AZY78941.1|3506666_3507506_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
AZY78942.1|3507565_3508501_+	hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
AZY78943.1|3508513_3509464_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78944.1|3509562_3510525_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
AZY78945.1|3510556_3510916_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
AZY78946.1|3511040_3511943_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
AZY78947.1|3511944_3513717_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
AZY78948.1|3513751_3514528_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY78949.1|3515851_3516802_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	3531740	3589813	4121896	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
AZY78961.1|3531740_3532691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78962.1|3532819_3533953_-	peptidase	NA	NA	NA	NA	NA
AZY78963.1|3533996_3534902_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
AZY78964.1|3534904_3536605_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
AZY78965.1|3536601_3537522_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY78966.1|3537529_3538507_-	ABC transporter permease	NA	NA	NA	NA	NA
AZY78967.1|3538565_3539600_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
AZY78968.1|3541574_3541811_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78969.1|3541937_3542801_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
AZY78970.1|3542889_3543711_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY78971.1|3543790_3544528_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
AZY78972.1|3544524_3545517_-	nitronate monooxygenase	NA	NA	NA	NA	NA
AZY78973.1|3545630_3546293_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78974.1|3546337_3547486_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
AZY78975.1|3549809_3550760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78976.1|3551100_3552051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78977.1|3552149_3553100_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78978.1|3553396_3553894_+	hypothetical protein	NA	NA	NA	NA	NA
AZY78979.1|3553936_3555712_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
AZY79661.1|3555758_3556586_+	copper resistance protein B	NA	NA	NA	NA	NA
AZY78980.1|3556592_3557327_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY78981.1|3558496_3559291_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY78982.1|3559580_3560171_+	cysteine dioxygenase	NA	NA	NA	NA	NA
AZY78983.1|3560204_3561533_-	amidase	NA	NA	NA	NA	NA
AZY78984.1|3561607_3562753_-	transporter	NA	NA	NA	NA	NA
AZY78985.1|3562864_3563863_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78986.1|3563825_3564260_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
AZY78987.1|3565776_3566661_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY78988.1|3566657_3567863_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
AZY78989.1|3567859_3568720_-	endonuclease	NA	NA	NA	NA	NA
AZY78990.1|3568832_3570623_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
AZY78991.1|3570663_3571329_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
AZY78992.1|3571329_3571638_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
AZY79662.1|3571803_3573090_-	hypothetical protein	NA	NA	NA	NA	NA
AZY78993.1|3574523_3575474_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY78994.1|3577425_3578640_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AZY78995.1|3578745_3579735_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
AZY78996.1|3579731_3580340_+	hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
AZY78997.1|3580352_3580982_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
AZY78998.1|3580978_3581599_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
AZY78999.1|3581630_3582422_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
AZY79000.1|3583264_3583729_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
AZY79001.1|3583747_3584674_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
AZY79002.1|3584727_3586014_-	cytochrome c	NA	NA	NA	NA	NA
AZY79003.1|3586944_3587817_+	RNase adaptor protein RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
AZY79004.1|3587813_3588764_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
AZY79005.1|3588862_3589813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	3721936	3853802	4121896	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	116	3767629:3767646	3810159:3810176
AZY79113.1|3721936_3722887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79114.1|3722986_3723937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79115.1|3723933_3724569_-	transporter	NA	NA	NA	NA	NA
AZY79116.1|3724698_3725598_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
AZY79117.1|3725693_3726185_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
AZY79118.1|3726231_3727197_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79119.1|3728330_3729572_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
AZY79120.1|3729685_3730702_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
AZY79121.1|3730736_3731213_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79122.1|3731355_3732264_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
AZY79123.1|3732377_3733490_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
AZY79124.1|3733590_3734124_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY79125.1|3734212_3735463_+	kynureninase	NA	NA	NA	NA	NA
AZY79126.1|3735564_3736077_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
AZY79127.1|3735982_3736189_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79128.1|3736175_3737126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79129.1|3737191_3738130_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
AZY79130.1|3738152_3738779_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
AZY79131.1|3738775_3739432_-	HAD family hydrolase	NA	NA	NA	NA	NA
AZY79132.1|3739428_3740031_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79133.1|3740037_3740664_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
AZY79134.1|3740805_3741375_+	bacterioferritin	NA	NA	NA	NA	NA
AZY79135.1|3741445_3742765_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
AZY79136.1|3742871_3743063_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
AZY79137.1|3743314_3744604_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY79138.1|3744758_3745754_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79139.1|3745838_3746513_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79140.1|3746509_3747460_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79141.1|3747446_3747629_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79142.1|3747621_3748863_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
AZY79143.1|3748859_3749804_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
AZY79144.1|3749922_3750873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79145.1|3750832_3751762_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79146.1|3751815_3752151_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
AZY79147.1|3752195_3752960_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
AZY79148.1|3752983_3753724_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79149.1|3753731_3755306_-	long-chain fatty acid--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
AZY79150.1|3755319_3756297_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79151.1|3756569_3757169_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
AZY79152.1|3757202_3764105_-	autotransporter BatB	NA	NA	NA	NA	NA
AZY79153.1|3764551_3764683_-	entericidin	NA	NA	NA	NA	NA
AZY79154.1|3764714_3764876_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79155.1|3764948_3765155_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
AZY79156.1|3766159_3766819_+	haloacid dehalogenase	NA	NA	NA	NA	NA
AZY79157.1|3766846_3767992_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3767629:3767646	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY79158.1|3768132_3768468_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
AZY79159.1|3768542_3769403_-	Band 7 protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
AZY79160.1|3769666_3770368_-	glutathione S-transferase	NA	NA	NA	NA	NA
AZY79161.1|3770537_3770933_+	RidA family protein	NA	NA	NA	NA	NA
AZY79162.1|3771042_3771993_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79163.1|3772028_3772496_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
AZY79164.1|3772729_3773107_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79165.1|3773103_3773286_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79166.1|3773289_3774276_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
AZY79167.1|3774272_3774920_+	exonuclease	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
AZY79168.1|3774977_3775505_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79169.1|3775538_3776726_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
AZY79170.1|3776715_3777078_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
AZY79171.1|3777070_3777190_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79172.1|3777190_3777391_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
AZY79173.1|3777387_3778377_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
AZY79174.1|3779863_3781834_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
AZY79175.1|3782075_3782474_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79176.1|3782482_3783406_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79177.1|3783863_3784814_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79178.1|3785044_3786736_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
AZY79179.1|3786784_3787057_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
AZY79180.1|3787053_3787425_-	ribonuclease P protein component	NA	NA	NA	NA	NA
AZY79181.1|3787520_3787655_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
AZY79182.1|3788060_3789470_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
AZY79183.1|3789466_3790582_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
AZY79184.1|3790676_3793130_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
AZY79185.1|3793248_3794040_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79186.1|3794159_3795587_+	amidase	NA	NA	NA	NA	NA
AZY79673.1|3795625_3796597_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79187.1|3797015_3798179_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
AZY79188.1|3798266_3799112_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY79189.1|3800668_3801619_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79190.1|3802173_3802548_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
AZY79191.1|3802622_3803681_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
AZY79192.1|3803704_3804655_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79193.1|3807536_3808706_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
AZY79674.1|3808806_3810414_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3810159:3810176	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
AZY79194.1|3810460_3812482_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
AZY79195.1|3812510_3812756_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
AZY79196.1|3812769_3813960_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
AZY79197.1|3814155_3815121_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
AZY79198.1|3815143_3816283_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
AZY79199.1|3816494_3817457_+	immunogenic protein	NA	NA	NA	NA	NA
AZY79200.1|3817580_3819605_+	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA	NA
AZY79201.1|3819801_3822045_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
AZY79202.1|3822323_3822782_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79203.1|3823709_3826331_-	hypothetical protein	NA	NA	NA	NA	NA
AZY79204.1|3826394_3829022_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
AZY79205.1|3829173_3830238_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79206.1|3830234_3831008_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
AZY79207.1|3831016_3831850_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY79208.1|3831862_3832642_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
AZY79675.1|3832676_3834149_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
AZY79209.1|3834176_3834935_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
AZY79210.1|3834990_3836841_-	acetolactate synthase, large subunit, biosynthetic type	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
AZY79211.1|3836934_3837411_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AZY79212.1|3837427_3838348_-	bestrophin	NA	NA	NA	NA	NA
AZY79213.1|3838454_3838955_+	SET domain-containing protein	NA	NA	NA	NA	NA
AZY79214.1|3839328_3840021_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
AZY79215.1|3840329_3841280_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79216.1|3841276_3845050_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
AZY79217.1|3845386_3847276_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
AZY79218.1|3847287_3848181_+	cobalamin-binding protein	NA	NA	NA	NA	NA
AZY79219.1|3848206_3849082_+	thiazole synthase	NA	NA	NA	NA	NA
AZY79220.1|3849078_3849930_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
AZY79221.1|3849991_3850672_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
AZY79222.1|3850675_3851035_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79223.1|3851035_3851995_+	hypothetical protein	NA	NA	NA	NA	NA
AZY79224.1|3852015_3852504_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
AZY79676.1|3852785_3853802_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 32
CP025529	Bordetella pertussis strain H624 chromosome, complete genome	4121896	4019915	4051584	4121896	transposase	Moraxella_phage(50.0%)	32	NA	NA
AZY79389.1|4019915_4020401_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79390.1|4020619_4021600_+	protein BugT	NA	NA	NA	NA	NA
AZY79391.1|4021866_4022676_+	Pertussis toxin subunit 1	NA	NA	NA	NA	NA
AZY79392.1|4022715_4023396_+	Pertussis toxin subunit 2	NA	NA	NA	NA	NA
AZY79393.1|4023389_4023848_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
AZY79394.1|4023859_4024222_+	Pertussis toxin subunit 5	NA	NA	NA	NA	NA
AZY79395.1|4024304_4024988_+	Pertussis toxin subunit 3	NA	NA	NA	NA	NA
AZY79396.1|4025043_4025352_+	type IV secretion protein A	NA	NA	NA	NA	NA
AZY79397.1|4025370_4025685_+	type IV secretion protein B	NA	NA	NA	NA	NA
AZY79398.1|4025681_4028156_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
AZY79399.1|4028163_4029555_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
AZY79400.1|4029551_4029737_+	type IV secretion protein I	NA	NA	NA	NA	NA
AZY79401.1|4029715_4030417_+	type IV secretion protein E	NA	NA	NA	NA	NA
AZY79402.1|4030413_4031235_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
AZY79685.1|4031215_4032340_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
AZY79403.1|4032332_4033352_+	type IV secretion protein H	NA	NA	NA	NA	NA
AZY79404.1|4033557_4034592_-	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AZY79686.1|4034692_4035484_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AZY79405.1|4035566_4035941_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
AZY79406.1|4035918_4037328_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
AZY79407.1|4037320_4038703_+	DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
AZY79408.1|4039037_4040642_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
AZY79409.1|4040677_4041691_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY79410.1|4041701_4042628_+	ABC transporter permease	NA	NA	NA	NA	NA
AZY79411.1|4043018_4043969_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79412.1|4044138_4045365_+	bifunctional glutamate N-acetyltransferase/amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
AZY79413.1|4045564_4046431_+	DUF815 domain-containing protein	NA	NA	NA	NA	NA
AZY79414.1|4046423_4047386_+	NUDIX domain-containing protein	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
AZY79415.1|4047486_4048437_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79416.1|4048535_4049486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79417.1|4049584_4050535_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
AZY79418.1|4050633_4051584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
